Wall clock time and date at job start Tue Mar 31 2020 12:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42904 * 109.47115 * 2 1 4 4 C 1.35871 * 117.00094 * 180.02562 * 3 2 1 5 5 C 1.39159 * 119.91823 * 269.97770 * 4 3 2 6 6 F 1.35095 * 119.96414 * 359.97438 * 5 4 3 7 7 C 1.37933 * 120.06438 * 179.69507 * 5 4 3 8 8 C 1.39768 * 119.90018 * 0.60189 * 7 5 4 9 9 C 1.47769 * 120.07504 * 179.69680 * 8 7 5 10 10 C 1.39237 * 120.33991 * 129.73049 * 9 8 7 11 11 C 1.38027 * 119.97901 * 179.97438 * 10 9 8 12 12 C 1.38964 * 120.68019 * 359.97438 * 11 10 9 13 13 C 1.36401 * 120.70599 * 359.97438 * 12 11 10 14 14 C 1.40772 * 119.98713 * 0.02562 * 13 12 11 15 15 C 1.40844 * 120.33382 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99576 * 149.36864 * 15 14 13 17 17 C 1.40035 * 120.00129 * 329.37154 * 15 14 13 18 18 N 1.30791 * 120.00261 * 162.45464 * 17 15 14 19 19 Si 1.86804 * 119.99821 * 342.45185 * 17 15 14 20 20 H 1.48502 * 109.47065 * 95.37472 * 19 17 15 21 21 H 1.48504 * 109.47114 * 215.37501 * 19 17 15 22 22 H 1.48503 * 109.47349 * 335.37360 * 19 17 15 23 23 C 1.39704 * 119.84147 * 359.42195 * 8 7 5 24 24 C 1.37924 * 119.93150 * 0.27579 * 23 8 7 25 25 Cl 1.73604 * 119.94933 * 179.97438 * 24 23 8 26 26 H 1.09006 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46891 * 299.99817 * 1 2 3 28 28 H 1.08995 * 109.47116 * 60.00293 * 1 2 3 29 29 H 1.08997 * 109.46895 * 239.99708 * 2 1 3 30 30 H 1.09004 * 109.46860 * 119.99705 * 2 1 3 31 31 H 1.08001 * 120.04912 * 180.31868 * 7 5 4 32 32 H 1.07999 * 120.01132 * 0.26224 * 10 9 8 33 33 H 1.07995 * 119.66154 * 179.97438 * 11 10 9 34 34 H 1.07999 * 119.64878 * 179.97438 * 12 11 10 35 35 H 1.08002 * 120.01006 * 180.02562 * 13 12 11 36 36 H 0.97003 * 120.00141 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.03212 * 180.25946 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3534 1.5254 -0.0005 5 6 4.0419 1.6166 1.2053 6 9 3.3703 1.5286 2.3742 7 6 5.4102 1.7911 1.2083 8 6 6.1027 1.8887 -0.0018 9 6 7.5677 2.0823 -0.0031 10 6 8.3849 1.2621 -0.7764 11 6 9.7523 1.4499 -0.7724 12 6 10.3280 2.4533 -0.0025 13 6 9.5537 3.2735 0.7646 14 6 8.1559 3.1076 0.7822 15 6 7.3495 3.9500 1.5720 16 1 6.3435 4.1849 1.2572 17 6 7.8522 4.4831 2.7654 18 7 7.2660 5.5123 3.3201 19 14 9.3601 3.7240 3.5652 20 1 10.5726 4.4712 3.1444 21 1 9.2243 3.7925 5.0424 22 1 9.4823 2.3051 3.1446 23 6 5.4074 1.7971 -1.2100 24 6 4.0401 1.6163 -1.2052 25 17 3.1755 1.5031 -2.7064 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 5.9450 1.8567 2.1443 32 1 7.9486 0.4821 -1.3827 33 1 10.3814 0.8104 -1.3738 34 1 11.3998 2.5852 -0.0115 35 1 10.0129 4.0501 1.3584 36 1 7.6140 5.8813 4.1469 37 1 5.9401 1.8679 -2.1469 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245822101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:20 Heat of formation + Delta-G solvation = -66.407643 kcal Electronic energy + Delta-G solvation = -24006.540729 eV Core-core repulsion = 20267.293888 eV Total energy + Delta-G solvation = -3739.246842 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.072 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.03347 -41.01249 -39.82450 -38.29751 -37.47466 -35.58041 -33.41264 -32.42741 -32.00929 -31.47934 -29.24719 -27.03973 -24.56249 -24.17885 -23.64229 -22.86050 -21.65594 -19.47496 -19.19731 -18.45857 -18.14372 -17.37134 -17.02183 -16.40651 -16.14922 -15.91470 -15.86734 -15.65108 -15.44915 -15.20264 -14.69887 -14.32251 -13.99574 -13.82507 -13.72216 -13.43900 -13.30820 -13.05344 -12.74248 -12.66547 -12.57740 -12.46960 -12.36843 -12.10686 -11.92577 -11.61327 -11.47382 -11.01812 -10.97462 -9.98635 -9.82615 -9.46708 -9.08861 -8.91449 -6.47818 -0.31192 -0.04584 0.77758 0.88165 0.91596 1.26318 1.40280 1.48113 2.09032 2.19090 2.52774 2.62231 3.12256 3.51764 3.70275 3.82322 4.09323 4.14967 4.16875 4.24079 4.33679 4.37252 4.43880 4.56759 4.68346 4.79595 4.86249 4.87870 4.96429 5.00243 5.06444 5.21397 5.30510 5.36153 5.47883 5.57853 5.85765 5.91891 6.02493 6.23092 6.29795 6.40511 6.72186 6.81254 8.15369 Molecular weight = 320.07amu Principal moments of inertia in cm(-1) A = 0.015386 B = 0.004601 C = 0.003849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.342369 B = 6084.347561 C = 7271.965481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.332 6.332 4 C 0.051 3.949 5 C 0.078 3.922 6 F -0.138 7.138 7 C -0.122 4.122 8 C 0.039 3.961 9 C -0.187 4.187 10 C -0.055 4.055 11 C -0.229 4.229 12 C -0.074 4.074 13 C -0.248 4.248 14 C 0.093 3.907 15 C -0.464 4.464 16 H 0.061 0.939 17 C 0.050 3.950 18 N -0.841 5.841 19 Si 0.957 3.043 20 H -0.257 1.257 21 H -0.282 1.282 22 H -0.248 1.248 23 C -0.107 4.107 24 C -0.027 4.027 25 Cl -0.037 7.037 26 H 0.101 0.899 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.134 0.866 34 H 0.126 0.874 35 H 0.097 0.903 36 H 0.293 0.707 37 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 -11.286 -7.237 14.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.250 6.250 4 C 0.005 3.995 5 C 0.058 3.942 6 F -0.117 7.117 7 C -0.141 4.141 8 C 0.038 3.962 9 C -0.188 4.188 10 C -0.073 4.073 11 C -0.247 4.247 12 C -0.092 4.092 13 C -0.267 4.267 14 C 0.090 3.910 15 C -0.492 4.492 16 H 0.079 0.921 17 C -0.166 4.166 18 N -0.467 5.467 19 Si 0.781 3.219 20 H -0.183 1.183 21 H -0.209 1.209 22 H -0.172 1.172 23 C -0.126 4.126 24 C -0.055 4.055 25 Cl -0.008 7.008 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.199 -10.952 -7.132 14.066 hybrid contribution 0.294 0.362 1.019 1.120 sum -4.904 -10.590 -6.114 13.175 Atomic orbital electron populations 1.21763 0.90952 1.04104 1.03179 1.23062 0.97340 0.80859 1.01159 1.86074 1.15563 1.29237 1.94124 1.18237 0.84612 1.06877 0.89774 1.17842 0.89987 1.05592 0.80778 1.91450 1.80443 1.93889 1.45870 1.21370 0.91412 1.00676 1.00664 1.18521 0.93314 0.93493 0.90868 1.18648 0.90325 1.01130 1.08696 1.21084 0.93657 0.96955 0.95630 1.20832 0.94660 1.02889 1.06366 1.20855 0.99415 0.94209 0.94753 1.20921 0.94175 1.04430 1.07189 1.17778 0.92113 0.90052 0.91039 1.19351 1.00877 1.23755 1.05256 0.92126 1.26816 0.99758 0.92612 0.97383 1.69716 1.40469 1.18058 1.18420 0.85602 0.78384 0.81464 0.76466 1.18262 1.20932 1.17150 1.21308 0.91004 1.01112 0.99158 1.20863 0.92345 1.05492 0.86778 1.98345 1.76666 1.96405 1.29398 0.88005 0.92163 0.91457 0.91760 0.93068 0.85051 0.85063 0.84793 0.85604 0.88543 0.89599 0.82283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 10.28 71.98 0.74 -1.84 16 2 C 0.05 1.19 6.78 71.98 0.49 1.68 16 3 O -0.33 -10.69 9.36 -92.10 -0.86 -11.56 16 4 C 0.05 1.77 5.73 22.67 0.13 1.90 16 5 C 0.08 3.02 7.30 22.42 0.16 3.18 16 6 F -0.14 -5.43 17.10 44.97 0.77 -4.66 16 7 C -0.12 -5.01 8.07 22.57 0.18 -4.83 16 8 C 0.04 1.51 4.93 -20.03 -0.10 1.41 16 9 C -0.19 -7.73 5.52 -19.61 -0.11 -7.84 16 10 C -0.06 -1.93 9.51 22.46 0.21 -1.72 16 11 C -0.23 -7.63 10.03 22.39 0.22 -7.41 16 12 C -0.07 -2.72 9.96 22.01 0.22 -2.50 16 13 C -0.25 -10.85 7.09 22.46 0.16 -10.69 16 14 C 0.09 4.38 5.09 -21.11 -0.11 4.27 16 15 C -0.46 -24.35 7.52 23.34 0.18 -24.18 16 16 H 0.06 3.51 7.04 -2.91 -0.02 3.49 16 17 C 0.05 2.57 5.41 85.28 0.46 3.04 16 18 N -0.84 -45.03 13.93 21.84 0.30 -44.73 16 19 Si 0.96 40.95 24.52 68.60 1.68 42.63 16 20 H -0.26 -10.40 6.72 99.48 0.67 -9.73 16 21 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.25 -10.68 6.85 99.48 0.68 -10.00 16 23 C -0.11 -3.56 9.29 22.55 0.21 -3.35 16 24 C -0.03 -0.88 6.32 22.37 0.14 -0.74 16 25 Cl -0.04 -0.99 28.49 -2.72 -0.08 -1.07 16 26 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 27 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.13 5.83 7.33 -2.91 -0.02 5.81 16 32 H 0.13 3.72 8.04 -2.91 -0.02 3.69 16 33 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 34 H 0.13 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.10 4.27 4.79 -2.91 -0.01 4.25 16 36 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 37 H 0.16 4.56 8.04 -2.91 -0.02 4.54 16 Total: -1.00 -57.03 333.28 6.05 -50.98 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 1.04 Total: 18.01 kcal Atomic # 6 Polarization: -52.80 SS G_CDS: 3.19 Total: -49.61 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.30 Total: -44.73 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.86 Total: -11.56 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 0.77 Total: -4.66 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 1.68 Total: 42.63 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -0.08 Total: -1.07 kcal Total: -57.03 6.05 -50.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245822101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.429 kcal (2) G-P(sol) polarization free energy of solvation -57.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds