Wall clock time and date at job start Tue Mar 31 2020 12:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21295 * 120.00354 * 2 1 4 4 C 1.46857 * 119.99393 * 179.97438 * 2 1 3 5 5 C 1.40136 * 120.10185 * 0.02562 * 4 2 1 6 6 C 1.37773 * 120.18842 * 179.97438 * 5 4 2 7 7 C 1.38538 * 120.39009 * 359.71828 * 6 5 4 8 8 F 1.35091 * 119.90678 * 180.30017 * 7 6 5 9 9 C 1.39928 * 120.18695 * 0.56501 * 7 6 5 10 10 C 1.47879 * 120.09140 * 179.71915 * 9 7 6 11 11 C 1.39976 * 119.89300 * 269.71901 * 10 9 7 12 12 C 1.36209 * 120.13558 * 179.97438 * 11 10 9 13 13 C 1.40978 * 119.93140 * 359.97438 * 12 11 10 14 14 C 1.41014 * 120.10432 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99951 * 204.71563 * 14 13 12 16 16 C 1.39977 * 119.99417 * 24.71236 * 14 13 12 17 17 N 1.30819 * 120.00148 * 17.99100 * 16 14 13 18 18 Si 1.86799 * 119.99625 * 197.98646 * 16 14 13 19 19 H 1.48496 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47138 * 120.00328 * 18 16 14 21 21 H 1.48506 * 109.47022 * 240.00407 * 18 16 14 22 22 C 1.40882 * 119.80018 * 0.02562 * 13 12 11 23 23 C 1.36451 * 119.85844 * 359.72993 * 22 13 12 24 24 F 1.35098 * 119.96509 * 180.25237 * 23 22 13 25 25 C 1.39601 * 119.81048 * 359.43741 * 9 7 6 26 26 F 1.35093 * 120.19154 * 180.30575 * 25 9 7 27 27 H 1.09000 * 109.47108 * 270.00648 * 1 2 3 28 28 H 1.09003 * 109.46664 * 29.99965 * 1 2 3 29 29 H 1.08990 * 109.47359 * 149.99764 * 1 2 3 30 30 H 1.08000 * 119.90456 * 0.02562 * 5 4 2 31 31 H 1.07999 * 119.80517 * 180.02562 * 6 5 4 32 32 H 1.07998 * 119.92991 * 359.97438 * 11 10 9 33 33 H 1.08005 * 120.03490 * 179.97438 * 12 11 10 34 34 H 0.97000 * 119.99556 * 179.97438 * 17 16 14 35 35 H 1.08001 * 120.07171 * 180.02562 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 1.5425 -2.4867 0.0006 6 6 2.2295 -3.6809 0.0006 7 6 3.6148 -3.6926 -0.0053 8 9 4.2784 -4.8693 -0.0114 9 6 4.3286 -2.4891 0.0006 10 6 5.8073 -2.5041 0.0006 11 6 6.5049 -2.5111 1.2141 12 6 7.8669 -2.5255 1.2199 13 6 8.5754 -2.5337 0.0011 14 6 9.9855 -2.5480 0.0028 15 1 10.5304 -2.1632 -0.8465 16 6 10.6788 -3.0609 1.1054 17 7 10.0637 -3.8338 1.9630 18 14 12.4823 -2.6416 1.3520 19 1 12.9398 -1.7563 0.2510 20 1 12.6552 -1.9443 2.6516 21 1 13.2856 -3.8907 1.3497 22 6 7.8705 -2.5266 -1.2186 23 6 6.5060 -2.5173 -1.2146 24 9 5.8278 -2.5156 -2.3830 25 6 3.6408 -1.2743 0.0006 26 9 4.3222 -0.1078 0.0001 27 1 -0.3633 0.0001 1.0277 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3633 -0.8899 -0.5138 30 1 0.4625 -2.4867 -0.0003 31 1 1.6848 -4.6135 0.0002 32 1 5.9621 -2.5052 2.1478 33 1 8.4035 -2.5305 2.1572 34 1 10.5443 -4.1895 2.7269 35 1 8.4088 -2.5333 -2.1549 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244619023.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:39 Heat of formation + Delta-G solvation = -149.538748 kcal Electronic energy + Delta-G solvation = -26002.434718 eV Core-core repulsion = 21707.786361 eV Total energy + Delta-G solvation = -4294.648357 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.076 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.08548 -50.06792 -49.73595 -40.79559 -39.68337 -38.78215 -35.85177 -33.69756 -32.23159 -31.32514 -30.77141 -29.91924 -27.28367 -24.89105 -24.07398 -23.14513 -22.60776 -20.85572 -19.71255 -19.27058 -18.40601 -17.91700 -17.53125 -17.19560 -16.97892 -16.87484 -16.55601 -16.42409 -16.37116 -16.23281 -15.79992 -15.76656 -15.35641 -14.99444 -14.44636 -14.25986 -14.08517 -13.76711 -13.58329 -13.24789 -13.09796 -12.97629 -12.89196 -12.81278 -12.74534 -12.46632 -12.21157 -12.00225 -11.56222 -11.15314 -10.84963 -9.94559 -9.89421 -9.69675 -9.37775 -8.84959 -6.57635 -0.67899 -0.07860 0.56159 0.81608 1.20953 1.36509 1.43496 1.53349 2.13783 2.36945 2.46693 2.71703 3.01533 3.27301 3.41869 3.46978 3.60512 3.81564 3.96330 4.10374 4.18031 4.48693 4.70233 4.72341 4.77721 4.79206 4.82238 4.86830 4.91328 4.93170 4.95207 5.09365 5.28014 5.48138 5.48700 5.64893 5.82147 5.86541 6.07244 6.43088 6.49576 6.67993 6.73132 8.12300 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.003640 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.747301 B = 7691.215052 C = 8135.632578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.391 3.609 3 O -0.505 6.505 4 C -0.232 4.232 5 C 0.006 3.994 6 C -0.159 4.159 7 C 0.147 3.853 8 F -0.135 7.135 9 C -0.116 4.116 10 C -0.244 4.244 11 C -0.053 4.053 12 C -0.190 4.190 13 C 0.113 3.887 14 C -0.474 4.474 15 H 0.086 0.914 16 C 0.038 3.962 17 N -0.801 5.801 18 Si 0.992 3.008 19 H -0.257 1.257 20 H -0.260 1.260 21 H -0.261 1.261 22 C -0.286 4.286 23 C 0.135 3.865 24 F -0.161 7.161 25 C 0.156 3.844 26 F -0.133 7.133 27 H 0.124 0.876 28 H 0.091 0.909 29 H 0.125 0.875 30 H 0.216 0.784 31 H 0.192 0.808 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.298 0.702 35 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.184 -0.815 0.596 18.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.272 3.728 3 O -0.383 6.383 4 C -0.234 4.234 5 C -0.011 4.011 6 C -0.178 4.178 7 C 0.127 3.873 8 F -0.113 7.113 9 C -0.118 4.118 10 C -0.246 4.246 11 C -0.072 4.072 12 C -0.209 4.209 13 C 0.110 3.890 14 C -0.502 4.502 15 H 0.104 0.896 16 C -0.181 4.181 17 N -0.425 5.425 18 Si 0.811 3.189 19 H -0.181 1.181 20 H -0.184 1.184 21 H -0.185 1.185 22 C -0.306 4.306 23 C 0.116 3.884 24 F -0.140 7.140 25 C 0.136 3.864 26 F -0.111 7.111 27 H 0.142 0.858 28 H 0.110 0.890 29 H 0.144 0.856 30 H 0.232 0.768 31 H 0.209 0.791 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.109 0.891 35 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.815 -0.427 0.759 17.836 hybrid contribution 1.776 0.060 -0.197 1.788 sum -16.039 -0.368 0.562 16.053 Atomic orbital electron populations 1.22276 0.87816 1.07038 1.06955 1.23182 0.94401 0.85621 0.69571 1.90622 1.73646 1.35620 1.38443 1.21059 0.90360 0.99271 1.12739 1.21811 1.02816 0.86957 0.89496 1.21569 0.89453 1.02596 1.04149 1.18389 0.91402 0.79438 0.98079 1.91512 1.81970 1.44792 1.93007 1.18763 0.93372 0.91846 1.07829 1.17798 0.90472 1.24262 0.92086 1.20457 0.94139 0.97311 0.95276 1.21016 0.92953 1.08459 0.98473 1.17767 0.94241 0.86548 0.90471 1.19975 0.91421 1.35220 1.03535 0.89580 1.26937 1.06279 0.91449 0.93446 1.69844 1.41162 1.20507 1.10951 0.85012 0.74757 0.79478 0.79671 1.18054 1.18403 1.18500 1.20732 0.91602 1.19296 0.98998 1.17377 0.89930 1.01317 0.79791 1.91325 1.80957 1.94323 1.47370 1.18374 0.90094 0.80271 0.97662 1.91510 1.80602 1.46281 1.92742 0.85756 0.89003 0.85644 0.76755 0.79099 0.86707 0.86431 0.89106 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.75 71.24 0.69 -1.03 16 2 C 0.39 9.35 7.22 27.94 0.20 9.55 16 3 O -0.50 -17.77 16.07 -3.08 -0.05 -17.82 16 4 C -0.23 -6.00 5.87 -20.14 -0.12 -6.12 16 5 C 0.01 0.10 9.35 22.62 0.21 0.31 16 6 C -0.16 -3.06 9.99 22.23 0.22 -2.84 16 7 C 0.15 4.77 7.29 22.75 0.17 4.93 16 8 F -0.13 -4.96 16.81 44.97 0.76 -4.20 16 9 C -0.12 -4.66 4.92 -19.99 -0.10 -4.76 16 10 C -0.24 -11.86 4.61 -19.83 -0.09 -11.95 16 11 C -0.05 -2.63 9.71 22.22 0.22 -2.42 16 12 C -0.19 -10.13 8.63 22.47 0.19 -9.93 16 13 C 0.11 6.23 5.57 -21.28 -0.12 6.11 16 14 C -0.47 -25.12 9.03 23.37 0.21 -24.91 16 15 H 0.09 4.38 7.91 -2.91 -0.02 4.36 16 16 C 0.04 1.81 5.13 85.27 0.44 2.25 16 17 N -0.80 -39.86 10.96 21.83 0.24 -39.62 16 18 Si 0.99 36.20 29.60 68.60 2.03 38.23 16 19 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 20 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 21 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 22 C -0.29 -15.32 9.70 22.50 0.22 -15.10 16 23 C 0.13 6.96 7.22 22.33 0.16 7.12 16 24 F -0.16 -7.87 16.80 44.97 0.76 -7.11 16 25 C 0.16 5.88 7.27 23.02 0.17 6.05 16 26 F -0.13 -6.04 15.10 44.97 0.68 -5.36 16 27 H 0.12 0.63 8.14 -2.39 -0.02 0.62 16 28 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.13 0.21 6.45 -2.39 -0.02 0.19 16 30 H 0.22 0.40 6.33 -2.91 -0.02 0.38 16 31 H 0.19 1.99 8.06 -2.91 -0.02 1.96 16 32 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 33 H 0.12 6.32 6.16 -2.91 -0.02 6.30 16 34 H 0.30 13.08 8.30 -92.71 -0.77 12.31 16 35 H 0.11 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -74.47 323.53 8.25 -66.21 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.17 Total: 12.40 kcal Atomic # 6 Polarization: -45.41 SS G_CDS: 2.67 Total: -42.74 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.24 Total: -39.62 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.05 Total: -17.82 kcal Atomic # 9 Polarization: -18.86 SS G_CDS: 2.19 Total: -16.67 kcal Atomic # 14 Polarization: 36.20 SS G_CDS: 2.03 Total: 38.23 kcal Total: -74.47 8.25 -66.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244619023.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.325 kcal (2) G-P(sol) polarization free energy of solvation -74.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds