Wall clock time and date at job start Tue Mar 31 2020 12:24:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47471 * 2 1 4 4 C 1.35923 * 117.00014 * 180.02562 * 3 2 1 5 5 C 1.38393 * 119.99298 * 359.97319 * 4 3 2 6 6 C 1.39548 * 119.81642 * 180.02562 * 5 4 3 7 7 C 1.47934 * 120.11086 * 180.02562 * 6 5 4 8 8 C 1.39947 * 119.89351 * 309.73118 * 7 6 5 9 9 C 1.36231 * 120.13818 * 179.71376 * 8 7 6 10 10 C 1.40975 * 119.92643 * 0.55610 * 9 8 7 11 11 C 1.41024 * 120.09968 * 179.73966 * 10 9 8 12 12 H 1.08000 * 120.00527 * 24.67584 * 11 10 9 13 13 C 1.39992 * 119.99826 * 204.68357 * 11 10 9 14 14 N 1.30813 * 120.00098 * 17.97080 * 13 11 10 15 15 Si 1.86805 * 120.00219 * 197.97785 * 13 11 10 16 16 H 1.48507 * 109.46704 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47381 * 119.99630 * 15 13 11 18 18 H 1.48497 * 109.47180 * 239.99960 * 15 13 11 19 19 C 1.40862 * 119.79772 * 359.71910 * 10 9 8 20 20 C 1.36479 * 119.85610 * 359.97438 * 19 10 9 21 21 F 1.35094 * 119.96654 * 179.97438 * 20 19 10 22 22 C 1.39677 * 119.77969 * 359.73285 * 6 5 4 23 23 C 1.37926 * 119.97395 * 0.56859 * 22 6 5 24 24 C 1.38428 * 120.18877 * 359.42464 * 23 22 6 25 25 Cl 1.73594 * 119.89169 * 180.29898 * 24 23 22 26 26 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46429 * 300.00086 * 1 2 3 28 28 H 1.09002 * 109.46898 * 59.99884 * 1 2 3 29 29 H 1.09003 * 109.47144 * 240.00096 * 2 1 3 30 30 H 1.09006 * 109.47314 * 120.00367 * 2 1 3 31 31 H 1.08007 * 120.08606 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.93225 * 359.97438 * 8 7 6 33 33 H 1.08001 * 120.03819 * 180.24793 * 9 8 7 34 34 H 0.97004 * 119.99740 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.07566 * 180.02562 * 19 10 9 36 36 H 1.07995 * 120.01061 * 180.29366 * 22 6 5 37 37 H 1.07994 * 119.90642 * 179.70753 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3540 1.5253 -0.0005 5 6 4.1968 0.4276 -0.0005 6 6 5.5797 0.6146 -0.0005 7 6 6.4866 -0.5541 -0.0010 8 6 6.3016 -1.5809 0.9316 9 6 7.1303 -2.6622 0.9319 10 6 8.1836 -2.7413 -0.0018 11 6 9.0470 -3.8564 -0.0013 12 1 8.7089 -4.8009 0.3986 13 6 10.3423 -3.7388 -0.5190 14 7 10.8794 -2.5564 -0.6754 15 14 11.3039 -5.2706 -0.9867 16 1 10.4789 -6.4751 -0.7145 17 1 11.6445 -5.2195 -2.4310 18 1 12.5525 -5.3351 -0.1855 19 6 8.3707 -1.7034 -0.9356 20 6 7.5316 -0.6270 -0.9322 21 9 7.7093 0.3700 -1.8264 22 6 6.1047 1.9090 -0.0062 23 6 5.2565 2.9966 0.0000 24 6 3.8849 2.8098 0.0000 25 17 2.8246 4.1843 0.0000 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7853 -0.5710 0.0004 32 1 5.4976 -1.5180 1.6500 33 1 6.9836 -3.4556 1.6498 34 1 11.7772 -2.4750 -1.0338 35 1 9.1759 -1.7595 -1.6531 36 1 7.1743 2.0580 -0.0111 37 1 5.6637 3.9969 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243572541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:59 Heat of formation + Delta-G solvation = -63.099962 kcal Electronic energy + Delta-G solvation = -23379.036925 eV Core-core repulsion = 19639.933515 eV Total energy + Delta-G solvation = -3739.103410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.78217 -39.96359 -37.95215 -37.05628 -36.07348 -34.05084 -32.04626 -31.31200 -29.66081 -29.23393 -28.61779 -25.58235 -23.96311 -22.31516 -21.81305 -20.91264 -20.40546 -17.98007 -17.77086 -16.20819 -16.09585 -15.99700 -15.74621 -15.00425 -14.88809 -14.72936 -14.41955 -13.84111 -13.57563 -13.40602 -13.22794 -12.83374 -12.67222 -12.38570 -12.30911 -12.10626 -11.81000 -11.66963 -11.45746 -11.32894 -11.14151 -11.00397 -10.71542 -10.67355 -10.52331 -10.48480 -10.10470 -9.82652 -9.46254 -8.59052 -8.03510 -7.67042 -7.38612 -7.08082 -4.68759 1.34212 1.65252 2.44605 2.46117 2.74716 2.91292 2.95278 2.97757 3.22038 3.69324 3.94703 4.31176 4.86963 4.87561 5.03755 5.18598 5.22970 5.33020 5.41236 5.50939 5.55740 5.64601 5.69785 5.78038 5.91398 5.98938 6.11556 6.36165 6.49648 6.51070 6.71044 6.75928 6.87071 6.92840 7.04117 7.34905 7.41630 7.52701 7.60901 7.71094 7.96005 8.28031 8.51734 8.58523 9.82025 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003105 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.820205 B = 9015.129890 C = 9970.786560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.309 6.309 4 C 0.140 3.860 5 C -0.204 4.204 6 C 0.060 3.940 7 C -0.249 4.249 8 C -0.039 4.039 9 C -0.235 4.235 10 C 0.136 3.864 11 C -0.440 4.440 12 H 0.088 0.912 13 C 0.072 3.928 14 N -0.770 5.770 15 Si 0.914 3.086 16 H -0.257 1.257 17 H -0.268 1.268 18 H -0.271 1.271 19 C -0.210 4.210 20 C 0.138 3.862 21 F -0.160 7.160 22 C -0.144 4.144 23 C -0.070 4.070 24 C -0.092 4.092 25 Cl -0.078 7.078 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.133 0.867 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.288 0.712 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.589 3.953 0.833 11.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.223 6.223 4 C 0.094 3.906 5 C -0.223 4.223 6 C 0.060 3.940 7 C -0.251 4.251 8 C -0.057 4.057 9 C -0.254 4.254 10 C 0.132 3.868 11 C -0.467 4.467 12 H 0.106 0.894 13 C -0.149 4.149 14 N -0.393 5.393 15 Si 0.738 3.262 16 H -0.180 1.180 17 H -0.193 1.193 18 H -0.196 1.196 19 C -0.230 4.230 20 C 0.119 3.881 21 F -0.139 7.139 22 C -0.163 4.163 23 C -0.089 4.089 24 C -0.119 4.119 25 Cl -0.050 7.050 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.151 0.849 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.099 0.901 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -10.608 4.365 0.732 11.495 hybrid contribution 0.656 -0.519 -0.341 0.903 sum -9.952 3.846 0.391 10.677 Atomic orbital electron populations 1.21753 0.92882 1.02666 1.03342 1.22793 0.95636 0.82077 1.01783 1.86095 1.18461 1.29105 1.88666 1.18483 0.82721 0.92248 0.97156 1.21312 0.93345 0.97394 1.10288 1.18687 0.91577 0.92861 0.90891 1.17899 1.02247 0.98716 1.06236 1.20149 0.97285 0.92538 0.95764 1.20711 1.01907 0.99807 1.02969 1.17456 0.90260 0.91311 0.87752 1.19766 0.96235 0.97647 1.33056 0.89401 1.26104 0.98355 0.97745 0.92707 1.69813 1.15083 1.24851 1.29533 0.86147 0.79350 0.81504 0.79244 1.18015 1.19323 1.19604 1.20948 1.02307 0.95842 1.03913 1.17323 0.95804 0.86304 0.88679 1.91354 1.95105 1.60550 1.66921 1.21236 0.99991 0.91150 1.03886 1.20736 0.89961 0.99753 0.98449 1.20030 0.90791 0.85468 1.15645 1.98313 1.66384 1.42807 1.97455 0.90462 0.91644 0.91641 0.91840 0.91884 0.84876 0.88314 0.88030 0.90114 0.85203 0.85226 0.84951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.93 16 2 C 0.05 0.60 5.46 37.16 0.20 0.80 16 3 O -0.31 -4.57 9.58 -19.50 -0.19 -4.76 16 4 C 0.14 2.28 6.68 -39.24 -0.26 2.02 16 5 C -0.20 -3.48 8.49 -39.04 -0.33 -3.81 16 6 C 0.06 1.15 5.31 -104.90 -0.56 0.59 16 7 C -0.25 -5.33 5.50 -104.57 -0.58 -5.90 16 8 C -0.04 -0.80 9.44 -39.66 -0.37 -1.18 16 9 C -0.23 -5.19 9.73 -39.27 -0.38 -5.57 16 10 C 0.14 3.31 5.57 -106.81 -0.60 2.71 16 11 C -0.44 -10.53 9.03 -37.87 -0.34 -10.87 16 12 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 13 C 0.07 1.65 5.13 -17.33 -0.09 1.56 16 14 N -0.77 -18.36 10.96 55.55 0.61 -17.75 16 15 Si 0.91 16.90 29.60 -169.99 -5.03 11.87 16 16 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 17 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 18 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 19 C -0.21 -5.20 8.60 -39.22 -0.34 -5.54 16 20 C 0.14 3.22 7.10 -39.50 -0.28 2.94 16 21 F -0.16 -3.65 15.83 2.25 0.04 -3.61 16 22 C -0.14 -2.56 8.85 -39.16 -0.35 -2.90 16 23 C -0.07 -1.10 9.81 -39.63 -0.39 -1.49 16 24 C -0.09 -1.48 6.34 -39.23 -0.25 -1.73 16 25 Cl -0.08 -1.13 28.49 -51.86 -1.48 -2.61 16 26 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 30 H 0.06 0.68 7.66 -51.93 -0.40 0.29 16 31 H 0.13 2.08 6.27 -52.48 -0.33 1.75 16 32 H 0.10 1.77 8.04 -52.48 -0.42 1.35 16 33 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 34 H 0.29 6.17 8.30 -40.82 -0.34 5.83 16 35 H 0.13 3.34 6.16 -52.49 -0.32 3.02 16 36 H 0.13 2.30 7.74 -52.49 -0.41 1.90 16 37 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -25.60 337.36 -9.43 -35.03 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.94 Total: 6.04 kcal Atomic # 6 Polarization: -24.77 SS G_CDS: -4.52 Total: -29.29 kcal Atomic # 7 Polarization: -18.36 SS G_CDS: 0.61 Total: -17.75 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.76 kcal Atomic # 9 Polarization: -3.65 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 16.90 SS G_CDS: -5.03 Total: 11.87 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.48 Total: -2.61 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -25.60 -9.43 -35.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243572541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.066 kcal (2) G-P(sol) polarization free energy of solvation -25.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds