Wall clock time and date at job start Tue Mar 31 2020 12:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21292 * 120.00235 * 2 1 4 4 C 1.46847 * 119.99768 * 180.02562 * 2 1 3 5 5 C 1.40094 * 120.11462 * 6.80100 * 4 2 1 6 6 C 1.37710 * 120.12022 * 180.23496 * 5 4 2 7 7 C 1.38618 * 120.35624 * 359.49260 * 6 5 4 8 8 F 1.35105 * 119.88806 * 180.25325 * 7 6 5 9 9 C 1.39608 * 120.22463 * 0.28374 * 7 6 5 10 10 C 1.48365 * 120.06275 * 179.97438 * 9 7 6 11 11 C 1.39595 * 120.01599 * 89.72173 * 10 9 7 12 12 C 1.38476 * 120.41764 * 179.76032 * 11 10 9 13 13 C 1.37658 * 120.45167 * 0.51440 * 12 11 10 14 14 C 1.40756 * 120.01676 * 359.74060 * 13 12 11 15 15 C 1.41319 * 120.20358 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00216 * 153.09283 * 15 14 13 17 17 C 1.39927 * 120.00158 * 333.09211 * 15 14 13 18 18 N 1.30854 * 120.00189 * 344.60337 * 17 15 14 19 19 Si 1.86799 * 119.99978 * 164.60340 * 17 15 14 20 20 H 1.48502 * 109.47351 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47410 * 120.00366 * 19 17 15 22 22 H 1.48503 * 109.47184 * 239.99679 * 19 17 15 23 23 C 1.39071 * 120.01402 * 269.99114 * 10 9 7 24 24 F 1.35097 * 120.22554 * 359.96075 * 23 10 9 25 25 C 1.39264 * 119.87159 * 359.97053 * 9 7 6 26 26 F 1.35097 * 120.17339 * 180.02562 * 25 9 7 27 27 H 1.09004 * 109.47496 * 174.81485 * 1 2 3 28 28 H 1.08993 * 109.47606 * 294.81340 * 1 2 3 29 29 H 1.09009 * 109.47397 * 54.81677 * 1 2 3 30 30 H 1.08000 * 119.93993 * 0.02562 * 5 4 2 31 31 H 1.08002 * 119.82027 * 179.76985 * 6 5 4 32 32 H 1.07994 * 119.79288 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.77026 * 180.25449 * 12 11 10 34 34 H 1.07996 * 119.99044 * 179.76415 * 13 12 11 35 35 H 0.96991 * 120.00320 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 6 2.2411 -1.2718 -0.0006 5 6 1.5504 -2.4821 -0.1446 6 6 2.2383 -3.6750 -0.1403 7 6 3.6177 -3.6878 -0.0043 8 9 4.2836 -4.8634 -0.0065 9 6 4.3213 -2.4901 0.1356 10 6 5.7976 -2.5080 0.2815 11 6 6.6120 -2.4523 -0.8509 12 6 7.9909 -2.4635 -0.7241 13 6 8.5765 -2.5403 0.5193 14 6 7.7732 -2.6027 1.6734 15 6 8.3702 -2.6811 2.9518 16 1 7.8451 -2.3044 3.8171 17 6 9.6418 -3.2469 3.0967 18 7 10.1515 -3.9670 2.1302 19 14 10.6117 -2.9744 4.6697 20 1 9.8191 -2.1310 5.6002 21 1 10.8956 -4.2841 5.3095 22 1 11.8914 -2.2919 4.3503 23 6 6.3708 -2.5860 1.5462 24 9 5.5875 -2.6448 2.6454 25 6 3.6346 -1.2785 0.1378 26 9 4.3093 -0.1159 0.2722 27 1 -0.3634 -1.0235 -0.0929 28 1 -0.3634 0.4312 0.9327 29 1 -0.3634 0.5922 -0.8400 30 1 0.4762 -2.4797 -0.2559 31 1 1.7006 -4.6055 -0.2480 32 1 6.1638 -2.3966 -1.8319 33 1 8.6110 -2.4158 -1.6071 34 1 9.6527 -2.5524 0.6093 35 1 11.0330 -4.3589 2.2305 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244618607.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:35 Heat of formation + Delta-G solvation = -147.407455 kcal Electronic energy + Delta-G solvation = -26212.643636 eV Core-core repulsion = 21918.087699 eV Total energy + Delta-G solvation = -4294.555937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.076 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.15112 -50.14113 -49.36187 -40.85925 -39.65449 -38.76460 -35.89849 -33.77633 -32.22187 -31.64874 -30.65840 -29.37272 -27.37951 -25.14092 -24.36817 -22.89364 -22.59694 -20.96923 -19.52058 -19.04833 -18.49045 -18.11733 -17.59425 -17.50009 -16.99738 -16.89150 -16.51739 -16.44427 -16.09287 -16.03583 -15.84193 -15.80190 -15.44050 -14.92982 -14.69615 -14.12431 -13.94227 -13.68249 -13.59946 -13.40457 -13.19515 -13.04701 -12.86291 -12.82488 -12.68916 -12.48573 -12.23574 -11.86835 -11.60982 -11.19687 -10.87471 -10.06396 -9.94785 -9.57952 -9.38111 -8.77862 -6.53716 -0.73451 -0.15856 0.57530 0.69880 1.16541 1.33012 1.41264 1.48857 2.14657 2.30252 2.51672 2.64513 2.96389 3.19989 3.29107 3.37414 3.69381 3.81679 3.90530 4.04493 4.34350 4.39808 4.58098 4.68977 4.69689 4.72339 4.74274 4.84593 4.85208 4.93417 5.02500 5.15060 5.26217 5.41347 5.53893 5.58461 5.84788 5.87805 6.02171 6.42157 6.46677 6.66867 6.73807 8.19676 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.019204 B = 0.003958 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.644110 B = 7073.146437 C = 7429.979531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.392 3.608 3 O -0.503 6.503 4 C -0.230 4.230 5 C 0.009 3.991 6 C -0.156 4.156 7 C 0.153 3.847 8 F -0.133 7.133 9 C -0.142 4.142 10 C -0.071 4.071 11 C -0.193 4.193 12 C -0.106 4.106 13 C -0.154 4.154 14 C 0.058 3.942 15 C -0.495 4.495 16 H 0.068 0.932 17 C 0.040 3.960 18 N -0.816 5.816 19 Si 0.988 3.012 20 H -0.265 1.265 21 H -0.260 1.260 22 H -0.254 1.254 23 C -0.039 4.039 24 F -0.167 7.167 25 C 0.161 3.839 26 F -0.132 7.132 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.219 0.781 31 H 0.196 0.804 32 H 0.126 0.874 33 H 0.134 0.866 34 H 0.120 0.880 35 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.090 -0.484 -5.864 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.273 3.727 3 O -0.382 6.382 4 C -0.232 4.232 5 C -0.008 4.008 6 C -0.175 4.175 7 C 0.133 3.867 8 F -0.111 7.111 9 C -0.143 4.143 10 C -0.072 4.072 11 C -0.212 4.212 12 C -0.124 4.124 13 C -0.173 4.173 14 C 0.055 3.945 15 C -0.523 4.523 16 H 0.086 0.914 17 C -0.176 4.176 18 N -0.441 5.441 19 Si 0.807 3.193 20 H -0.189 1.189 21 H -0.184 1.184 22 H -0.178 1.178 23 C -0.059 4.059 24 F -0.146 7.146 25 C 0.142 3.858 26 F -0.111 7.111 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.236 0.764 31 H 0.213 0.787 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.138 0.862 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.546 -0.095 -5.888 18.508 hybrid contribution 1.518 0.041 1.018 1.828 sum -16.028 -0.054 -4.870 16.752 Atomic orbital electron populations 1.22275 0.87741 1.07773 1.06299 1.23160 0.94402 0.85557 0.69558 1.90623 1.73574 1.35582 1.38376 1.21085 0.90376 0.99532 1.12228 1.21877 1.02785 0.86916 0.89202 1.21607 0.89320 1.02756 1.03769 1.18212 0.91514 0.79162 0.97810 1.91532 1.81754 1.44815 1.93027 1.18917 0.93677 0.92660 1.09082 1.18238 0.90938 1.05688 0.92364 1.20609 0.93221 1.11385 0.96029 1.21016 0.94409 0.99667 0.97291 1.21278 0.99718 1.05063 0.91276 1.17936 0.89208 0.91484 0.95852 1.19679 1.02254 1.36579 0.93824 0.91390 1.26732 0.97353 0.91348 1.02169 1.69813 1.17368 1.22178 1.34711 0.85082 0.78029 0.79482 0.76685 1.18893 1.18393 1.17840 1.18189 0.88862 1.17460 0.81438 1.91219 1.74591 1.95174 1.53653 1.18157 0.90279 0.80082 0.97327 1.91524 1.80826 1.46560 1.92141 0.85833 0.87311 0.87228 0.76445 0.78709 0.85602 0.84803 0.86196 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.71 10.19 71.23 0.73 -0.99 16 2 C 0.39 9.30 7.20 27.94 0.20 9.51 16 3 O -0.50 -17.55 16.10 -3.07 -0.05 -17.60 16 4 C -0.23 -5.92 5.87 -20.14 -0.12 -6.04 16 5 C 0.01 0.14 9.43 22.60 0.21 0.35 16 6 C -0.16 -2.95 9.99 22.24 0.22 -2.73 16 7 C 0.15 4.97 7.28 22.69 0.17 5.14 16 8 F -0.13 -4.91 16.81 44.97 0.76 -4.15 16 9 C -0.14 -5.71 4.93 -20.00 -0.10 -5.81 16 10 C -0.07 -3.49 4.57 -20.05 -0.09 -3.58 16 11 C -0.19 -8.86 9.78 22.65 0.22 -8.64 16 12 C -0.11 -4.93 10.01 22.19 0.22 -4.71 16 13 C -0.15 -8.23 8.67 22.75 0.20 -8.04 16 14 C 0.06 3.37 5.56 -21.27 -0.12 3.25 16 15 C -0.49 -28.53 8.76 23.44 0.21 -28.32 16 16 H 0.07 3.96 7.76 -2.91 -0.02 3.94 16 17 C 0.04 2.07 5.17 85.25 0.44 2.51 16 18 N -0.82 -42.50 10.97 21.82 0.24 -42.26 16 19 Si 0.99 39.19 29.59 68.60 2.03 41.22 16 20 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 21 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 22 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 23 C -0.04 -2.20 7.28 23.10 0.17 -2.04 16 24 F -0.17 -9.41 16.29 44.97 0.73 -8.67 16 25 C 0.16 6.11 7.26 22.95 0.17 6.28 16 26 F -0.13 -6.02 15.12 44.97 0.68 -5.34 16 27 H 0.12 0.11 5.62 -2.38 -0.01 0.09 16 28 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.22 0.31 5.94 -2.91 -0.02 0.29 16 31 H 0.20 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.13 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.13 5.21 8.06 -2.91 -0.02 5.18 16 34 H 0.12 6.48 6.24 -2.91 -0.02 6.46 16 35 H 0.30 13.61 8.30 -92.72 -0.77 12.84 16 Total: -1.00 -79.30 322.44 8.28 -71.02 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.17 Total: 9.63 kcal Atomic # 6 Polarization: -46.58 SS G_CDS: 2.72 Total: -43.86 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.24 Total: -42.26 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.05 Total: -17.60 kcal Atomic # 9 Polarization: -20.33 SS G_CDS: 2.17 Total: -18.16 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Total: -79.30 8.28 -71.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244618607.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.385 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds