Wall clock time and date at job start Tue Mar 31 2020 12:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48505 * 109.47091 * 239.99873 * 3 2 1 5 5 H 1.48503 * 109.47066 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47397 * 119.99916 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 C 1.50703 * 109.47148 * 180.28037 * 15 13 12 17 17 O 1.21283 * 120.00006 * 359.97438 * 16 15 13 18 18 N 1.34775 * 120.00069 * 180.02562 * 16 15 13 19 19 C 1.46499 * 120.00178 * 179.97438 * 18 16 15 20 20 C 1.52992 * 109.47371 * 179.97438 * 19 18 16 21 21 F 1.39906 * 109.46849 * 60.00160 * 20 19 18 22 22 F 1.39902 * 109.47480 * 179.97438 * 20 19 18 23 23 F 1.39903 * 109.47360 * 300.00131 * 20 19 18 24 24 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 25 25 N 1.30903 * 108.38945 * 359.60960 * 24 11 10 26 26 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 27 27 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 28 28 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 29 29 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 30 30 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 31 31 H 0.97002 * 120.00050 * 359.97438 * 18 16 15 32 32 H 1.09000 * 109.46858 * 300.00121 * 19 18 16 33 33 H 1.08998 * 109.46827 * 59.99269 * 19 18 16 34 34 H 1.07999 * 125.80209 * 179.74829 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.1008 1.6963 -1.2125 5 1 1.2819 2.7464 -0.0006 6 1 3.1007 1.6964 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 6 -1.3373 -8.8513 -0.0123 17 8 -2.3287 -8.1527 -0.0114 18 7 -1.4588 -10.1935 -0.0180 19 6 -2.7883 -10.8087 -0.0235 20 6 -2.6455 -12.3319 -0.0299 21 9 -1.9478 -12.7396 1.1122 22 9 -3.9152 -12.9194 -0.0345 23 9 -1.9429 -12.7297 -1.1724 24 6 -0.3513 -3.8198 -0.0064 25 7 -0.0716 -2.5410 -0.0010 26 1 -0.4851 0.8401 -0.0004 27 1 2.9300 -3.8708 0.0032 28 1 1.8707 -6.3427 0.0017 29 1 0.5782 -8.5285 -0.8961 30 1 0.5737 -8.5362 0.8839 31 1 -0.6658 -10.7523 -0.0183 32 1 -3.3359 -10.4984 0.8665 33 1 -3.3318 -10.4913 -0.9134 34 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341981861.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:01 Heat of formation + Delta-G solvation = -133.159952 kcal Electronic energy + Delta-G solvation = -25598.992132 eV Core-core repulsion = 20926.497501 eV Total energy + Delta-G solvation = -4672.494631 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.63293 -48.14110 -48.11367 -40.35626 -39.54858 -38.15724 -35.29122 -34.09789 -33.13798 -31.45674 -30.19262 -29.13296 -27.43607 -24.82874 -23.82049 -21.73518 -20.93709 -20.25000 -19.36465 -19.10440 -18.87684 -18.43822 -17.61253 -16.82950 -16.26568 -16.10767 -15.63509 -15.37927 -15.12895 -15.00824 -14.88080 -14.56320 -14.53418 -14.26359 -14.24797 -14.05074 -13.54457 -13.51409 -13.15124 -13.01079 -12.82754 -12.38385 -12.03289 -11.65390 -11.38397 -11.21825 -10.93541 -10.54472 -10.13906 -10.09555 -9.64032 -9.12747 -8.97960 -8.75529 -8.02478 -6.66568 -6.52747 -4.20006 2.02429 2.43690 2.46810 2.87431 3.06027 3.06862 3.10299 3.19447 3.51071 3.58357 3.70535 3.77938 3.91243 4.36318 4.45117 4.69527 4.74269 4.90620 5.00432 5.04443 5.12559 5.32042 5.75102 6.26518 6.48704 6.90690 6.97005 6.99823 7.16540 7.27946 7.88860 7.96302 8.21393 8.31758 8.67650 8.91311 9.41187 9.70793 10.43208 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.056307 B = 0.001997 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.153704 B =14020.775072 C =14332.785706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.324 4.324 8 H 0.115 0.885 9 N -0.144 5.144 10 C -0.085 4.085 11 C -0.058 4.058 12 N -0.627 5.627 13 C 0.496 3.504 14 O -0.493 6.493 15 C -0.158 4.158 16 C 0.520 3.480 17 O -0.475 6.475 18 N -0.740 5.740 19 C 0.080 3.920 20 C 0.449 3.551 21 F -0.179 7.179 22 F -0.174 7.174 23 F -0.179 7.179 24 C -0.033 4.033 25 N -0.260 5.260 26 H 0.275 0.725 27 H 0.145 0.855 28 H 0.395 0.605 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.405 0.595 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.585 -23.388 -0.050 23.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.456 4.456 8 H 0.133 0.867 9 N 0.089 4.911 10 C -0.236 4.236 11 C -0.163 4.163 12 N -0.271 5.271 13 C 0.279 3.721 14 O -0.366 6.366 15 C -0.201 4.201 16 C 0.305 3.695 17 O -0.344 6.344 18 N -0.398 5.398 19 C -0.045 4.045 20 C 0.394 3.606 21 F -0.160 7.160 22 F -0.155 7.155 23 F -0.160 7.160 24 C -0.209 4.209 25 N -0.092 5.092 26 H 0.086 0.914 27 H 0.163 0.837 28 H 0.228 0.772 29 H 0.139 0.861 30 H 0.139 0.861 31 H 0.240 0.760 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -0.685 -21.142 -0.048 21.153 hybrid contribution 1.808 -1.121 0.000 2.127 sum 1.122 -22.262 -0.048 22.291 Atomic orbital electron populations 1.70211 1.06114 1.28064 1.35281 1.25640 0.95701 1.00253 0.95555 0.85901 0.79130 0.79706 0.79423 1.19192 1.20162 1.19189 1.19803 0.91595 0.80592 1.53619 0.86710 1.44546 1.04064 1.03283 1.39237 1.21242 0.96775 0.85408 1.20175 1.17237 0.94247 0.81196 1.23663 1.42437 1.07884 1.04503 1.72286 1.19607 0.85057 0.87388 0.80078 1.90760 1.25034 1.73826 1.46974 1.21501 0.96354 0.95629 1.06599 1.20109 0.91783 0.80820 0.76804 1.90928 1.38648 1.60536 1.44293 1.45732 1.07122 1.07564 1.79416 1.22394 0.88788 0.85182 1.08166 1.20588 0.74154 0.92022 0.73822 1.93230 1.79455 1.92339 1.51009 1.93232 1.39971 1.86125 1.96202 1.93230 1.79207 1.92592 1.50994 1.24146 0.98131 0.90737 1.07884 1.78262 0.90077 1.15134 1.25691 0.91420 0.83747 0.77191 0.86067 0.86074 0.75979 0.86741 0.86750 0.80684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.79 11.81 55.49 0.66 -21.14 16 2 C 0.05 1.19 5.50 -17.50 -0.10 1.09 16 3 Si 0.93 19.01 29.55 -169.99 -5.02 13.99 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 7 C -0.32 -8.60 10.25 -14.82 -0.15 -8.76 16 8 H 0.12 2.70 7.83 -52.49 -0.41 2.29 16 9 N -0.14 -3.96 3.74 -11.41 -0.04 -4.01 16 10 C -0.09 -1.99 11.49 -16.39 -0.19 -2.18 16 11 C -0.06 -1.33 6.90 -83.84 -0.58 -1.91 16 12 N -0.63 -10.49 5.47 -10.00 -0.05 -10.55 16 13 C 0.50 8.23 7.79 -10.98 -0.09 8.15 16 14 O -0.49 -10.92 11.33 -18.98 -0.22 -11.13 16 15 C -0.16 -1.50 6.19 -29.03 -0.18 -1.68 16 16 C 0.52 6.04 7.82 -10.98 -0.09 5.95 16 17 O -0.47 -8.25 14.18 -18.96 -0.27 -8.51 16 18 N -0.74 -5.48 5.42 -60.30 -0.33 -5.80 16 19 C 0.08 0.56 5.64 -4.05 -0.02 0.53 16 20 C 0.45 2.91 3.11 37.15 0.12 3.02 16 21 F -0.18 -1.25 17.18 2.25 0.04 -1.22 16 22 F -0.17 -1.29 17.32 2.25 0.04 -1.25 16 23 F -0.18 -1.25 17.18 2.25 0.04 -1.22 16 24 C -0.03 -0.90 10.85 -17.04 -0.18 -1.08 16 25 N -0.26 -7.70 10.40 30.80 0.32 -7.38 16 26 H 0.28 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.15 2.77 8.06 -52.49 -0.42 2.35 16 28 H 0.40 4.71 8.83 -40.82 -0.36 4.35 16 29 H 0.12 0.73 8.14 -51.92 -0.42 0.30 16 30 H 0.12 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.40 1.83 8.36 -40.82 -0.34 1.48 16 32 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.18 4.75 5.92 -52.49 -0.31 4.44 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -37.94 320.29 -4.14 -42.09 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -2.67 Total: 8.15 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: -1.46 Total: 3.15 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.55 Total: -48.87 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.48 Total: -19.65 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.12 Total: -3.68 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -37.94 -4.14 -42.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341981861.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.074 kcal (2) G-P(sol) polarization free energy of solvation -37.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds