Wall clock time and date at job start Tue Mar 31 2020 12:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35860 * 116.99608 * 2 1 4 4 C 1.38817 * 120.08252 * 270.25036 * 3 2 1 5 5 F 1.35102 * 119.93199 * 0.04851 * 4 3 2 6 6 C 1.38218 * 120.13778 * 180.30031 * 4 3 2 7 7 C 1.39254 * 120.29510 * 359.72641 * 6 4 3 8 8 S 1.76194 * 119.92514 * 179.97438 * 7 6 4 9 9 C 1.81393 * 103.00330 * 0.02562 * 8 7 6 10 10 C 1.38454 * 120.14886 * 359.97438 * 7 6 4 11 11 C 1.39727 * 119.86688 * 359.97438 * 10 7 6 12 12 C 1.47590 * 120.15034 * 180.02562 * 11 10 7 13 13 N 1.33049 * 120.54853 * 232.08225 * 12 11 10 14 14 C 1.31898 * 120.03037 * 179.97438 * 13 12 11 15 15 C 1.39033 * 121.22314 * 359.97438 * 14 13 12 16 16 N 1.31515 * 121.14515 * 359.97438 * 15 14 13 17 17 C 1.34090 * 119.85993 * 0.02562 * 16 15 14 18 18 C 1.40717 * 120.58138 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00450 * 175.45785 * 18 17 16 20 20 C 1.40148 * 120.00000 * 355.45398 * 18 17 16 21 21 N 1.30699 * 119.99869 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00025 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47370 * 60.00008 * 22 20 18 24 24 H 1.48493 * 109.47272 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.46905 * 299.99997 * 22 20 18 26 26 H 1.08999 * 109.46890 * 60.00148 * 1 2 3 27 27 H 1.09003 * 109.46702 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47007 * 299.99854 * 1 2 3 29 29 H 1.08000 * 119.85529 * 179.74051 * 6 4 3 30 30 H 1.09005 * 109.47297 * 59.99688 * 9 8 7 31 31 H 1.08991 * 109.47581 * 179.97438 * 9 8 7 32 32 H 1.08999 * 109.47262 * 300.00302 * 9 8 7 33 33 H 1.08002 * 120.06760 * 180.02562 * 10 7 6 34 34 H 1.07998 * 119.38855 * 179.97438 * 14 13 12 35 35 H 1.08004 * 119.42559 * 180.28211 * 15 14 13 36 36 H 0.96995 * 119.99737 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2106 0.0000 4 6 2.3569 1.8329 -1.2012 5 9 2.0450 1.2341 -2.3714 6 6 2.9899 3.0617 -1.2025 7 6 3.3145 3.6860 -0.0009 8 16 4.1220 5.2520 -0.0140 9 6 4.2992 5.6050 -1.7844 10 6 3.0042 3.0789 1.2042 11 6 2.3634 1.8373 1.2131 12 6 2.0292 1.1848 2.4941 13 7 2.3984 -0.0715 2.7297 14 6 2.0948 -0.6445 3.8782 15 6 1.3899 0.0408 4.8614 16 7 1.0026 1.2844 4.6788 17 6 1.2875 1.9102 3.5277 18 6 0.8800 3.2403 3.3160 19 1 1.1770 3.7596 2.4168 20 6 0.0887 3.8913 4.2721 21 7 -0.2704 3.2631 5.3605 22 14 -0.4528 5.6569 3.9909 23 1 -1.2577 5.7354 2.7455 24 1 -1.2743 6.1119 5.1412 25 1 0.7437 6.5272 3.8627 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.2336 3.5398 -2.1397 30 1 3.3135 5.6379 -2.2488 31 1 4.7944 6.5670 -1.9153 32 1 4.8955 4.8222 -2.2531 33 1 3.2562 3.5645 2.1354 34 1 2.3993 -1.6648 4.0583 35 1 1.1607 -0.4550 5.7931 36 1 -0.8178 3.7138 6.0224 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245225413.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:57 Heat of formation + Delta-G solvation = -30.431227 kcal Electronic energy + Delta-G solvation = -24503.067721 eV Core-core repulsion = 20799.717392 eV Total energy + Delta-G solvation = -3703.350330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.074 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.99832 -41.13676 -39.99584 -38.29943 -36.04935 -34.29652 -33.16333 -31.29628 -30.80705 -29.56336 -28.16336 -27.80122 -25.21957 -24.02114 -23.42407 -22.67353 -19.60810 -19.27941 -18.71297 -18.23287 -17.67031 -17.08068 -16.87421 -16.74911 -16.43241 -16.13605 -15.84211 -15.80532 -15.42525 -14.77572 -14.58178 -14.49917 -14.26338 -13.89902 -13.79410 -13.43411 -13.35103 -13.13980 -13.03282 -12.98564 -12.49118 -12.34158 -12.05072 -11.74588 -11.49874 -11.28318 -11.13147 -10.98817 -10.52503 -10.05822 -9.46862 -9.25850 -8.47194 -8.36035 -6.71461 -0.24766 -0.05667 0.47711 0.62924 1.16414 1.37237 1.45780 1.49958 1.53999 2.13341 2.19981 2.69642 2.80643 3.10765 3.51680 3.74011 3.92510 3.99103 4.11191 4.19565 4.28327 4.33252 4.34602 4.36446 4.41017 4.54765 4.62405 4.64980 4.78240 4.89937 4.97267 5.01665 5.04147 5.19207 5.27329 5.56191 5.76454 6.04306 6.37992 6.45622 6.65357 7.33154 7.87006 8.17739 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.006606 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.143492 B = 4237.554642 C = 5969.043309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.331 6.331 3 C 0.047 3.953 4 C 0.093 3.907 5 F -0.133 7.133 6 C -0.158 4.158 7 C -0.062 4.062 8 S -0.120 6.120 9 C -0.142 4.142 10 C -0.092 4.092 11 C 0.036 3.964 12 C -0.050 4.050 13 N -0.407 5.407 14 C -0.132 4.132 15 C 0.087 3.913 16 N -0.492 5.492 17 C 0.195 3.805 18 C -0.410 4.410 19 H 0.104 0.896 20 C 0.024 3.976 21 N -0.731 5.731 22 Si 0.979 3.021 23 H -0.255 1.255 24 H -0.262 1.262 25 H -0.249 1.249 26 H 0.058 0.942 27 H 0.110 0.890 28 H 0.022 0.978 29 H 0.172 0.828 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.155 0.845 35 H 0.158 0.842 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 6.315 -11.028 13.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.247 6.247 3 C -0.001 4.001 4 C 0.071 3.929 5 F -0.112 7.112 6 C -0.183 4.183 7 C -0.174 4.174 8 S 0.122 5.878 9 C -0.310 4.310 10 C -0.117 4.117 11 C 0.032 3.968 12 C -0.198 4.198 13 N -0.119 5.119 14 C -0.292 4.292 15 C -0.083 4.083 16 N -0.209 5.209 17 C 0.070 3.930 18 C -0.439 4.439 19 H 0.122 0.878 20 C -0.202 4.202 21 N -0.350 5.350 22 Si 0.797 3.203 23 H -0.179 1.179 24 H -0.186 1.186 25 H -0.172 1.172 26 H 0.077 0.923 27 H 0.129 0.871 28 H 0.041 0.959 29 H 0.190 0.810 30 H 0.115 0.885 31 H 0.151 0.849 32 H 0.115 0.885 33 H 0.147 0.853 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.154 6.903 -9.944 12.509 hybrid contribution -1.024 -0.819 -0.644 1.461 sum 2.129 6.084 -10.587 12.395 Atomic orbital electron populations 1.23016 0.78419 1.04013 0.99893 1.86027 1.20572 1.24048 1.94081 1.18920 1.01934 0.88385 0.90849 1.17745 1.02315 0.92834 0.79982 1.91459 1.91197 1.83403 1.45107 1.21169 1.03637 0.94369 0.99109 1.21443 1.02019 0.99544 0.94420 1.85684 1.71912 1.16454 1.13751 1.23883 1.07152 1.07681 0.92256 1.20821 0.99005 0.94327 0.97530 1.18453 0.95255 0.92782 0.90347 1.21145 1.10801 0.92340 0.95553 1.67851 1.14996 1.08898 1.20130 1.22884 1.11014 1.02170 0.93163 1.23904 0.92657 0.92474 0.99245 1.69555 1.22027 1.08295 1.20977 1.20730 0.90227 0.94488 0.87561 1.20097 1.23828 0.95176 1.04785 0.87788 1.27134 0.94562 1.04846 0.93620 1.70115 1.20591 1.38679 1.05648 0.85279 0.79865 0.75491 0.79670 1.17877 1.18636 1.17231 0.92335 0.87131 0.95946 0.81040 0.88483 0.84911 0.88458 0.85279 0.82824 0.82500 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 11.13 113.37 1.26 2.73 16 2 O -0.33 -14.12 9.36 -91.97 -0.86 -14.98 16 3 C 0.05 1.97 5.73 22.88 0.13 2.10 16 4 C 0.09 3.24 7.30 22.40 0.16 3.40 16 5 F -0.13 -4.40 17.10 44.97 0.77 -3.64 16 6 C -0.16 -4.60 9.33 22.51 0.21 -4.39 16 7 C -0.06 -1.96 6.10 22.57 0.14 -1.83 16 8 S -0.12 -2.99 22.55 -56.49 -1.27 -4.27 16 9 C -0.14 -1.97 9.14 113.37 1.04 -0.94 16 10 C -0.09 -3.65 7.41 22.68 0.17 -3.48 16 11 C 0.04 1.59 5.20 -19.97 -0.10 1.49 16 12 C -0.05 -2.54 6.14 43.57 0.27 -2.27 16 13 N -0.41 -20.64 9.97 -178.78 -1.78 -22.42 16 14 C -0.13 -6.12 11.17 84.87 0.95 -5.17 16 15 C 0.09 4.11 11.17 84.93 0.95 5.06 16 16 N -0.49 -26.51 8.09 -184.15 -1.49 -28.00 16 17 C 0.19 10.45 6.68 41.54 0.28 10.73 16 18 C -0.41 -20.61 8.25 23.34 0.19 -20.42 16 19 H 0.10 4.91 5.41 -2.91 -0.02 4.90 16 20 C 0.02 1.13 5.50 85.33 0.47 1.60 16 21 N -0.73 -36.40 11.51 21.86 0.25 -36.15 16 22 Si 0.98 34.77 29.56 68.60 2.03 36.80 16 23 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 24 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 25 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 26 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 28 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.17 3.58 5.84 -2.91 -0.02 3.56 16 30 H 0.10 1.19 7.74 -2.39 -0.02 1.17 16 31 H 0.13 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.10 1.18 7.74 -2.39 -0.02 1.16 16 33 H 0.13 5.38 7.44 -2.91 -0.02 5.35 16 34 H 0.15 6.06 8.06 -2.91 -0.02 6.03 16 35 H 0.16 6.23 8.06 -2.91 -0.02 6.21 16 36 H 0.29 12.91 8.29 -92.71 -0.77 12.14 16 Total: -1.00 -65.12 330.87 4.89 -60.23 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 1.14 Total: 23.82 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 6.11 Total: -11.39 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -3.02 Total: -86.57 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.86 Total: -14.98 kcal Atomic # 9 Polarization: -4.40 SS G_CDS: 0.77 Total: -3.64 kcal Atomic # 14 Polarization: 34.77 SS G_CDS: 2.03 Total: 36.80 kcal Atomic # 16 Polarization: -2.99 SS G_CDS: -1.27 Total: -4.27 kcal Total: -65.12 4.89 -60.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245225413.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.800 kcal (2) G-P(sol) polarization free energy of solvation -65.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds