Wall clock time and date at job start Tue Mar 31 2020 12:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21292 * 120.00235 * 2 1 4 4 C 1.46847 * 119.99768 * 180.02562 * 2 1 3 5 5 C 1.40094 * 120.11462 * 6.80100 * 4 2 1 6 6 C 1.37710 * 120.12022 * 180.23496 * 5 4 2 7 7 C 1.38618 * 120.35624 * 359.49260 * 6 5 4 8 8 F 1.35105 * 119.88806 * 180.25325 * 7 6 5 9 9 C 1.39608 * 120.22463 * 0.28374 * 7 6 5 10 10 C 1.48365 * 120.06275 * 179.97438 * 9 7 6 11 11 C 1.39595 * 120.01599 * 89.72173 * 10 9 7 12 12 C 1.38476 * 120.41764 * 179.76032 * 11 10 9 13 13 C 1.37658 * 120.45167 * 0.51440 * 12 11 10 14 14 C 1.40756 * 120.01676 * 359.74060 * 13 12 11 15 15 C 1.41319 * 120.20358 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00216 * 153.09283 * 15 14 13 17 17 C 1.39927 * 120.00158 * 333.09211 * 15 14 13 18 18 N 1.30854 * 120.00189 * 344.60337 * 17 15 14 19 19 Si 1.86799 * 119.99978 * 164.60340 * 17 15 14 20 20 H 1.48502 * 109.47351 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47410 * 120.00366 * 19 17 15 22 22 H 1.48503 * 109.47184 * 239.99679 * 19 17 15 23 23 C 1.39071 * 120.01402 * 269.99114 * 10 9 7 24 24 F 1.35097 * 120.22554 * 359.96075 * 23 10 9 25 25 C 1.39264 * 119.87159 * 359.97053 * 9 7 6 26 26 F 1.35097 * 120.17339 * 180.02562 * 25 9 7 27 27 H 1.09004 * 109.47496 * 174.81485 * 1 2 3 28 28 H 1.08993 * 109.47606 * 294.81340 * 1 2 3 29 29 H 1.09009 * 109.47397 * 54.81677 * 1 2 3 30 30 H 1.08000 * 119.93993 * 0.02562 * 5 4 2 31 31 H 1.08002 * 119.82027 * 179.76985 * 6 5 4 32 32 H 1.07994 * 119.79288 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.77026 * 180.25449 * 12 11 10 34 34 H 1.07996 * 119.99044 * 179.76415 * 13 12 11 35 35 H 0.96991 * 120.00320 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2411 -1.2718 -0.0006 5 6 1.5504 -2.4821 -0.1446 6 6 2.2383 -3.6750 -0.1403 7 6 3.6177 -3.6878 -0.0043 8 9 4.2836 -4.8634 -0.0065 9 6 4.3213 -2.4901 0.1356 10 6 5.7976 -2.5080 0.2815 11 6 6.6120 -2.4523 -0.8509 12 6 7.9909 -2.4635 -0.7241 13 6 8.5765 -2.5403 0.5193 14 6 7.7732 -2.6027 1.6734 15 6 8.3702 -2.6811 2.9518 16 1 7.8451 -2.3044 3.8171 17 6 9.6418 -3.2469 3.0967 18 7 10.1515 -3.9670 2.1302 19 14 10.6117 -2.9744 4.6697 20 1 9.8191 -2.1310 5.6002 21 1 10.8956 -4.2841 5.3095 22 1 11.8914 -2.2919 4.3503 23 6 6.3708 -2.5860 1.5462 24 9 5.5875 -2.6448 2.6454 25 6 3.6346 -1.2785 0.1378 26 9 4.3093 -0.1159 0.2722 27 1 -0.3634 -1.0235 -0.0929 28 1 -0.3634 0.4312 0.9327 29 1 -0.3634 0.5922 -0.8400 30 1 0.4762 -2.4797 -0.2559 31 1 1.7006 -4.6055 -0.2480 32 1 6.1638 -2.3966 -1.8319 33 1 8.6110 -2.4158 -1.6071 34 1 9.6527 -2.5524 0.6093 35 1 11.0330 -4.3589 2.2305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244618607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:35 Heat of formation + Delta-G solvation = -130.350733 kcal Electronic energy + Delta-G solvation = -26211.904001 eV Core-core repulsion = 21918.087699 eV Total energy + Delta-G solvation = -4293.816302 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.81145 -48.69129 -47.36051 -39.75859 -38.23286 -37.17390 -34.07585 -32.38174 -31.07654 -29.81004 -29.55149 -27.96972 -25.43279 -23.96009 -23.05693 -21.22442 -20.85744 -19.70665 -18.14819 -17.40116 -17.22492 -16.46503 -16.13358 -15.96154 -15.57463 -15.31063 -15.16125 -14.88796 -14.72909 -14.62427 -14.36703 -14.25817 -14.07167 -13.25052 -13.13966 -12.94571 -12.47777 -12.40194 -12.23035 -12.01756 -11.80942 -11.77119 -11.55428 -11.29946 -11.15131 -10.81759 -10.50910 -10.03032 -9.85752 -9.71173 -9.34592 -8.78138 -8.77433 -7.66142 -7.46600 -6.89509 -4.51623 0.39854 1.01470 2.20225 2.44386 2.57822 3.02709 3.06414 3.09869 3.39829 3.75745 3.85799 3.98669 4.34814 4.41825 4.47378 4.77554 4.83948 4.97071 5.17558 5.19604 5.35964 5.57161 5.65860 5.73529 5.83790 5.92037 5.95459 6.00340 6.14761 6.42419 6.63818 6.78579 6.92806 7.06168 7.30685 7.41340 7.43708 7.75775 7.84769 7.94632 8.40877 8.63511 8.70140 10.04944 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.003958 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.644110 B = 7073.146437 C = 7429.979531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.394 3.606 3 O -0.448 6.448 4 C -0.231 4.231 5 C -0.028 4.028 6 C -0.183 4.183 7 C 0.175 3.825 8 F -0.115 7.115 9 C -0.101 4.101 10 C -0.079 4.079 11 C -0.189 4.189 12 C -0.111 4.111 13 C -0.132 4.132 14 C 0.086 3.914 15 C -0.453 4.453 16 H 0.084 0.916 17 C 0.076 3.924 18 N -0.791 5.791 19 Si 0.914 3.086 20 H -0.259 1.259 21 H -0.272 1.272 22 H -0.270 1.270 23 C 0.002 3.998 24 F -0.157 7.157 25 C 0.201 3.799 26 F -0.101 7.101 27 H 0.083 0.917 28 H 0.096 0.904 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.677 0.525 -4.910 15.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C 0.272 3.728 3 O -0.323 6.323 4 C -0.233 4.233 5 C -0.046 4.046 6 C -0.202 4.202 7 C 0.155 3.845 8 F -0.093 7.093 9 C -0.103 4.103 10 C -0.080 4.080 11 C -0.209 4.209 12 C -0.129 4.129 13 C -0.151 4.151 14 C 0.083 3.917 15 C -0.482 4.482 16 H 0.102 0.898 17 C -0.142 4.142 18 N -0.416 5.416 19 Si 0.738 3.262 20 H -0.182 1.182 21 H -0.198 1.198 22 H -0.195 1.195 23 C -0.018 4.018 24 F -0.136 7.136 25 C 0.181 3.819 26 F -0.078 7.078 27 H 0.102 0.898 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.146 0.854 35 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -14.115 0.934 -4.907 14.973 hybrid contribution 0.629 -0.247 0.844 1.081 sum -13.486 0.687 -4.064 14.102 Atomic orbital electron populations 1.22200 0.93303 1.04724 1.05053 1.22212 0.91736 0.87080 0.71801 1.90627 1.71913 1.33934 1.35790 1.20565 0.92261 0.96881 1.13556 1.21106 1.00103 0.89564 0.93791 1.21035 0.91885 1.00087 1.07180 1.17795 0.89565 0.80792 0.96303 1.91579 1.80939 1.44150 1.92618 1.18939 0.95486 0.90624 1.05286 1.17854 0.87980 1.08732 0.93408 1.20166 0.93215 1.12614 0.94904 1.20642 0.93641 1.01530 0.97092 1.21279 1.00157 1.03164 0.90546 1.17543 0.88256 0.90909 0.94970 1.19541 1.00345 1.34175 0.94114 0.89800 1.25907 0.97344 0.92431 0.98564 1.69798 1.16608 1.22214 1.32978 0.86152 0.79531 0.79212 0.81300 1.18212 1.19770 1.19484 1.17814 0.88741 1.14876 0.80394 1.91279 1.74479 1.94830 1.53034 1.17691 0.88257 0.81417 0.94570 1.91614 1.79837 1.45029 1.91347 0.89788 0.88552 0.88815 0.83158 0.83469 0.88358 0.88144 0.85399 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.44 10.19 36.00 0.37 -1.07 16 2 C 0.39 5.14 7.20 -30.83 -0.22 4.92 16 3 O -0.45 -7.75 16.10 5.55 0.09 -7.66 16 4 C -0.23 -3.24 5.87 -105.05 -0.62 -3.86 16 5 C -0.03 -0.28 9.43 -39.08 -0.37 -0.65 16 6 C -0.18 -2.17 9.99 -39.63 -0.40 -2.56 16 7 C 0.18 2.95 7.28 -38.93 -0.28 2.66 16 8 F -0.11 -2.12 16.81 2.25 0.04 -2.08 16 9 C -0.10 -2.00 4.93 -104.84 -0.52 -2.51 16 10 C -0.08 -1.83 4.57 -104.91 -0.48 -2.31 16 11 C -0.19 -4.22 9.78 -38.99 -0.38 -4.60 16 12 C -0.11 -2.51 10.01 -39.71 -0.40 -2.91 16 13 C -0.13 -3.34 8.67 -38.84 -0.34 -3.68 16 14 C 0.09 2.34 5.56 -106.80 -0.59 1.74 16 15 C -0.45 -12.20 8.76 -37.78 -0.33 -12.53 16 16 H 0.08 2.25 7.76 -52.49 -0.41 1.84 16 17 C 0.08 1.89 5.17 -17.34 -0.09 1.80 16 18 N -0.79 -19.94 10.97 55.55 0.61 -19.33 16 19 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 20 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 C 0.00 0.05 7.28 -38.29 -0.28 -0.23 16 24 F -0.16 -4.09 16.29 2.25 0.04 -4.05 16 25 C 0.20 3.72 7.26 -38.53 -0.28 3.44 16 26 F -0.10 -2.13 15.12 2.25 0.03 -2.10 16 27 H 0.08 0.39 5.62 -51.93 -0.29 0.09 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 30 H 0.15 0.84 5.94 -52.49 -0.31 0.52 16 31 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 33 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 34 H 0.13 3.27 6.24 -52.49 -0.33 2.94 16 35 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -31.08 322.44 -7.15 -38.23 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -2.59 Total: 0.91 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: -5.20 Total: -22.36 kcal Atomic # 7 Polarization: -19.94 SS G_CDS: 0.61 Total: -19.33 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.09 Total: -7.66 kcal Atomic # 9 Polarization: -8.34 SS G_CDS: 0.11 Total: -8.23 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.08 -7.15 -38.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244618607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.118 kcal (2) G-P(sol) polarization free energy of solvation -31.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds