Wall clock time and date at job start Tue Mar 31 2020 12:24:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.47471 * 2 1 4 4 C 1.35923 * 117.00014 * 180.02562 * 3 2 1 5 5 C 1.38393 * 119.99298 * 359.97319 * 4 3 2 6 6 C 1.39548 * 119.81642 * 180.02562 * 5 4 3 7 7 C 1.47934 * 120.11086 * 180.02562 * 6 5 4 8 8 C 1.39947 * 119.89351 * 309.73118 * 7 6 5 9 9 C 1.36231 * 120.13818 * 179.71376 * 8 7 6 10 10 C 1.40975 * 119.92643 * 0.55610 * 9 8 7 11 11 C 1.41024 * 120.09968 * 179.73966 * 10 9 8 12 12 H 1.08000 * 120.00527 * 24.67584 * 11 10 9 13 13 C 1.39992 * 119.99826 * 204.68357 * 11 10 9 14 14 N 1.30813 * 120.00098 * 17.97080 * 13 11 10 15 15 Si 1.86805 * 120.00219 * 197.97785 * 13 11 10 16 16 H 1.48507 * 109.46704 * 359.97438 * 15 13 11 17 17 H 1.48490 * 109.47381 * 119.99630 * 15 13 11 18 18 H 1.48497 * 109.47180 * 239.99960 * 15 13 11 19 19 C 1.40862 * 119.79772 * 359.71910 * 10 9 8 20 20 C 1.36479 * 119.85610 * 359.97438 * 19 10 9 21 21 F 1.35094 * 119.96654 * 179.97438 * 20 19 10 22 22 C 1.39677 * 119.77969 * 359.73285 * 6 5 4 23 23 C 1.37926 * 119.97395 * 0.56859 * 22 6 5 24 24 C 1.38428 * 120.18877 * 359.42464 * 23 22 6 25 25 Cl 1.73594 * 119.89169 * 180.29898 * 24 23 22 26 26 H 1.08998 * 109.47171 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46429 * 300.00086 * 1 2 3 28 28 H 1.09002 * 109.46898 * 59.99884 * 1 2 3 29 29 H 1.09003 * 109.47144 * 240.00096 * 2 1 3 30 30 H 1.09006 * 109.47314 * 120.00367 * 2 1 3 31 31 H 1.08007 * 120.08606 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.93225 * 359.97438 * 8 7 6 33 33 H 1.08001 * 120.03819 * 180.24793 * 9 8 7 34 34 H 0.97004 * 119.99740 * 179.97438 * 14 13 11 35 35 H 1.07997 * 120.07566 * 180.02562 * 19 10 9 36 36 H 1.07995 * 120.01061 * 180.29366 * 22 6 5 37 37 H 1.07994 * 119.90642 * 179.70753 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3540 1.5253 -0.0005 5 6 4.1968 0.4276 -0.0005 6 6 5.5797 0.6146 -0.0005 7 6 6.4866 -0.5541 -0.0010 8 6 6.3016 -1.5809 0.9316 9 6 7.1303 -2.6622 0.9319 10 6 8.1836 -2.7413 -0.0018 11 6 9.0470 -3.8564 -0.0013 12 1 8.7089 -4.8009 0.3986 13 6 10.3423 -3.7388 -0.5190 14 7 10.8794 -2.5564 -0.6754 15 14 11.3039 -5.2706 -0.9867 16 1 10.4789 -6.4751 -0.7145 17 1 11.6445 -5.2195 -2.4310 18 1 12.5525 -5.3351 -0.1855 19 6 8.3707 -1.7034 -0.9356 20 6 7.5316 -0.6270 -0.9322 21 9 7.7093 0.3700 -1.8264 22 6 6.1047 1.9090 -0.0062 23 6 5.2565 2.9966 0.0000 24 6 3.8849 2.8098 0.0000 25 17 2.8246 4.1843 0.0000 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7853 -0.5710 0.0004 32 1 5.4976 -1.5180 1.6500 33 1 6.9836 -3.4556 1.6498 34 1 11.7772 -2.4750 -1.0338 35 1 9.1759 -1.7595 -1.6531 36 1 7.1743 2.0580 -0.0111 37 1 5.6637 3.9969 0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243572541.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:58 Heat of formation + Delta-G solvation = -72.389031 kcal Electronic energy + Delta-G solvation = -23379.439729 eV Core-core repulsion = 19639.933515 eV Total energy + Delta-G solvation = -3739.506214 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.60154 -41.20189 -39.50523 -38.41853 -37.33333 -35.72247 -33.23821 -32.56178 -31.16981 -30.84133 -30.09192 -27.20849 -25.05927 -23.80645 -23.26342 -22.31332 -21.96636 -19.59186 -19.17765 -17.77572 -17.43250 -17.12240 -17.10377 -16.62008 -16.49189 -16.36348 -16.16427 -15.14730 -14.79315 -14.66359 -14.56416 -14.47329 -14.03112 -13.68359 -13.44312 -13.38632 -13.28474 -12.95911 -12.93046 -12.74970 -12.41743 -12.36422 -12.19432 -11.98753 -11.86159 -11.73891 -11.62326 -11.49928 -11.12391 -9.99227 -9.49374 -9.39135 -8.96773 -8.77128 -6.48317 -0.05893 0.34610 0.81350 0.95798 1.20182 1.38959 1.47537 1.55170 2.14948 2.15216 2.48131 2.71474 3.51592 3.74361 3.76552 3.78993 4.06405 4.13380 4.19236 4.26395 4.36636 4.38791 4.45872 4.72768 4.79247 4.87733 4.91530 4.96056 4.99252 5.06903 5.17215 5.19405 5.25081 5.50808 5.58811 5.61827 5.75225 5.88677 5.94928 6.19238 6.30019 6.50325 6.74887 6.81251 8.15804 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003105 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.820205 B = 9015.129890 C = 9970.786560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.041 3.959 3 O -0.315 6.315 4 C 0.140 3.860 5 C -0.200 4.200 6 C 0.034 3.966 7 C -0.239 4.239 8 C -0.036 4.036 9 C -0.240 4.240 10 C 0.110 3.890 11 C -0.472 4.472 12 H 0.094 0.906 13 C 0.033 3.967 14 N -0.808 5.808 15 Si 0.987 3.013 16 H -0.251 1.251 17 H -0.266 1.266 18 H -0.264 1.264 19 C -0.234 4.234 20 C 0.123 3.877 21 F -0.162 7.162 22 C -0.155 4.155 23 C -0.062 4.062 24 C -0.096 4.096 25 Cl -0.061 7.061 26 H 0.100 0.900 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.131 0.869 33 H 0.118 0.882 34 H 0.294 0.706 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.394 3.969 1.403 13.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 O -0.229 6.229 4 C 0.094 3.906 5 C -0.219 4.219 6 C 0.034 3.966 7 C -0.241 4.241 8 C -0.055 4.055 9 C -0.260 4.260 10 C 0.106 3.894 11 C -0.499 4.499 12 H 0.112 0.888 13 C -0.185 4.185 14 N -0.431 5.431 15 Si 0.807 3.193 16 H -0.174 1.174 17 H -0.191 1.191 18 H -0.189 1.189 19 C -0.254 4.254 20 C 0.103 3.897 21 F -0.141 7.141 22 C -0.173 4.173 23 C -0.081 4.081 24 C -0.123 4.123 25 Cl -0.032 7.032 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.127 0.873 36 H 0.140 0.860 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.437 4.391 1.309 13.255 hybrid contribution 0.998 -0.338 -0.495 1.165 sum -11.439 4.053 0.814 12.163 Atomic orbital electron populations 1.21778 0.90789 1.04201 1.03353 1.23125 0.97323 0.80642 1.02245 1.86113 1.17338 1.31233 1.88256 1.18551 0.83482 0.92129 0.96461 1.21350 0.92461 0.98404 1.09668 1.18660 0.92150 0.92403 0.93378 1.18179 1.01439 0.99566 1.04931 1.20472 0.97586 0.91602 0.95797 1.20960 1.01463 1.00830 1.02704 1.17780 0.91506 0.91651 0.88420 1.20044 0.97147 0.97913 1.34828 0.88794 1.26969 0.98929 1.00652 0.91914 1.69870 1.15815 1.26956 1.30499 0.85067 0.77871 0.77586 0.78766 1.17355 1.19119 1.18884 1.20880 1.02806 0.97210 1.04539 1.17534 0.96602 0.86104 0.89422 1.91334 1.95211 1.60491 1.67069 1.21237 1.00023 0.91468 1.04595 1.20935 0.89711 1.00333 0.97086 1.20254 0.91273 0.86201 1.14587 1.98321 1.65817 1.41787 1.97315 0.88173 0.91501 0.91746 0.91670 0.91111 0.83649 0.85106 0.86403 0.89497 0.87253 0.86007 0.82385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 10.28 71.98 0.74 -1.40 16 2 C 0.04 0.84 5.46 71.98 0.39 1.23 16 3 O -0.32 -8.57 9.58 -92.68 -0.89 -9.46 16 4 C 0.14 4.28 6.68 22.49 0.15 4.43 16 5 C -0.20 -6.44 8.49 22.62 0.19 -6.25 16 6 C 0.03 1.28 5.31 -20.04 -0.11 1.17 16 7 C -0.24 -10.21 5.50 -19.83 -0.11 -10.32 16 8 C -0.04 -1.47 9.44 22.22 0.21 -1.26 16 9 C -0.24 -10.63 9.73 22.47 0.22 -10.41 16 10 C 0.11 5.51 5.57 -21.28 -0.12 5.39 16 11 C -0.47 -23.22 9.03 23.38 0.21 -23.01 16 12 H 0.09 4.32 7.91 -2.91 -0.02 4.29 16 13 C 0.03 1.55 5.13 85.27 0.44 1.99 16 14 N -0.81 -40.00 10.96 21.84 0.24 -39.76 16 15 Si 0.99 34.96 29.60 68.60 2.03 36.99 16 16 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 17 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 18 H -0.26 -8.98 7.11 99.48 0.71 -8.28 16 19 C -0.23 -12.12 8.60 22.50 0.19 -11.93 16 20 C 0.12 5.89 7.10 22.32 0.16 6.05 16 21 F -0.16 -7.61 15.83 44.97 0.71 -6.90 16 22 C -0.15 -5.37 8.85 22.54 0.20 -5.17 16 23 C -0.06 -1.84 9.81 22.24 0.22 -1.62 16 24 C -0.10 -2.87 6.34 22.50 0.14 -2.73 16 25 Cl -0.06 -1.61 28.49 -2.72 -0.08 -1.69 16 26 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.06 1.31 7.66 -2.39 -0.02 1.30 16 30 H 0.07 1.34 7.66 -2.38 -0.02 1.33 16 31 H 0.15 4.22 6.27 -2.91 -0.02 4.20 16 32 H 0.13 4.38 8.04 -2.91 -0.02 4.36 16 33 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 34 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 35 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 36 H 0.12 4.36 7.74 -2.91 -0.02 4.34 16 37 H 0.16 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -56.06 337.36 6.25 -49.81 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.10 Total: 24.84 kcal Atomic # 6 Polarization: -56.96 SS G_CDS: 3.13 Total: -53.83 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.24 Total: -39.76 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.89 Total: -9.46 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.71 Total: -6.90 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -56.06 6.25 -49.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243572541.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.582 kcal (2) G-P(sol) polarization free energy of solvation -56.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds