Wall clock time and date at job start Tue Mar 31 2020 12:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.39783 * 119.99548 * 2 1 4 4 C 1.39042 * 119.98964 * 0.02562 * 3 2 1 5 5 C 1.38155 * 120.24595 * 179.97438 * 4 3 2 6 6 C 1.38177 * 120.21492 * 0.02562 * 5 4 3 7 7 Cl 1.73601 * 120.01583 * 179.97438 * 6 5 4 8 8 C 1.39703 * 119.96761 * 359.97438 * 6 5 4 9 9 C 1.47756 * 120.11895 * 179.97438 * 8 6 5 10 10 O 1.21589 * 120.00630 * 359.97438 * 9 8 6 11 11 N 1.34787 * 119.99776 * 179.97438 * 9 8 6 12 12 C 1.40525 * 119.99928 * 180.02562 * 11 9 8 13 13 C 1.40663 * 126.08428 * 359.97139 * 12 11 9 14 14 N 1.30913 * 108.38345 * 179.76276 * 13 12 11 15 15 N 1.40070 * 108.41170 * 0.41019 * 14 13 12 16 16 C 1.37314 * 126.06793 * 179.85079 * 15 14 13 17 17 H 1.07998 * 120.00425 * 185.44873 * 16 15 14 18 18 C 1.38989 * 119.99795 * 5.17653 * 16 15 14 19 19 N 1.31295 * 120.00227 * 354.31110 * 18 16 15 20 20 Si 1.86803 * 120.00145 * 174.31102 * 18 16 15 21 21 H 1.48494 * 109.47248 * 94.97708 * 20 18 16 22 22 H 1.48500 * 109.47261 * 214.98192 * 20 18 16 23 23 H 1.48504 * 109.47046 * 334.98228 * 20 18 16 24 24 C 1.35695 * 126.08411 * 179.97438 * 12 11 9 25 25 C 1.38580 * 119.97917 * 180.25561 * 3 2 1 26 26 H 1.09000 * 109.47293 * 59.99319 * 1 2 3 27 27 H 1.08995 * 109.46788 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46937 * 299.99676 * 1 2 3 29 29 H 0.96996 * 120.00304 * 180.02562 * 2 1 3 30 30 H 1.08001 * 119.87624 * 359.95905 * 4 3 2 31 31 H 1.08002 * 119.89183 * 180.02562 * 5 4 3 32 32 H 0.96998 * 119.99754 * 359.97438 * 11 9 8 33 33 H 1.07997 * 125.80886 * 0.02562 * 13 12 11 34 34 H 0.96997 * 120.00133 * 179.97438 * 19 18 16 35 35 H 1.08001 * 126.24527 * 359.97438 * 24 12 11 36 36 H 1.07994 * 120.11040 * 0.02679 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1638 1.2106 0.0000 4 6 1.4683 2.4146 0.0005 5 6 2.1537 3.6142 0.0011 6 6 3.5354 3.6256 0.0005 7 17 4.3913 5.1360 0.0006 8 6 4.2432 2.4212 0.0000 9 6 5.7208 2.4296 -0.0011 10 8 6.3229 3.4859 -0.0021 11 7 6.4013 1.2661 -0.0011 12 6 7.8065 1.2740 -0.0017 13 6 8.6285 2.4154 -0.0028 14 7 9.8779 2.0244 0.0021 15 7 9.9032 0.6240 -0.0029 16 6 11.0276 -0.1643 -0.0029 17 1 10.9355 -1.2363 -0.0959 18 6 12.2845 0.4180 0.1110 19 7 12.4052 1.7254 0.1061 20 14 13.8020 -0.6594 0.2709 21 1 14.4079 -0.8633 -1.0694 22 1 14.7869 0.0021 1.1641 23 1 13.4176 -1.9738 0.8453 24 6 8.6119 0.1819 -0.0012 25 6 3.5496 1.2102 -0.0054 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.9501 -0.8400 -0.0004 30 1 0.3883 2.4119 0.0003 31 1 1.6076 4.5460 0.0019 32 1 5.9210 0.4234 0.0000 33 1 8.2871 3.4400 -0.0030 34 1 13.2823 2.1317 0.1860 35 1 8.2898 -0.8490 0.0000 36 1 4.0911 0.2759 -0.0100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361870179.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:20 Heat of formation + Delta-G solvation = 63.062097 kcal Electronic energy + Delta-G solvation = -23175.224733 eV Core-core repulsion = 19493.804834 eV Total energy + Delta-G solvation = -3681.419900 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 320.078 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.78307 -40.87891 -39.52882 -37.42795 -35.99190 -35.91148 -34.98760 -32.57980 -32.04790 -30.54538 -29.49560 -27.02990 -26.55066 -24.72783 -23.38946 -22.80069 -21.50946 -21.11568 -19.35318 -18.95727 -17.80213 -17.42482 -17.14909 -16.91657 -16.26193 -16.17036 -15.80664 -15.32634 -15.25975 -14.97275 -14.93999 -14.76699 -14.46304 -13.87973 -13.48867 -13.30881 -13.12010 -13.05581 -12.91179 -12.83084 -12.51084 -12.38909 -12.07385 -11.90694 -11.80868 -10.99908 -10.79625 -10.76245 -10.34283 -10.12340 -10.06000 -8.51266 -8.46206 -8.34023 -6.22557 -0.20873 0.36053 1.28306 1.40218 1.42442 1.58645 1.67137 1.94967 2.04237 2.27155 2.49214 2.55399 2.88805 2.93573 3.09959 3.69703 3.77630 4.21981 4.30507 4.35219 4.45289 4.51452 4.61997 4.77193 4.81162 4.87979 5.01930 5.03979 5.10281 5.16532 5.28282 5.31796 5.47955 5.53390 5.97349 6.29369 6.33633 6.73427 6.75741 6.81134 7.39169 7.48763 7.69848 8.53578 Molecular weight = 320.08amu Principal moments of inertia in cm(-1) A = 0.020982 B = 0.002905 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.170657 B = 9636.456992 C =10951.692295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.744 5.744 3 C 0.215 3.785 4 C -0.157 4.157 5 C -0.067 4.067 6 C -0.068 4.068 7 Cl -0.070 7.070 8 C -0.086 4.086 9 C 0.530 3.470 10 O -0.546 6.546 11 N -0.609 5.609 12 C -0.042 4.042 13 C -0.058 4.058 14 N -0.311 5.311 15 N -0.168 5.168 16 C -0.354 4.354 17 H 0.142 0.858 18 C -0.008 4.008 19 N -0.825 5.825 20 Si 1.020 2.980 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.242 1.242 24 C -0.079 4.079 25 C -0.155 4.155 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.411 0.589 30 H 0.164 0.836 31 H 0.157 0.843 32 H 0.416 0.584 33 H 0.167 0.833 34 H 0.276 0.724 35 H 0.190 0.810 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.727 -7.328 0.080 26.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.109 3.891 4 C -0.180 4.180 5 C -0.087 4.087 6 C -0.098 4.098 7 Cl -0.041 7.041 8 C -0.090 4.090 9 C 0.318 3.682 10 O -0.424 6.424 11 N -0.255 5.255 12 C -0.148 4.148 13 C -0.233 4.233 14 N -0.143 5.143 15 N 0.063 4.937 16 C -0.485 4.485 17 H 0.159 0.841 18 C -0.219 4.219 19 N -0.453 5.453 20 Si 0.838 3.162 21 H -0.190 1.190 22 H -0.203 1.203 23 H -0.165 1.165 24 C -0.229 4.229 25 C -0.179 4.179 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.077 0.923 29 H 0.247 0.753 30 H 0.181 0.819 31 H 0.175 0.825 32 H 0.254 0.746 33 H 0.183 0.817 34 H 0.086 0.914 35 H 0.207 0.793 36 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -24.104 -5.911 0.091 24.819 hybrid contribution 0.200 -0.599 0.019 0.632 sum -23.904 -6.510 0.109 24.775 Atomic orbital electron populations 1.21787 0.78286 1.04251 1.01653 1.44610 1.06882 1.04480 1.81276 1.17781 0.90199 0.88017 0.93063 1.21044 1.01388 0.89476 1.06069 1.21012 0.90099 1.00288 0.97262 1.20961 0.93216 0.86315 1.09332 1.98386 1.78124 1.30774 1.96813 1.19336 0.91071 0.93867 1.04775 1.18649 0.87934 0.83526 0.78083 1.90748 1.70217 1.31544 1.49940 1.42305 1.02823 1.09037 1.71346 1.17301 0.83385 0.92931 1.21180 1.24170 0.90414 0.99567 1.09158 1.78150 1.18526 0.90159 1.27508 1.44840 1.04564 1.03838 1.40472 1.20623 0.82574 0.91776 1.53518 0.84070 1.26909 1.03300 0.97489 0.94207 1.70413 1.25830 1.11858 1.37243 0.84578 0.74728 0.78017 0.78857 1.18960 1.20306 1.16510 1.21980 0.84021 0.98868 1.18068 1.20805 0.93169 0.96648 1.07233 0.92286 0.88669 0.92280 0.75319 0.81875 0.82543 0.74622 0.81663 0.91445 0.79327 0.83206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.36 9.94 127.77 1.27 1.63 16 2 N -0.74 -6.81 5.89 -360.88 -2.13 -8.94 16 3 C 0.21 3.33 6.65 38.15 0.25 3.59 16 4 C -0.16 -2.29 9.30 22.44 0.21 -2.09 16 5 C -0.07 -1.30 9.81 22.24 0.22 -1.08 16 6 C -0.07 -1.91 6.35 22.61 0.14 -1.77 16 7 Cl -0.07 -2.32 26.00 -2.72 -0.07 -2.39 16 8 C -0.09 -2.49 5.87 -20.09 -0.12 -2.60 16 9 C 0.53 20.24 7.73 86.76 0.67 20.91 16 10 O -0.55 -25.41 11.10 -4.00 -0.04 -25.45 16 11 N -0.61 -22.23 5.41 -306.58 -1.66 -23.89 16 12 C -0.04 -1.99 6.90 37.75 0.26 -1.72 16 13 C -0.06 -3.28 10.85 85.42 0.93 -2.35 16 14 N -0.31 -19.34 10.41 -56.46 -0.59 -19.93 16 15 N -0.17 -9.52 3.74 -190.01 -0.71 -10.23 16 16 C -0.35 -18.98 10.24 84.01 0.86 -18.12 16 17 H 0.14 6.52 7.84 -2.91 -0.02 6.49 16 18 C -0.01 -0.40 5.50 84.95 0.47 0.07 16 19 N -0.83 -48.70 11.83 21.66 0.26 -48.45 16 20 Si 1.02 39.11 29.56 68.60 2.03 41.14 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.28 -10.63 7.11 99.48 0.71 -9.92 16 23 H -0.24 -8.35 7.11 99.48 0.71 -7.64 16 24 C -0.08 -3.71 11.49 83.38 0.96 -2.75 16 25 C -0.15 -3.13 9.38 22.67 0.21 -2.92 16 26 H 0.06 0.23 7.94 -2.39 -0.02 0.21 16 27 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 28 H 0.06 0.23 7.94 -2.38 -0.02 0.21 16 29 H 0.41 2.61 8.84 -92.71 -0.82 1.79 16 30 H 0.16 1.32 6.71 -2.91 -0.02 1.31 16 31 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 32 H 0.42 11.05 6.86 -92.71 -0.64 10.42 16 33 H 0.17 9.57 5.91 -2.91 -0.02 9.55 16 34 H 0.28 14.96 8.31 -92.71 -0.77 14.19 16 35 H 0.19 6.87 8.06 -2.91 -0.02 6.85 16 36 H 0.15 2.31 6.40 -2.91 -0.02 2.29 16 Total: -1.00 -81.49 326.31 3.13 -78.36 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: -0.29 Total: 28.99 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: 6.33 Total: -9.22 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -4.83 Total: -111.42 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.04 Total: -25.45 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -0.07 Total: -2.39 kcal Total: -81.49 3.13 -78.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361870179.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.424 kcal (2) G-P(sol) polarization free energy of solvation -81.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds