Wall clock time and date at job start Tue Mar 31 2020 12:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21292 * 119.99847 * 2 1 4 4 C 1.46852 * 119.99794 * 179.97438 * 2 1 3 5 5 C 1.40147 * 120.09996 * 0.02562 * 4 2 1 6 6 C 1.37770 * 120.19524 * 179.97438 * 5 4 2 7 7 C 1.38540 * 120.38835 * 0.22876 * 6 5 4 8 8 F 1.35095 * 119.90296 * 179.74338 * 7 6 5 9 9 C 1.39939 * 120.18737 * 359.49305 * 7 6 5 10 10 C 1.47812 * 120.09644 * 180.25502 * 9 7 6 11 11 C 1.39095 * 120.32162 * 270.27327 * 10 9 7 12 12 C 1.38352 * 119.95100 * 180.02562 * 11 10 9 13 13 F 1.35105 * 119.69028 * 179.97438 * 12 11 10 14 14 C 1.39238 * 120.61974 * 359.97166 * 12 11 10 15 15 C 1.36342 * 120.65889 * 0.02562 * 14 12 11 16 16 C 1.40793 * 120.01792 * 359.76091 * 15 14 12 17 17 C 1.40803 * 120.29946 * 180.25607 * 16 15 14 18 18 H 1.08008 * 119.99544 * 150.01206 * 17 16 15 19 19 C 1.40016 * 120.00384 * 330.01351 * 17 16 15 20 20 N 1.30817 * 120.00464 * 161.92089 * 19 17 16 21 21 Si 1.86800 * 119.99999 * 341.91712 * 19 17 16 22 22 H 1.48497 * 109.47187 * 95.40161 * 21 19 17 23 23 H 1.48498 * 109.47577 * 215.40887 * 21 19 17 24 24 H 1.48507 * 109.47009 * 335.40507 * 21 19 17 25 25 C 1.39627 * 119.80721 * 0.52632 * 9 7 6 26 26 F 1.35098 * 120.19090 * 179.70770 * 25 9 7 27 27 H 1.09001 * 109.47090 * 270.00226 * 1 2 3 28 28 H 1.09002 * 109.46631 * 30.00365 * 1 2 3 29 29 H 1.08999 * 109.46804 * 150.00276 * 1 2 3 30 30 H 1.08003 * 119.89742 * 359.97274 * 5 4 2 31 31 H 1.07995 * 119.80696 * 179.97438 * 6 5 4 32 32 H 1.07995 * 120.02420 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.67065 * 180.02562 * 14 12 11 34 34 H 1.08002 * 119.98615 * 180.02562 * 15 14 12 35 35 H 0.96998 * 120.00394 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2413 -1.2718 0.0006 5 6 1.5426 -2.4867 0.0006 6 6 2.2294 -3.6810 0.0006 7 6 3.6148 -3.6927 0.0053 8 9 4.2783 -4.8695 0.0105 9 6 4.3287 -2.4892 -0.0005 10 6 5.8067 -2.5041 -0.0011 11 6 6.5094 -2.5114 1.1993 12 6 7.8928 -2.5248 1.1898 13 9 8.5700 -2.5313 2.3589 14 6 8.5937 -2.5317 -0.0133 15 6 7.9304 -2.5249 -1.2044 16 6 6.5227 -2.5158 -1.2266 17 6 5.8315 -2.5141 -2.4533 18 1 4.8576 -2.9755 -2.5250 19 6 6.4068 -1.9144 -3.5802 20 7 5.9608 -2.2048 -4.7753 21 14 7.8112 -0.6995 -3.3773 22 1 9.1060 -1.4076 -3.5425 23 1 7.6956 0.3669 -4.4042 24 1 7.7485 -0.0920 -2.0237 25 6 3.6408 -1.2741 0.0000 26 9 4.3222 -0.1076 0.0003 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 0.4626 -2.4866 0.0006 31 1 1.6847 -4.6135 0.0010 32 1 5.9755 -2.5058 2.1380 33 1 9.6736 -2.5426 -0.0028 34 1 8.4850 -2.5308 -2.1311 35 1 6.3595 -1.7896 -5.5559 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244618584.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:11 Heat of formation + Delta-G solvation = -147.803922 kcal Electronic energy + Delta-G solvation = -26629.931544 eV Core-core repulsion = 22335.358415 eV Total energy + Delta-G solvation = -4294.573129 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.076 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.01475 -49.97445 -49.49042 -40.79223 -39.93149 -38.67151 -35.64524 -33.95848 -32.21924 -32.18644 -30.80276 -29.67091 -26.94260 -25.01889 -24.33688 -23.44187 -22.36791 -20.79521 -19.61756 -19.25973 -18.40990 -18.33481 -17.55404 -17.25001 -17.08677 -16.69340 -16.57135 -16.36200 -16.23652 -15.89787 -15.77210 -15.73517 -15.34070 -15.09885 -14.83236 -14.58880 -14.05711 -14.01195 -13.77106 -13.45045 -13.08430 -13.04536 -12.84601 -12.76760 -12.74697 -12.42287 -12.31371 -12.05560 -11.62010 -11.16794 -10.82496 -9.85265 -9.82860 -9.82729 -9.50843 -9.07177 -6.62857 -0.62107 0.00515 0.38314 0.50991 1.16329 1.24867 1.30204 1.38644 1.99898 2.33960 2.41383 2.79147 3.03223 3.18810 3.34793 3.45458 3.68312 3.87362 4.01160 4.03401 4.11468 4.21840 4.52229 4.59249 4.70932 4.72917 4.81760 4.84529 4.87051 4.94146 4.98596 5.07490 5.23560 5.30299 5.37247 5.47962 5.66529 5.72275 6.00025 6.15381 6.50140 6.52011 6.61264 7.98986 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.006153 C = 0.005249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.543963 B = 4549.867421 C = 5332.643290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.390 3.610 3 O -0.505 6.505 4 C -0.236 4.236 5 C 0.001 3.999 6 C -0.164 4.164 7 C 0.147 3.853 8 F -0.133 7.133 9 C -0.103 4.103 10 C -0.163 4.163 11 C -0.085 4.085 12 C -0.047 4.047 13 F -0.161 7.161 14 C -0.094 4.094 15 C -0.221 4.221 16 C 0.087 3.913 17 C -0.451 4.451 18 H 0.067 0.933 19 C 0.057 3.943 20 N -0.820 5.820 21 Si 0.945 3.055 22 H -0.243 1.243 23 H -0.272 1.272 24 H -0.262 1.262 25 C 0.159 3.841 26 F -0.133 7.133 27 H 0.127 0.873 28 H 0.090 0.910 29 H 0.122 0.878 30 H 0.213 0.787 31 H 0.189 0.811 32 H 0.126 0.874 33 H 0.140 0.860 34 H 0.118 0.882 35 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.104 -1.605 6.729 13.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.272 3.728 3 O -0.383 6.383 4 C -0.238 4.238 5 C -0.016 4.016 6 C -0.182 4.182 7 C 0.127 3.873 8 F -0.112 7.112 9 C -0.105 4.105 10 C -0.165 4.165 11 C -0.104 4.104 12 C -0.067 4.067 13 F -0.140 7.140 14 C -0.113 4.113 15 C -0.240 4.240 16 C 0.084 3.916 17 C -0.479 4.479 18 H 0.085 0.915 19 C -0.161 4.161 20 N -0.444 5.444 21 Si 0.768 3.232 22 H -0.168 1.168 23 H -0.199 1.199 24 H -0.186 1.186 25 C 0.140 3.860 26 F -0.111 7.111 27 H 0.145 0.855 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.229 0.771 31 H 0.207 0.793 32 H 0.144 0.856 33 H 0.158 0.842 34 H 0.135 0.865 35 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.767 -1.064 6.450 13.461 hybrid contribution 1.615 0.417 -0.164 1.676 sum -10.151 -0.647 6.286 11.958 Atomic orbital electron populations 1.22270 0.87934 1.06878 1.06980 1.23172 0.94398 0.85699 0.69575 1.90607 1.73653 1.35573 1.38514 1.21036 0.90616 0.99171 1.12945 1.21758 1.02699 0.87138 0.90038 1.21532 0.89774 1.02420 1.04467 1.18276 0.91289 0.79484 0.98265 1.91497 1.81881 1.44715 1.93061 1.18650 0.93611 0.91618 1.06602 1.18196 0.90408 1.15436 0.92458 1.20824 0.92374 0.99571 0.97604 1.17179 0.89681 1.18841 0.80950 1.91333 1.80361 1.95689 1.46610 1.20698 1.00372 0.99247 0.90951 1.20757 0.94011 1.11984 0.97206 1.17865 0.92007 0.89239 0.92450 1.19281 1.04337 1.32095 0.92190 0.91497 1.26723 0.98674 0.96886 0.93835 1.69659 1.39218 1.35666 0.99889 0.85787 0.79214 0.78803 0.79404 1.16800 1.19854 1.18613 1.18272 0.89975 0.80331 0.97466 1.91499 1.80563 1.46330 1.92740 0.85517 0.89104 0.85921 0.77079 0.79349 0.85633 0.84243 0.86485 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 9.75 71.24 0.69 -1.61 16 2 C 0.39 10.65 7.22 27.94 0.20 10.85 16 3 O -0.50 -19.28 16.07 -3.07 -0.05 -19.33 16 4 C -0.24 -6.94 5.87 -20.15 -0.12 -7.06 16 5 C 0.00 0.02 9.35 22.62 0.21 0.23 16 6 C -0.16 -3.70 9.99 22.23 0.22 -3.48 16 7 C 0.15 5.10 7.29 22.75 0.17 5.27 16 8 F -0.13 -5.04 16.81 44.97 0.76 -4.28 16 9 C -0.10 -4.31 4.11 -20.00 -0.08 -4.39 16 10 C -0.16 -7.76 4.64 -19.62 -0.09 -7.85 16 11 C -0.08 -3.79 9.75 22.50 0.22 -3.57 16 12 C -0.05 -2.07 7.31 22.54 0.16 -1.90 16 13 F -0.16 -6.67 17.26 44.97 0.78 -5.90 16 14 C -0.09 -4.08 9.94 22.07 0.22 -3.86 16 15 C -0.22 -10.48 7.10 22.45 0.16 -10.33 16 16 C 0.09 4.48 5.12 -21.11 -0.11 4.37 16 17 C -0.45 -24.46 8.94 23.33 0.21 -24.25 16 18 H 0.07 3.85 7.55 -2.91 -0.02 3.83 16 19 C 0.06 2.99 5.40 85.28 0.46 3.45 16 20 N -0.82 -42.80 13.93 21.84 0.30 -42.50 16 21 Si 0.94 42.22 24.52 68.60 1.68 43.91 16 22 H -0.24 -9.91 6.71 99.48 0.67 -9.24 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.26 -12.57 6.86 99.48 0.68 -11.89 16 25 C 0.16 6.49 7.27 23.02 0.17 6.66 16 26 F -0.13 -6.39 15.10 44.97 0.68 -5.71 16 27 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.17 8.14 -2.39 -0.02 1.16 16 29 H 0.12 0.67 6.45 -2.39 -0.02 0.65 16 30 H 0.21 1.22 6.33 -2.91 -0.02 1.21 16 31 H 0.19 2.60 8.06 -2.91 -0.02 2.58 16 32 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 33 H 0.14 5.09 8.06 -2.91 -0.02 5.07 16 34 H 0.12 5.36 4.74 -2.91 -0.01 5.34 16 35 H 0.30 13.99 8.30 -92.71 -0.77 13.22 16 Total: -1.00 -72.19 317.23 7.95 -64.23 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: 1.11 Total: 7.05 kcal Atomic # 6 Polarization: -40.16 SS G_CDS: 2.70 Total: -37.47 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.30 Total: -42.50 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.05 Total: -19.33 kcal Atomic # 9 Polarization: -18.10 SS G_CDS: 2.21 Total: -15.89 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.68 Total: 43.91 kcal Total: -72.19 7.95 -64.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244618584.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.571 kcal (2) G-P(sol) polarization free energy of solvation -72.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds