Wall clock time and date at job start Tue Mar 31 2020 12:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47115 * 2 1 4 4 C 1.35871 * 117.00094 * 180.02562 * 3 2 1 5 5 C 1.39159 * 119.91823 * 269.97770 * 4 3 2 6 6 F 1.35095 * 119.96414 * 359.97438 * 5 4 3 7 7 C 1.37933 * 120.06438 * 179.69507 * 5 4 3 8 8 C 1.39768 * 119.90018 * 0.60189 * 7 5 4 9 9 C 1.47769 * 120.07504 * 179.69680 * 8 7 5 10 10 C 1.39237 * 120.33991 * 129.73049 * 9 8 7 11 11 C 1.38027 * 119.97901 * 179.97438 * 10 9 8 12 12 C 1.38964 * 120.68019 * 359.97438 * 11 10 9 13 13 C 1.36401 * 120.70599 * 359.97438 * 12 11 10 14 14 C 1.40772 * 119.98713 * 0.02562 * 13 12 11 15 15 C 1.40844 * 120.33382 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99576 * 149.36864 * 15 14 13 17 17 C 1.40035 * 120.00129 * 329.37154 * 15 14 13 18 18 N 1.30791 * 120.00261 * 162.45464 * 17 15 14 19 19 Si 1.86804 * 119.99821 * 342.45185 * 17 15 14 20 20 H 1.48502 * 109.47065 * 95.37472 * 19 17 15 21 21 H 1.48504 * 109.47114 * 215.37501 * 19 17 15 22 22 H 1.48503 * 109.47349 * 335.37360 * 19 17 15 23 23 C 1.39704 * 119.84147 * 359.42195 * 8 7 5 24 24 C 1.37924 * 119.93150 * 0.27579 * 23 8 7 25 25 Cl 1.73604 * 119.94933 * 179.97438 * 24 23 8 26 26 H 1.09006 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46891 * 299.99817 * 1 2 3 28 28 H 1.08995 * 109.47116 * 60.00293 * 1 2 3 29 29 H 1.08997 * 109.46895 * 239.99708 * 2 1 3 30 30 H 1.09004 * 109.46860 * 119.99705 * 2 1 3 31 31 H 1.08001 * 120.04912 * 180.31868 * 7 5 4 32 32 H 1.07999 * 120.01132 * 0.26224 * 10 9 8 33 33 H 1.07995 * 119.66154 * 179.97438 * 11 10 9 34 34 H 1.07999 * 119.64878 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.01006 * 180.02562 * 13 12 11 36 36 H 0.97003 * 120.00141 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.03212 * 180.25946 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3534 1.5254 -0.0005 5 6 4.0419 1.6166 1.2053 6 9 3.3703 1.5286 2.3742 7 6 5.4102 1.7911 1.2083 8 6 6.1027 1.8887 -0.0018 9 6 7.5677 2.0823 -0.0031 10 6 8.3849 1.2621 -0.7764 11 6 9.7523 1.4499 -0.7724 12 6 10.3280 2.4533 -0.0025 13 6 9.5537 3.2735 0.7646 14 6 8.1559 3.1076 0.7822 15 6 7.3495 3.9500 1.5720 16 1 6.3435 4.1849 1.2572 17 6 7.8522 4.4831 2.7654 18 7 7.2660 5.5123 3.3201 19 14 9.3601 3.7240 3.5652 20 1 10.5726 4.4712 3.1444 21 1 9.2243 3.7925 5.0424 22 1 9.4823 2.3051 3.1446 23 6 5.4074 1.7971 -1.2100 24 6 4.0401 1.6163 -1.2052 25 17 3.1755 1.5031 -2.7064 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.9450 1.8567 2.1443 32 1 7.9486 0.4821 -1.3827 33 1 10.3814 0.8104 -1.3738 34 1 11.3998 2.5852 -0.0115 35 1 10.0129 4.0501 1.3584 36 1 7.6140 5.8813 4.1469 37 1 5.9401 1.8679 -2.1469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245822101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:20 Heat of formation + Delta-G solvation = -55.785602 kcal Electronic energy + Delta-G solvation = -24006.080123 eV Core-core repulsion = 20267.293888 eV Total energy + Delta-G solvation = -3738.786235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.52751 -39.60082 -38.32611 -36.90832 -36.15141 -33.84515 -32.14185 -30.91093 -30.62730 -29.99796 -27.77228 -25.35339 -23.32610 -22.71566 -22.37449 -21.24543 -20.09648 -18.03486 -17.55780 -16.98002 -16.73951 -15.75471 -15.59083 -14.97339 -14.85016 -14.54646 -14.40687 -14.08246 -13.92006 -13.74799 -13.11113 -12.76951 -12.74559 -12.51759 -12.26113 -12.12644 -12.04399 -11.62241 -11.45414 -11.32152 -11.07356 -10.98078 -10.92580 -10.76906 -10.39177 -9.97265 -9.79941 -9.76006 -9.32209 -8.49465 -8.38931 -7.81384 -7.53498 -7.13546 -4.66704 1.13093 1.40856 2.23072 2.39291 2.53328 2.98703 3.09255 3.18706 3.53014 3.81920 3.93250 4.33074 4.56514 4.96258 5.12133 5.18619 5.21190 5.31271 5.32562 5.45731 5.62439 5.78037 5.83190 5.85170 5.93134 6.00681 6.10820 6.15354 6.30150 6.41801 6.52733 6.68263 6.84860 6.95220 6.98915 7.19400 7.45257 7.54663 7.61330 7.69074 7.90975 8.16078 8.44011 8.58041 9.86735 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.004601 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.342369 B = 6084.347561 C = 7271.965481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.318 6.318 4 C 0.040 3.960 5 C 0.094 3.906 6 F -0.132 7.132 7 C -0.115 4.115 8 C 0.059 3.941 9 C -0.187 4.187 10 C -0.050 4.050 11 C -0.248 4.248 12 C -0.069 4.069 13 C -0.229 4.229 14 C 0.112 3.888 15 C -0.436 4.436 16 H 0.097 0.903 17 C 0.084 3.916 18 N -0.790 5.790 19 Si 0.908 3.092 20 H -0.268 1.268 21 H -0.288 1.288 22 H -0.241 1.241 23 C -0.121 4.121 24 C -0.025 4.025 25 Cl -0.064 7.064 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.152 0.848 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.289 0.711 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.488 -8.850 -4.840 11.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 O -0.235 6.235 4 C -0.005 4.005 5 C 0.074 3.926 6 F -0.111 7.111 7 C -0.134 4.134 8 C 0.058 3.942 9 C -0.188 4.188 10 C -0.068 4.068 11 C -0.267 4.267 12 C -0.087 4.087 13 C -0.248 4.248 14 C 0.109 3.891 15 C -0.463 4.463 16 H 0.115 0.885 17 C -0.138 4.138 18 N -0.412 5.412 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.164 1.164 23 C -0.140 4.140 24 C -0.052 4.052 25 Cl -0.035 7.035 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.170 0.830 32 H 0.117 0.883 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.837 -8.505 -4.722 11.345 hybrid contribution 0.589 -0.183 0.541 0.820 sum -5.248 -8.687 -4.181 10.977 Atomic orbital electron populations 1.21724 0.93200 1.02250 1.03324 1.22750 0.95568 0.82716 1.00636 1.86100 1.16496 1.26805 1.94112 1.18167 0.84013 1.08370 0.89987 1.17744 0.90125 1.04457 0.80309 1.91476 1.80443 1.93712 1.45425 1.21495 0.90904 0.99943 1.01040 1.18504 0.93581 0.91905 0.90195 1.18338 0.89207 1.01755 1.09535 1.20687 0.93443 0.96843 0.95863 1.20297 0.94347 1.03977 1.08051 1.20457 0.97818 0.94712 0.95702 1.20806 0.94385 1.03498 1.06104 1.17590 0.91416 0.89534 0.90561 1.19541 1.01932 1.21140 1.03665 0.88473 1.26240 0.97700 0.92545 0.97272 1.69672 1.38241 1.16162 1.17166 0.86352 0.80558 0.82692 0.77026 1.19388 1.21504 1.16445 1.21188 0.90751 1.02749 0.99350 1.20853 0.92330 1.06129 0.85926 1.98336 1.77256 1.96588 1.31364 0.90887 0.91661 0.91671 0.92835 0.93043 0.83049 0.88336 0.88552 0.88719 0.87926 0.90039 0.84343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.74 6.78 37.16 0.25 1.00 16 3 O -0.32 -5.27 9.36 -19.34 -0.18 -5.45 16 4 C 0.04 0.71 5.73 -38.97 -0.22 0.49 16 5 C 0.09 1.76 7.30 -39.35 -0.29 1.47 16 6 F -0.13 -2.50 17.10 2.25 0.04 -2.46 16 7 C -0.11 -2.26 8.07 -39.12 -0.32 -2.57 16 8 C 0.06 1.15 4.93 -104.88 -0.52 0.63 16 9 C -0.19 -3.94 5.52 -104.23 -0.58 -4.51 16 10 C -0.05 -0.96 9.51 -39.29 -0.37 -1.33 16 11 C -0.25 -4.68 10.03 -39.39 -0.40 -5.08 16 12 C -0.07 -1.37 9.96 -39.97 -0.40 -1.76 16 13 C -0.23 -5.09 7.09 -39.29 -0.28 -5.37 16 14 C 0.11 2.60 5.09 -106.55 -0.54 2.06 16 15 C -0.44 -10.78 7.52 -37.92 -0.29 -11.07 16 16 H 0.10 2.58 7.04 -52.49 -0.37 2.21 16 17 C 0.08 2.04 5.41 -17.32 -0.09 1.95 16 18 N -0.79 -19.84 13.93 55.55 0.77 -19.06 16 19 Si 0.91 19.30 24.52 -169.99 -4.17 15.14 16 20 H -0.27 -5.54 6.72 56.52 0.38 -5.16 16 21 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.24 -5.23 6.85 56.52 0.39 -4.84 16 23 C -0.12 -2.11 9.29 -39.15 -0.36 -2.47 16 24 C -0.03 -0.42 6.32 -39.43 -0.25 -0.67 16 25 Cl -0.06 -0.94 28.49 -51.86 -1.48 -2.42 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.15 3.10 7.33 -52.49 -0.38 2.71 16 32 H 0.10 1.63 8.04 -52.49 -0.42 1.21 16 33 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.10 2.27 4.79 -52.49 -0.25 2.02 16 36 H 0.29 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.14 2.20 8.04 -52.48 -0.42 1.77 16 LS Contribution 333.28 15.07 5.02 5.02 Total: -1.00 -25.33 333.28 -8.24 -33.56 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -3.98 Total: 4.04 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: -4.26 Total: -28.36 kcal Atomic # 7 Polarization: -19.84 SS G_CDS: 0.77 Total: -19.06 kcal Atomic # 8 Polarization: -5.27 SS G_CDS: -0.18 Total: -5.45 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.17 Total: 15.14 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.48 Total: -2.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.33 -8.24 -33.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245822101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.224 kcal (2) G-P(sol) polarization free energy of solvation -25.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds