Wall clock time and date at job start Tue Mar 31 2020 12:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35946 * 116.99892 * 2 1 4 4 C 1.38811 * 120.05840 * 275.11742 * 3 2 1 5 5 F 1.35102 * 119.94196 * 0.02562 * 4 3 2 6 6 C 1.38236 * 120.11614 * 180.02562 * 4 3 2 7 7 C 1.39088 * 120.22306 * 0.03050 * 6 4 3 8 8 S 1.76198 * 119.94657 * 179.97438 * 7 6 4 9 9 C 1.81400 * 103.00051 * 359.97438 * 8 7 6 10 10 C 1.38601 * 120.10884 * 359.68917 * 7 6 4 11 11 C 1.39414 * 119.88353 * 0.55955 * 10 7 6 12 12 C 1.48175 * 120.11138 * 179.74039 * 11 10 7 13 13 C 1.40108 * 119.99646 * 227.95989 * 12 11 10 14 14 N 1.32150 * 120.29003 * 179.97438 * 13 12 11 15 15 C 1.31900 * 120.29506 * 359.70495 * 14 13 12 16 16 C 1.40817 * 119.97559 * 0.57200 * 15 14 13 17 17 C 1.41307 * 120.14591 * 179.70289 * 16 15 14 18 18 H 1.08011 * 119.99913 * 7.50108 * 17 16 15 19 19 C 1.40039 * 120.00384 * 187.50676 * 17 16 15 20 20 N 1.30730 * 120.00118 * 182.72112 * 19 17 16 21 21 Si 1.86797 * 119.99903 * 2.72008 * 19 17 16 22 22 H 1.48501 * 109.47330 * 180.02562 * 21 19 17 23 23 H 1.48504 * 109.47259 * 300.00068 * 21 19 17 24 24 H 1.48500 * 109.47421 * 60.00092 * 21 19 17 25 25 N 1.32561 * 119.99070 * 47.94124 * 12 11 10 26 26 H 1.08998 * 109.46921 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46873 * 300.00095 * 1 2 3 28 28 H 1.08996 * 109.46825 * 60.00231 * 1 2 3 29 29 H 1.07997 * 119.88563 * 179.97438 * 6 4 3 30 30 H 1.08995 * 109.47168 * 59.99902 * 9 8 7 31 31 H 1.08996 * 109.47320 * 180.02562 * 9 8 7 32 32 H 1.09005 * 109.46895 * 300.00346 * 9 8 7 33 33 H 1.07997 * 120.06037 * 180.30432 * 10 7 6 34 34 H 1.08001 * 119.85164 * 0.02562 * 13 12 11 35 35 H 1.08002 * 120.01578 * 180.27543 * 15 14 13 36 36 H 0.97004 * 120.00521 * 354.89897 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 2.2664 1.8794 -1.1966 5 9 1.8663 1.3252 -2.3620 6 6 2.8943 3.1110 -1.1981 7 6 3.3092 3.6867 -0.0019 8 16 4.1095 5.2564 -0.0122 9 6 4.1495 5.6824 -1.7750 10 6 3.0889 3.0304 1.1989 11 6 2.4607 1.7858 1.2051 12 6 2.2278 1.0771 2.4854 13 6 2.5699 -0.2760 2.6093 14 7 2.3651 -0.9136 3.7486 15 6 1.8424 -0.2804 4.7808 16 6 1.4888 1.0780 4.6676 17 6 0.9228 1.7581 5.7692 18 1 0.8716 1.2750 6.7339 19 6 0.4280 3.0585 5.6103 20 7 -0.0471 3.7077 6.6408 21 14 0.4467 3.8656 3.9258 22 1 -0.1270 5.2317 4.0249 23 1 1.8452 3.9512 3.4334 24 1 -0.3624 3.0559 2.9798 25 7 1.6962 1.7234 3.5134 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.0641 3.6273 -2.1313 30 1 3.1312 5.7288 -2.1608 31 1 4.6317 6.6514 -1.9038 32 1 4.7101 4.9227 -2.3198 33 1 3.4070 3.4804 2.1277 34 1 3.0035 -0.7999 1.7703 35 1 1.6812 -0.8047 5.7111 36 1 -0.1255 3.2637 7.4997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245223373.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:53 Heat of formation + Delta-G solvation = -44.245100 kcal Electronic energy + Delta-G solvation = -24411.381093 eV Core-core repulsion = 20707.431748 eV Total energy + Delta-G solvation = -3703.949344 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.09811 -41.68521 -40.46636 -38.50376 -36.24191 -34.92427 -33.57449 -31.42808 -31.23377 -29.64696 -28.04848 -27.86193 -25.73597 -24.23945 -23.56651 -22.72095 -20.61325 -19.44937 -18.86996 -18.32128 -17.81803 -17.56609 -17.19851 -17.01631 -16.49180 -16.26481 -15.92733 -15.70083 -15.47414 -15.25917 -14.91106 -14.63976 -14.42635 -14.40495 -13.98517 -13.59902 -13.47701 -13.30258 -13.14345 -13.02951 -12.92507 -12.62094 -11.90257 -11.78212 -11.44745 -11.34714 -11.17201 -11.10997 -10.77462 -10.29479 -9.89848 -9.58586 -9.20446 -8.48300 -6.98336 -0.55228 -0.26504 0.35215 0.43093 0.61380 1.38619 1.51999 1.60209 1.92078 1.98794 2.32778 2.48749 2.63521 2.80802 3.20614 3.40848 3.73616 3.80434 3.82543 4.00596 4.04605 4.24663 4.26898 4.28457 4.31257 4.33081 4.43009 4.59529 4.62970 4.75625 4.77618 4.86670 4.93609 4.99909 5.26082 5.31097 5.37618 5.82619 6.03582 6.21978 6.38313 6.84232 7.32519 7.82214 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.011829 B = 0.005947 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2366.564694 B = 4706.881590 C = 6152.540492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.331 6.331 3 C 0.066 3.934 4 C 0.100 3.900 5 F -0.125 7.125 6 C -0.138 4.138 7 C -0.065 4.065 8 S -0.121 6.121 9 C -0.142 4.142 10 C -0.080 4.080 11 C -0.020 4.020 12 C 0.158 3.842 13 C -0.064 4.064 14 N -0.426 5.426 15 C -0.044 4.044 16 C 0.190 3.810 17 C -0.477 4.477 18 H 0.086 0.914 19 C 0.024 3.976 20 N -0.810 5.810 21 Si 1.164 2.836 22 H -0.324 1.324 23 H -0.262 1.262 24 H -0.303 1.303 25 N -0.544 5.544 26 H 0.119 0.881 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.180 0.820 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.159 0.841 35 H 0.158 0.842 36 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.859 3.289 -18.246 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.247 6.247 3 C 0.018 3.982 4 C 0.078 3.922 5 F -0.103 7.103 6 C -0.163 4.163 7 C -0.178 4.178 8 S 0.122 5.878 9 C -0.310 4.310 10 C -0.104 4.104 11 C -0.024 4.024 12 C 0.015 3.985 13 C -0.222 4.222 14 N -0.137 5.137 15 C -0.214 4.214 16 C 0.064 3.936 17 C -0.510 4.510 18 H 0.104 0.896 19 C -0.197 4.197 20 N -0.433 5.433 21 Si 0.996 3.004 22 H -0.257 1.257 23 H -0.189 1.189 24 H -0.231 1.231 25 N -0.267 5.267 26 H 0.137 0.863 27 H 0.043 0.957 28 H 0.083 0.917 29 H 0.197 0.803 30 H 0.118 0.882 31 H 0.151 0.849 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.176 0.824 35 H 0.175 0.825 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.065 5.218 -18.064 19.473 hybrid contribution -0.648 -2.482 0.639 2.643 sum 4.417 2.736 -17.426 18.184 Atomic orbital electron populations 1.23174 0.77517 1.04929 1.00388 1.86059 1.21222 1.23396 1.94056 1.18617 1.00821 0.88275 0.90489 1.17605 1.01041 0.93070 0.80442 1.91508 1.88643 1.85140 1.45025 1.21327 1.01232 0.94413 0.99278 1.21535 1.01972 0.99783 0.94488 1.85924 1.71586 1.15333 1.14928 1.23929 1.07604 1.07577 0.91876 1.20909 0.98804 0.92728 0.97955 1.18570 0.99773 0.93799 0.90282 1.20404 0.94240 0.92396 0.91437 1.22916 1.10434 0.91963 0.96849 1.67830 1.07980 1.38142 0.99779 1.23443 1.06329 0.93022 0.98604 1.19578 0.91175 0.91937 0.90950 1.20789 1.32970 1.01031 0.96186 0.89640 1.28263 0.89242 0.94751 1.07396 1.70629 1.30939 1.39026 1.02663 0.81795 0.78500 0.71342 0.68735 1.25687 1.18900 1.23143 1.67511 1.21980 1.36051 1.01200 0.86283 0.95660 0.91741 0.80321 0.88210 0.84938 0.87983 0.85198 0.82388 0.82510 0.89970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.13 113.37 1.26 2.23 16 2 O -0.33 -11.07 8.45 -92.94 -0.79 -11.86 16 3 C 0.07 2.22 5.62 22.78 0.13 2.35 16 4 C 0.10 2.75 7.30 22.41 0.16 2.92 16 5 F -0.12 -3.22 17.10 44.97 0.77 -2.45 16 6 C -0.14 -3.16 9.33 22.47 0.21 -2.95 16 7 C -0.06 -1.76 6.10 22.56 0.14 -1.62 16 8 S -0.12 -2.63 22.56 -56.49 -1.27 -3.91 16 9 C -0.14 -1.47 9.14 113.37 1.04 -0.44 16 10 C -0.08 -2.77 9.01 22.64 0.20 -2.57 16 11 C -0.02 -0.77 5.63 -19.98 -0.11 -0.88 16 12 C 0.16 7.01 6.13 42.13 0.26 7.27 16 13 C -0.06 -2.80 9.94 85.10 0.85 -1.95 16 14 N -0.43 -19.52 10.47 -192.00 -2.01 -21.53 16 15 C -0.04 -2.09 10.97 85.31 0.94 -1.15 16 16 C 0.19 9.64 6.37 40.22 0.26 9.89 16 17 C -0.48 -25.05 9.59 23.46 0.23 -24.83 16 18 H 0.09 4.43 8.05 -2.90 -0.02 4.40 16 19 C 0.02 1.25 5.52 85.29 0.47 1.72 16 20 N -0.81 -42.86 13.65 21.84 0.30 -42.56 16 21 Si 1.16 55.99 25.59 68.60 1.76 57.75 16 22 H -0.32 -15.33 7.11 99.48 0.71 -14.62 16 23 H -0.26 -12.20 5.17 99.48 0.51 -11.68 16 24 H -0.30 -14.87 7.11 99.48 0.71 -14.17 16 25 N -0.54 -26.88 4.61 -177.69 -0.82 -27.70 16 26 H 0.12 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.18 2.64 5.85 -2.91 -0.02 2.63 16 30 H 0.10 0.85 7.74 -2.39 -0.02 0.83 16 31 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.10 0.81 7.74 -2.39 -0.02 0.79 16 33 H 0.13 4.95 7.06 -2.91 -0.02 4.93 16 34 H 0.16 6.26 7.52 -2.91 -0.02 6.24 16 35 H 0.16 6.69 8.06 -2.91 -0.02 6.67 16 36 H 0.29 14.55 8.72 -92.71 -0.81 13.74 16 Total: -1.00 -61.41 326.93 4.85 -56.55 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 0.90 Total: 5.71 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: 6.02 Total: -10.02 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -2.53 Total: -91.78 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.79 Total: -11.86 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.77 Total: -2.45 kcal Atomic # 14 Polarization: 55.99 SS G_CDS: 1.76 Total: 57.75 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -1.27 Total: -3.91 kcal Total: -61.41 4.85 -56.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245223373.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.306 kcal (2) G-P(sol) polarization free energy of solvation -61.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds