Wall clock time and date at job start Tue Mar 31 2020 12:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35860 * 116.99608 * 2 1 4 4 C 1.38817 * 120.08252 * 270.25036 * 3 2 1 5 5 F 1.35102 * 119.93199 * 0.04851 * 4 3 2 6 6 C 1.38218 * 120.13778 * 180.30031 * 4 3 2 7 7 C 1.39254 * 120.29510 * 359.72641 * 6 4 3 8 8 S 1.76194 * 119.92514 * 179.97438 * 7 6 4 9 9 C 1.81393 * 103.00330 * 0.02562 * 8 7 6 10 10 C 1.38454 * 120.14886 * 359.97438 * 7 6 4 11 11 C 1.39727 * 119.86688 * 359.97438 * 10 7 6 12 12 C 1.47590 * 120.15034 * 180.02562 * 11 10 7 13 13 N 1.33049 * 120.54853 * 232.08225 * 12 11 10 14 14 C 1.31898 * 120.03037 * 179.97438 * 13 12 11 15 15 C 1.39033 * 121.22314 * 359.97438 * 14 13 12 16 16 N 1.31515 * 121.14515 * 359.97438 * 15 14 13 17 17 C 1.34090 * 119.85993 * 0.02562 * 16 15 14 18 18 C 1.40717 * 120.58138 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00450 * 175.45785 * 18 17 16 20 20 C 1.40148 * 120.00000 * 355.45398 * 18 17 16 21 21 N 1.30699 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00025 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47370 * 60.00008 * 22 20 18 24 24 H 1.48493 * 109.47272 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.46905 * 299.99997 * 22 20 18 26 26 H 1.08999 * 109.46890 * 60.00148 * 1 2 3 27 27 H 1.09003 * 109.46702 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47007 * 299.99854 * 1 2 3 29 29 H 1.08000 * 119.85529 * 179.74051 * 6 4 3 30 30 H 1.09005 * 109.47297 * 59.99688 * 9 8 7 31 31 H 1.08991 * 109.47581 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.47262 * 300.00302 * 9 8 7 33 33 H 1.08002 * 120.06760 * 180.02562 * 10 7 6 34 34 H 1.07998 * 119.38855 * 179.97438 * 14 13 12 35 35 H 1.08004 * 119.42559 * 180.28211 * 15 14 13 36 36 H 0.96995 * 119.99737 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 2.3569 1.8329 -1.2012 5 9 2.0450 1.2341 -2.3714 6 6 2.9899 3.0617 -1.2025 7 6 3.3145 3.6860 -0.0009 8 16 4.1220 5.2520 -0.0140 9 6 4.2992 5.6050 -1.7844 10 6 3.0042 3.0789 1.2042 11 6 2.3634 1.8373 1.2131 12 6 2.0292 1.1848 2.4941 13 7 2.3984 -0.0715 2.7297 14 6 2.0948 -0.6445 3.8782 15 6 1.3899 0.0408 4.8614 16 7 1.0026 1.2844 4.6788 17 6 1.2875 1.9102 3.5277 18 6 0.8800 3.2403 3.3160 19 1 1.1770 3.7596 2.4168 20 6 0.0887 3.8913 4.2721 21 7 -0.2704 3.2631 5.3605 22 14 -0.4528 5.6569 3.9909 23 1 -1.2577 5.7354 2.7455 24 1 -1.2743 6.1119 5.1412 25 1 0.7437 6.5272 3.8627 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.2336 3.5398 -2.1397 30 1 3.3135 5.6379 -2.2488 31 1 4.7944 6.5670 -1.9153 32 1 4.8955 4.8222 -2.2531 33 1 3.2562 3.5645 2.1354 34 1 2.3993 -1.6648 4.0583 35 1 1.1607 -0.4550 5.7931 36 1 -0.8178 3.7138 6.0224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245225413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:58 Heat of formation + Delta-G solvation = -14.208797 kcal Electronic energy + Delta-G solvation = -24502.364264 eV Core-core repulsion = 20799.717392 eV Total energy + Delta-G solvation = -3702.646872 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.59604 -39.53319 -38.31278 -36.82903 -34.28018 -32.57874 -31.48664 -29.87456 -29.45966 -28.44507 -26.56560 -26.17685 -23.61233 -22.37465 -21.81970 -21.06937 -17.84887 -17.81614 -17.27206 -16.68150 -16.04209 -15.65195 -15.53983 -15.01941 -14.85200 -14.80784 -14.46351 -14.22565 -14.01392 -13.79702 -13.18902 -12.96470 -12.81968 -12.60503 -12.31846 -12.06306 -11.92718 -11.65300 -11.50981 -11.44936 -11.06767 -10.76509 -10.46298 -10.24128 -10.00271 -9.64338 -9.53941 -9.34935 -9.04720 -8.54786 -7.70333 -7.50372 -7.18480 -6.70833 -4.89105 1.21785 1.41313 1.58189 2.35474 2.44999 2.86849 2.91251 2.94070 3.13350 3.66784 3.69082 4.24967 4.47200 4.56692 4.96149 4.99027 4.99136 5.29662 5.45098 5.51962 5.57105 5.65435 5.69767 5.79183 5.88957 5.98133 6.10053 6.14433 6.17275 6.39996 6.46652 6.65742 6.72847 6.84997 6.87920 7.10330 7.53144 7.83742 7.94073 8.18077 8.46006 9.14305 9.68460 9.87705 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.006606 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.143492 B = 4237.554642 C = 5969.043309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.310 6.310 3 C 0.065 3.935 4 C 0.094 3.906 5 F -0.138 7.138 6 C -0.179 4.179 7 C -0.067 4.067 8 S -0.107 6.107 9 C -0.148 4.148 10 C -0.083 4.083 11 C 0.066 3.934 12 C -0.047 4.047 13 N -0.384 5.384 14 C -0.125 4.125 15 C 0.098 3.902 16 N -0.459 5.459 17 C 0.224 3.776 18 C -0.391 4.391 19 H 0.098 0.902 20 C 0.064 3.936 21 N -0.695 5.695 22 Si 0.909 3.091 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.255 1.255 26 H 0.038 0.962 27 H 0.088 0.912 28 H 0.050 0.950 29 H 0.132 0.868 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.127 0.873 35 H 0.129 0.871 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.366 4.301 -8.683 9.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.226 6.226 3 C 0.017 3.983 4 C 0.073 3.927 5 F -0.117 7.117 6 C -0.204 4.204 7 C -0.179 4.179 8 S 0.135 5.865 9 C -0.317 4.317 10 C -0.107 4.107 11 C 0.062 3.938 12 C -0.195 4.195 13 N -0.095 5.095 14 C -0.286 4.286 15 C -0.073 4.073 16 N -0.175 5.175 17 C 0.099 3.901 18 C -0.421 4.421 19 H 0.116 0.884 20 C -0.165 4.165 21 N -0.314 5.314 22 Si 0.732 3.268 23 H -0.183 1.183 24 H -0.197 1.197 25 H -0.179 1.179 26 H 0.057 0.943 27 H 0.107 0.893 28 H 0.068 0.932 29 H 0.150 0.850 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.102 0.898 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.147 0.853 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.693 4.913 -7.605 9.446 hybrid contribution -0.979 -0.202 -1.265 1.613 sum 1.714 4.712 -8.870 10.189 Atomic orbital electron populations 1.22923 0.79595 1.02670 1.00367 1.86081 1.19247 1.23309 1.93952 1.18764 1.01088 0.88212 0.90205 1.17727 1.02109 0.92244 0.80639 1.91449 1.91199 1.83306 1.45717 1.20794 1.06029 0.95674 0.97867 1.21235 1.03151 0.98241 0.95301 1.85536 1.73102 1.19016 1.08851 1.23674 1.05747 1.05891 0.96381 1.20919 0.98308 0.94812 0.96707 1.18409 0.93042 0.91512 0.90862 1.20806 1.11611 0.92423 0.94674 1.67795 1.14138 1.08369 1.19247 1.22430 1.11496 1.01061 0.93630 1.23452 0.92923 0.92961 0.98013 1.69597 1.20614 1.06993 1.20269 1.20310 0.89338 0.93476 0.86957 1.19810 1.23135 0.95128 1.03984 0.88394 1.26243 0.95144 1.00806 0.94339 1.70046 1.19910 1.36724 1.04713 0.86302 0.80108 0.80963 0.79465 1.18340 1.19747 1.17941 0.94331 0.89313 0.93156 0.84988 0.89786 0.87589 0.89807 0.83874 0.85533 0.85321 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 11.13 101.05 1.12 1.82 16 2 O -0.31 -6.52 9.36 -19.30 -0.18 -6.70 16 3 C 0.07 1.35 5.73 -38.63 -0.22 1.13 16 4 C 0.09 1.72 7.30 -39.37 -0.29 1.43 16 5 F -0.14 -2.43 17.10 2.25 0.04 -2.40 16 6 C -0.18 -2.86 9.33 -39.21 -0.37 -3.22 16 7 C -0.07 -1.12 6.10 -39.12 -0.24 -1.36 16 8 S -0.11 -1.47 22.55 -107.50 -2.42 -3.90 16 9 C -0.15 -1.40 9.14 101.05 0.92 -0.47 16 10 C -0.08 -1.62 7.41 -38.95 -0.29 -1.91 16 11 C 0.07 1.44 5.20 -104.79 -0.55 0.89 16 12 C -0.05 -1.15 6.14 -80.22 -0.49 -1.64 16 13 N -0.38 -9.41 9.97 -7.86 -0.08 -9.48 16 14 C -0.12 -2.83 11.17 -17.23 -0.19 -3.02 16 15 C 0.10 2.24 11.17 -17.39 -0.19 2.05 16 16 N -0.46 -11.87 8.09 -9.56 -0.08 -11.95 16 17 C 0.22 5.75 6.68 -82.64 -0.55 5.19 16 18 C -0.39 -9.51 8.25 -37.93 -0.31 -9.82 16 19 H 0.10 2.24 5.41 -52.49 -0.28 1.95 16 20 C 0.06 1.47 5.50 -17.32 -0.10 1.38 16 21 N -0.70 -16.86 11.51 55.56 0.64 -16.22 16 22 Si 0.91 17.04 29.56 -169.99 -5.03 12.01 16 23 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 24 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 25 H -0.26 -4.71 7.11 56.52 0.40 -4.31 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.13 1.71 5.84 -52.49 -0.31 1.40 16 30 H 0.08 0.74 7.74 -51.92 -0.40 0.34 16 31 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.73 7.74 -51.92 -0.40 0.33 16 33 H 0.14 2.85 7.44 -52.49 -0.39 2.46 16 34 H 0.13 2.49 8.06 -52.49 -0.42 2.07 16 35 H 0.13 2.52 8.06 -52.48 -0.42 2.10 16 36 H 0.28 6.16 8.29 -40.82 -0.34 5.83 16 LS Contribution 330.87 15.07 4.99 4.99 Total: -1.00 -28.66 330.87 -7.32 -35.98 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -3.46 Total: 5.23 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: -1.74 Total: -7.55 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.48 Total: -37.65 kcal Atomic # 8 Polarization: -6.52 SS G_CDS: -0.18 Total: -6.70 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 17.04 SS G_CDS: -5.03 Total: 12.01 kcal Atomic # 16 Polarization: -1.47 SS G_CDS: -2.42 Total: -3.90 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.66 -7.32 -35.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245225413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.768 kcal (2) G-P(sol) polarization free energy of solvation -28.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds