Wall clock time and date at job start Tue Mar 31 2020 12:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21295 * 120.00354 * 2 1 4 4 C 1.46857 * 119.99393 * 179.97438 * 2 1 3 5 5 C 1.40136 * 120.10185 * 0.02562 * 4 2 1 6 6 C 1.37773 * 120.18842 * 179.97438 * 5 4 2 7 7 C 1.38538 * 120.39009 * 359.71828 * 6 5 4 8 8 F 1.35091 * 119.90678 * 180.30017 * 7 6 5 9 9 C 1.39928 * 120.18695 * 0.56501 * 7 6 5 10 10 C 1.47879 * 120.09140 * 179.71915 * 9 7 6 11 11 C 1.39976 * 119.89300 * 269.71901 * 10 9 7 12 12 C 1.36209 * 120.13558 * 179.97438 * 11 10 9 13 13 C 1.40978 * 119.93140 * 359.97438 * 12 11 10 14 14 C 1.41014 * 120.10432 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99951 * 204.71563 * 14 13 12 16 16 C 1.39977 * 119.99417 * 24.71236 * 14 13 12 17 17 N 1.30819 * 120.00148 * 17.99100 * 16 14 13 18 18 Si 1.86799 * 119.99625 * 197.98646 * 16 14 13 19 19 H 1.48496 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47138 * 120.00328 * 18 16 14 21 21 H 1.48506 * 109.47022 * 240.00407 * 18 16 14 22 22 C 1.40882 * 119.80018 * 0.02562 * 13 12 11 23 23 C 1.36451 * 119.85844 * 359.72993 * 22 13 12 24 24 F 1.35098 * 119.96509 * 180.25237 * 23 22 13 25 25 C 1.39601 * 119.81048 * 359.43741 * 9 7 6 26 26 F 1.35093 * 120.19154 * 180.30575 * 25 9 7 27 27 H 1.09000 * 109.47108 * 270.00648 * 1 2 3 28 28 H 1.09003 * 109.46664 * 29.99965 * 1 2 3 29 29 H 1.08990 * 109.47359 * 149.99764 * 1 2 3 30 30 H 1.08000 * 119.90456 * 0.02562 * 5 4 2 31 31 H 1.07999 * 119.80517 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.92991 * 359.97438 * 11 10 9 33 33 H 1.08005 * 120.03490 * 179.97438 * 12 11 10 34 34 H 0.97000 * 119.99556 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.07171 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 1.5425 -2.4867 0.0006 6 6 2.2295 -3.6809 0.0006 7 6 3.6148 -3.6926 -0.0053 8 9 4.2784 -4.8693 -0.0114 9 6 4.3286 -2.4891 0.0006 10 6 5.8073 -2.5041 0.0006 11 6 6.5049 -2.5111 1.2141 12 6 7.8669 -2.5255 1.2199 13 6 8.5754 -2.5337 0.0011 14 6 9.9855 -2.5480 0.0028 15 1 10.5304 -2.1632 -0.8465 16 6 10.6788 -3.0609 1.1054 17 7 10.0637 -3.8338 1.9630 18 14 12.4823 -2.6416 1.3520 19 1 12.9398 -1.7563 0.2510 20 1 12.6552 -1.9443 2.6516 21 1 13.2856 -3.8907 1.3497 22 6 7.8705 -2.5266 -1.2186 23 6 6.5060 -2.5173 -1.2146 24 9 5.8278 -2.5156 -2.3830 25 6 3.6408 -1.2743 0.0006 26 9 4.3222 -0.1078 0.0001 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 0.4625 -2.4867 -0.0003 31 1 1.6848 -4.6135 0.0002 32 1 5.9621 -2.5052 2.1478 33 1 8.4035 -2.5305 2.1572 34 1 10.5443 -4.1895 2.7269 35 1 8.4088 -2.5333 -2.1549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244619023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:40 Heat of formation + Delta-G solvation = -134.277431 kcal Electronic energy + Delta-G solvation = -26001.772937 eV Core-core repulsion = 21707.786361 eV Total energy + Delta-G solvation = -4293.986577 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.076 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.72622 -48.59677 -47.84736 -39.68346 -38.17096 -37.25533 -34.08682 -32.28074 -31.04845 -29.76971 -29.25024 -28.57274 -25.59574 -23.71259 -22.69136 -21.22465 -21.04958 -19.63715 -17.99126 -17.81730 -17.12924 -16.65663 -15.97404 -15.64822 -15.48422 -15.20800 -15.11998 -14.87300 -14.74882 -14.65215 -14.59834 -14.45451 -14.14478 -13.30757 -13.10707 -12.70771 -12.52710 -12.39919 -12.32725 -12.14445 -12.00096 -11.72597 -11.55084 -11.27659 -11.11916 -10.68650 -10.62490 -10.25450 -9.83574 -9.69105 -9.37056 -8.70893 -8.63816 -7.77987 -7.45302 -7.05423 -4.65544 0.46708 1.10564 2.25973 2.38658 2.78697 2.94833 2.97969 3.02040 3.48325 3.74505 3.82614 4.05497 4.28674 4.45625 4.57547 4.86056 4.93583 5.07526 5.20288 5.23057 5.38965 5.50318 5.65315 5.74437 5.91351 6.04808 6.07355 6.08469 6.09838 6.66907 6.73175 6.76161 6.86671 6.95311 7.39265 7.41664 7.45424 7.73183 7.80492 7.97438 8.35264 8.58285 8.65582 9.87880 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.003640 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.747301 B = 7691.215052 C = 8135.632578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.393 3.607 3 O -0.448 6.448 4 C -0.233 4.233 5 C -0.031 4.031 6 C -0.185 4.185 7 C 0.167 3.833 8 F -0.117 7.117 9 C -0.075 4.075 10 C -0.254 4.254 11 C -0.047 4.047 12 C -0.174 4.174 13 C 0.139 3.861 14 C -0.442 4.442 15 H 0.086 0.914 16 C 0.075 3.925 17 N -0.773 5.773 18 Si 0.915 3.085 19 H -0.257 1.257 20 H -0.268 1.268 21 H -0.271 1.271 22 C -0.266 4.266 23 C 0.153 3.847 24 F -0.164 7.164 25 C 0.194 3.806 26 F -0.102 7.102 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.286 0.714 35 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 0.130 0.055 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.271 3.729 3 O -0.323 6.323 4 C -0.235 4.235 5 C -0.049 4.049 6 C -0.204 4.204 7 C 0.148 3.852 8 F -0.095 7.095 9 C -0.077 4.077 10 C -0.256 4.256 11 C -0.065 4.065 12 C -0.194 4.194 13 C 0.136 3.864 14 C -0.470 4.470 15 H 0.104 0.896 16 C -0.147 4.147 17 N -0.396 5.396 18 Si 0.738 3.262 19 H -0.180 1.180 20 H -0.193 1.193 21 H -0.197 1.197 22 C -0.286 4.286 23 C 0.134 3.866 24 F -0.143 7.143 25 C 0.174 3.826 26 F -0.080 7.080 27 H 0.116 0.884 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.162 0.838 32 H 0.115 0.885 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -14.268 0.538 0.224 14.280 hybrid contribution 0.903 -0.193 -0.019 0.923 sum -13.365 0.345 0.205 13.372 Atomic orbital electron populations 1.22200 0.93410 1.04886 1.04740 1.22236 0.91702 0.87158 0.71828 1.90624 1.71971 1.33953 1.35795 1.20555 0.92220 0.96633 1.14054 1.21044 1.00033 0.89593 0.94244 1.21020 0.91946 0.99926 1.07472 1.18022 0.89470 0.81072 0.96685 1.91555 1.81174 1.44147 1.92620 1.18809 0.95225 0.89855 1.03819 1.17463 0.87760 1.27344 0.93018 1.20192 0.94463 0.97827 0.94053 1.20998 0.92176 1.07246 0.98932 1.17465 0.93334 0.85566 0.90016 1.19726 0.91372 1.33715 1.02145 0.89565 1.26064 1.01736 0.92366 0.94485 1.69825 1.39048 1.20274 1.10439 0.86140 0.80825 0.79513 0.79698 1.18041 1.19335 1.19653 1.20588 0.90956 1.18172 0.98909 1.17149 0.89858 1.00678 0.78962 1.91343 1.81094 1.94279 1.47548 1.17945 0.88080 0.81633 0.94954 1.91596 1.79620 1.44761 1.91986 0.88435 0.89370 0.89508 0.83483 0.83771 0.88506 0.85697 0.90239 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.47 9.75 36.01 0.35 -1.12 16 2 C 0.39 5.20 7.22 -30.82 -0.22 4.98 16 3 O -0.45 -7.86 16.07 5.54 0.09 -7.77 16 4 C -0.23 -3.31 5.87 -105.05 -0.62 -3.93 16 5 C -0.03 -0.33 9.35 -39.04 -0.37 -0.69 16 6 C -0.18 -2.24 9.99 -39.64 -0.40 -2.63 16 7 C 0.17 2.83 7.29 -38.84 -0.28 2.55 16 8 F -0.12 -2.17 16.81 2.25 0.04 -2.13 16 9 C -0.08 -1.48 4.92 -104.81 -0.52 -1.99 16 10 C -0.25 -5.85 4.61 -104.57 -0.48 -6.33 16 11 C -0.05 -1.09 9.71 -39.66 -0.38 -1.47 16 12 C -0.17 -4.38 8.63 -39.27 -0.34 -4.71 16 13 C 0.14 3.61 5.57 -106.81 -0.60 3.02 16 14 C -0.44 -11.12 9.03 -37.88 -0.34 -11.47 16 15 H 0.09 2.08 7.91 -52.49 -0.42 1.66 16 16 C 0.07 1.75 5.13 -17.33 -0.09 1.66 16 17 N -0.77 -18.67 10.96 55.55 0.61 -18.06 16 18 Si 0.91 17.46 29.60 -169.99 -5.03 12.43 16 19 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 22 C -0.27 -6.65 9.70 -39.23 -0.38 -7.03 16 23 C 0.15 3.71 7.22 -39.50 -0.29 3.42 16 24 F -0.16 -3.82 16.80 2.25 0.04 -3.78 16 25 C 0.19 3.61 7.27 -38.43 -0.28 3.33 16 26 F -0.10 -2.17 15.10 2.25 0.03 -2.13 16 27 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.43 6.45 -51.93 -0.34 0.10 16 30 H 0.15 0.87 6.33 -52.49 -0.33 0.54 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 33 H 0.13 3.16 6.16 -52.48 -0.32 2.84 16 34 H 0.29 6.20 8.30 -40.82 -0.34 5.86 16 35 H 0.11 2.56 8.06 -52.49 -0.42 2.14 16 LS Contribution 323.53 15.07 4.88 4.88 Total: -1.00 -29.63 323.53 -7.23 -36.85 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -2.65 Total: 2.14 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -5.23 Total: -22.43 kcal Atomic # 7 Polarization: -18.67 SS G_CDS: 0.61 Total: -18.06 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: 0.09 Total: -7.77 kcal Atomic # 9 Polarization: -8.15 SS G_CDS: 0.11 Total: -8.04 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.63 -7.23 -36.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244619023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.424 kcal (2) G-P(sol) polarization free energy of solvation -29.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds