Wall clock time and date at job start Tue Mar 31 2020 12:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35946 * 116.99892 * 2 1 4 4 C 1.38811 * 120.05840 * 275.11742 * 3 2 1 5 5 F 1.35102 * 119.94196 * 0.02562 * 4 3 2 6 6 C 1.38236 * 120.11614 * 180.02562 * 4 3 2 7 7 C 1.39088 * 120.22306 * 0.03050 * 6 4 3 8 8 S 1.76198 * 119.94657 * 179.97438 * 7 6 4 9 9 C 1.81400 * 103.00051 * 359.97438 * 8 7 6 10 10 C 1.38601 * 120.10884 * 359.68917 * 7 6 4 11 11 C 1.39414 * 119.88353 * 0.55955 * 10 7 6 12 12 C 1.48175 * 120.11138 * 179.74039 * 11 10 7 13 13 C 1.40108 * 119.99646 * 227.95989 * 12 11 10 14 14 N 1.32150 * 120.29003 * 179.97438 * 13 12 11 15 15 C 1.31900 * 120.29506 * 359.70495 * 14 13 12 16 16 C 1.40817 * 119.97559 * 0.57200 * 15 14 13 17 17 C 1.41307 * 120.14591 * 179.70289 * 16 15 14 18 18 H 1.08011 * 119.99913 * 7.50108 * 17 16 15 19 19 C 1.40039 * 120.00384 * 187.50676 * 17 16 15 20 20 N 1.30730 * 120.00118 * 182.72112 * 19 17 16 21 21 Si 1.86797 * 119.99903 * 2.72008 * 19 17 16 22 22 H 1.48501 * 109.47330 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47259 * 300.00068 * 21 19 17 24 24 H 1.48500 * 109.47421 * 60.00092 * 21 19 17 25 25 N 1.32561 * 119.99070 * 47.94124 * 12 11 10 26 26 H 1.08998 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46873 * 300.00095 * 1 2 3 28 28 H 1.08996 * 109.46825 * 60.00231 * 1 2 3 29 29 H 1.07997 * 119.88563 * 179.97438 * 6 4 3 30 30 H 1.08995 * 109.47168 * 59.99902 * 9 8 7 31 31 H 1.08996 * 109.47320 * 180.02562 * 9 8 7 32 32 H 1.09005 * 109.46895 * 300.00346 * 9 8 7 33 33 H 1.07997 * 120.06037 * 180.30432 * 10 7 6 34 34 H 1.08001 * 119.85164 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.01578 * 180.27543 * 15 14 13 36 36 H 0.97004 * 120.00521 * 354.89897 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.2664 1.8794 -1.1966 5 9 1.8663 1.3252 -2.3620 6 6 2.8943 3.1110 -1.1981 7 6 3.3092 3.6867 -0.0019 8 16 4.1095 5.2564 -0.0122 9 6 4.1495 5.6824 -1.7750 10 6 3.0889 3.0304 1.1989 11 6 2.4607 1.7858 1.2051 12 6 2.2278 1.0771 2.4854 13 6 2.5699 -0.2760 2.6093 14 7 2.3651 -0.9136 3.7486 15 6 1.8424 -0.2804 4.7808 16 6 1.4888 1.0780 4.6676 17 6 0.9228 1.7581 5.7692 18 1 0.8716 1.2750 6.7339 19 6 0.4280 3.0585 5.6103 20 7 -0.0471 3.7077 6.6408 21 14 0.4467 3.8656 3.9258 22 1 -0.1270 5.2317 4.0249 23 1 1.8452 3.9512 3.4334 24 1 -0.3624 3.0559 2.9798 25 7 1.6962 1.7234 3.5134 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.0641 3.6273 -2.1313 30 1 3.1312 5.7288 -2.1608 31 1 4.6317 6.6514 -1.9038 32 1 4.7101 4.9227 -2.3198 33 1 3.4070 3.4804 2.1277 34 1 3.0035 -0.7999 1.7703 35 1 1.6812 -0.8047 5.7111 36 1 -0.1255 3.2637 7.4997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245223373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:54 Heat of formation + Delta-G solvation = -28.676086 kcal Electronic energy + Delta-G solvation = -24410.705969 eV Core-core repulsion = 20707.431748 eV Total energy + Delta-G solvation = -3703.274221 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.92905 -40.11847 -38.91755 -37.25332 -34.32828 -33.22550 -31.88284 -30.19360 -29.91489 -28.75270 -26.81986 -26.03291 -24.17587 -22.77157 -22.05094 -21.14653 -18.69454 -18.15218 -17.64775 -16.95743 -16.21471 -15.97749 -15.80724 -15.75771 -15.16540 -14.93072 -14.78498 -14.33699 -13.99232 -13.79509 -13.55106 -13.32184 -13.15226 -12.89699 -12.55920 -12.45179 -12.30404 -11.96729 -11.61575 -11.39609 -11.22958 -11.05575 -10.47254 -10.08182 -9.98651 -9.83504 -9.53776 -9.39935 -9.20159 -8.95354 -8.10069 -7.76726 -7.46778 -7.31229 -5.03628 0.76068 1.00799 1.32841 2.13105 2.21053 2.46649 3.23174 3.46452 3.51519 3.83843 3.85076 4.10415 4.23780 4.46652 4.53393 4.81786 4.82185 4.90367 5.06974 5.22788 5.33550 5.36024 5.40519 5.48791 5.60220 5.65308 5.70098 5.79505 5.91720 6.04795 6.13269 6.31240 6.52726 6.58063 6.71994 7.18762 7.22620 7.48156 7.76194 7.92542 8.30802 8.69659 9.17746 9.77046 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.005947 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.564694 B = 4706.881590 C = 6152.540492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.075 3.925 4 C 0.096 3.904 5 F -0.131 7.131 6 C -0.160 4.160 7 C -0.070 4.070 8 S -0.094 6.094 9 C -0.151 4.151 10 C -0.066 4.066 11 C 0.010 3.990 12 C 0.158 3.842 13 C -0.073 4.073 14 N -0.421 5.421 15 C -0.033 4.033 16 C 0.199 3.801 17 C -0.452 4.452 18 H 0.090 0.910 19 C 0.044 3.956 20 N -0.790 5.790 21 Si 1.140 2.860 22 H -0.325 1.325 23 H -0.269 1.269 24 H -0.293 1.293 25 N -0.531 5.531 26 H 0.097 0.903 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.140 0.860 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.141 0.859 35 H 0.141 0.859 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 2.628 -14.722 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.233 6.233 3 C 0.027 3.973 4 C 0.074 3.926 5 F -0.110 7.110 6 C -0.185 4.185 7 C -0.183 4.183 8 S 0.148 5.852 9 C -0.319 4.319 10 C -0.090 4.090 11 C 0.005 3.995 12 C 0.015 3.985 13 C -0.229 4.229 14 N -0.132 5.132 15 C -0.205 4.205 16 C 0.074 3.926 17 C -0.484 4.484 18 H 0.108 0.892 19 C -0.180 4.180 20 N -0.411 5.411 21 Si 0.974 3.026 22 H -0.257 1.257 23 H -0.196 1.196 24 H -0.221 1.221 25 N -0.254 5.254 26 H 0.115 0.885 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.157 0.843 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.104 0.896 33 H 0.167 0.833 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.165 4.557 -14.558 15.813 hybrid contribution -0.483 -2.257 -0.208 2.317 sum 3.682 2.300 -14.766 15.391 Atomic orbital electron populations 1.23033 0.78578 1.03500 1.00740 1.86096 1.20125 1.23075 1.93985 1.18555 1.00447 0.88076 0.90234 1.17635 1.01150 0.92763 0.81018 1.91486 1.88722 1.85115 1.45679 1.20953 1.03792 0.95499 0.98291 1.21398 1.02792 0.98886 0.95215 1.85711 1.72551 1.17136 1.09785 1.23729 1.06088 1.06004 0.96125 1.21026 0.97851 0.92865 0.97248 1.18659 0.97081 0.92635 0.91084 1.19961 0.95719 0.92048 0.90761 1.22540 1.11861 0.91688 0.96843 1.67777 1.07890 1.37992 0.99501 1.23242 1.06124 0.93398 0.97761 1.19408 0.91232 0.91213 0.90707 1.20794 1.31162 1.00577 0.95906 0.89206 1.27798 0.89430 0.94323 1.06420 1.70630 1.29377 1.38711 1.02343 0.82107 0.78367 0.71929 0.70181 1.25744 1.19647 1.22134 1.67540 1.21710 1.35336 1.00791 0.88493 0.93084 0.93692 0.84280 0.89598 0.87229 0.89641 0.83309 0.84153 0.84132 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 11.13 101.05 1.12 1.66 16 2 O -0.32 -5.52 8.45 -19.57 -0.17 -5.69 16 3 C 0.08 1.31 5.62 -38.79 -0.22 1.10 16 4 C 0.10 1.46 7.30 -39.37 -0.29 1.18 16 5 F -0.13 -1.93 17.10 2.25 0.04 -1.89 16 6 C -0.16 -2.15 9.33 -39.27 -0.37 -2.52 16 7 C -0.07 -1.03 6.10 -39.13 -0.24 -1.27 16 8 S -0.09 -1.16 22.56 -107.50 -2.42 -3.58 16 9 C -0.15 -1.16 9.14 101.05 0.92 -0.23 16 10 C -0.07 -1.17 9.01 -39.01 -0.35 -1.52 16 11 C 0.01 0.18 5.63 -104.80 -0.59 -0.41 16 12 C 0.16 3.50 6.13 -82.77 -0.51 2.99 16 13 C -0.07 -1.60 9.94 -16.71 -0.17 -1.76 16 14 N -0.42 -9.70 10.47 -12.04 -0.13 -9.83 16 15 C -0.03 -0.78 10.97 -16.55 -0.18 -0.96 16 16 C 0.20 4.97 6.37 -84.84 -0.54 4.43 16 17 C -0.45 -11.52 9.59 -37.74 -0.36 -11.88 16 18 H 0.09 2.24 8.05 -52.48 -0.42 1.82 16 19 C 0.04 1.12 5.52 -17.35 -0.10 1.03 16 20 N -0.79 -20.40 13.65 55.55 0.76 -19.64 16 21 Si 1.14 27.12 25.59 -169.99 -4.35 22.77 16 22 H -0.32 -7.70 7.11 56.52 0.40 -7.29 16 23 H -0.27 -6.18 5.17 56.52 0.29 -5.88 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 N -0.53 -12.92 4.61 -7.52 -0.03 -12.95 16 26 H 0.10 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.14 1.44 5.85 -52.49 -0.31 1.13 16 30 H 0.09 0.61 7.74 -51.93 -0.40 0.20 16 31 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.58 7.74 -51.92 -0.40 0.18 16 33 H 0.15 2.78 7.06 -52.49 -0.37 2.41 16 34 H 0.14 2.86 7.52 -52.49 -0.39 2.46 16 35 H 0.14 2.97 8.06 -52.49 -0.42 2.55 16 36 H 0.29 7.01 8.72 -40.82 -0.36 6.66 16 LS Contribution 326.93 15.07 4.93 4.93 Total: -1.00 -27.99 326.93 -6.91 -34.90 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -3.67 Total: -0.85 kcal Atomic # 6 Polarization: -6.32 SS G_CDS: -1.86 Total: -8.17 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: 0.60 Total: -42.42 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.17 Total: -5.69 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 27.12 SS G_CDS: -4.35 Total: 22.77 kcal Atomic # 16 Polarization: -1.16 SS G_CDS: -2.42 Total: -3.58 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.99 -6.91 -34.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245223373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.226 kcal (2) G-P(sol) polarization free energy of solvation -27.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds