Wall clock time and date at job start Tue Mar 31 2020 12:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48500 * 109.46754 * 269.99993 * 3 2 1 5 5 H 1.48500 * 109.47183 * 29.99690 * 3 2 1 6 6 H 1.48502 * 109.47511 * 150.00017 * 3 2 1 7 7 C 1.37881 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99912 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47144 * 59.99415 * 9 7 2 11 11 O 1.45196 * 109.47202 * 179.97438 * 9 7 2 12 12 C 1.34231 * 117.00269 * 209.99937 * 11 9 7 13 13 O 1.20832 * 119.99399 * 359.97438 * 12 11 9 14 14 C 1.50693 * 120.00288 * 179.97438 * 12 11 9 15 15 C 1.53003 * 109.47069 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46776 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 14 18 18 C 1.38423 * 122.53613 * 270.00211 * 17 16 15 19 19 C 1.33390 * 114.91977 * 180.02562 * 18 17 16 20 20 S 1.75887 * 109.59565 * 359.75483 * 19 18 17 21 21 C 1.33391 * 122.54338 * 90.02238 * 17 16 15 22 22 C 1.50704 * 109.46934 * 299.99607 * 9 7 2 23 23 C 1.34510 * 125.78884 * 100.00199 * 22 9 7 24 24 C 1.41390 * 106.84330 * 179.97438 * 23 22 9 25 25 C 1.34515 * 106.83507 * 0.02562 * 24 23 22 26 26 O 1.34304 * 125.78747 * 279.69502 * 22 9 7 27 27 H 0.96997 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47250 * 59.99680 * 14 12 11 29 29 H 1.09007 * 109.47222 * 299.99932 * 14 12 11 30 30 H 1.08994 * 109.46921 * 60.00192 * 15 14 12 31 31 H 1.08994 * 109.47207 * 299.99884 * 15 14 12 32 32 H 1.08994 * 109.47301 * 60.00348 * 16 15 14 33 33 H 1.09003 * 109.46866 * 299.99784 * 16 15 14 34 34 H 1.08001 * 122.53963 * 0.04211 * 18 17 16 35 35 H 1.07998 * 125.20164 * 180.02562 * 19 18 17 36 36 H 1.08002 * 125.19887 * 359.95301 * 21 17 16 37 37 H 1.08001 * 126.58202 * 0.03502 * 23 22 9 38 38 H 1.07995 * 126.58119 * 179.97438 * 24 23 22 39 39 H 1.08002 * 125.78572 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 2.1947 -3.6028 0.0005 12 6 1.8034 -4.7390 -0.5974 13 8 0.7085 -4.8092 -1.1037 14 6 2.7297 -5.9271 -0.6374 15 6 2.0454 -7.0828 -1.3703 16 6 2.9857 -8.2892 -1.4103 17 6 2.3120 -9.4273 -2.1327 18 6 1.5357 -10.3686 -1.4790 19 6 1.0124 -11.3100 -2.2658 20 16 1.4977 -11.0231 -3.9319 21 6 2.4189 -9.6042 -3.4505 22 6 0.3843 -2.5787 1.2308 23 6 -0.9358 -2.3256 1.2806 24 6 -1.3400 -2.5208 2.6213 25 6 -0.2425 -2.8809 3.3107 26 8 0.7978 -2.9200 2.4622 27 1 -0.4849 0.8400 0.0004 28 1 2.9705 -6.2345 0.3803 29 1 3.6462 -5.6558 -1.1614 30 1 1.8044 -6.7756 -2.3879 31 1 1.1292 -7.3539 -0.8459 32 1 3.2263 -8.5961 -0.3925 33 1 3.9022 -8.0183 -1.9345 34 1 1.3664 -10.3426 -0.4126 35 1 0.3829 -12.1215 -1.9317 36 1 2.9813 -8.9703 -4.1201 37 1 -1.5663 -2.0309 0.4547 38 1 -2.3382 -2.4025 3.0163 39 1 -0.2053 -3.1057 4.3664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520425193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:31 Heat of formation + Delta-G solvation = -50.914872 kcal Electronic energy + Delta-G solvation = -23580.995560 eV Core-core repulsion = 19967.924547 eV Total energy + Delta-G solvation = -3613.071013 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.34696 -39.60289 -38.56571 -35.91011 -34.09401 -33.26666 -31.71137 -30.36482 -29.57262 -27.68233 -26.57676 -24.05820 -22.95440 -21.85518 -20.62418 -20.04359 -19.24575 -18.85506 -17.79453 -17.14581 -16.63605 -16.47351 -15.75726 -15.52068 -15.13700 -14.70051 -14.43480 -14.28765 -13.68267 -13.32093 -13.16804 -12.79674 -12.74866 -12.53284 -12.10929 -11.83492 -11.77507 -11.65534 -11.55385 -11.43972 -11.20231 -11.13107 -10.95688 -10.84648 -10.65854 -10.37773 -10.09285 -9.66472 -9.39334 -8.95725 -8.82260 -8.65072 -8.51921 -7.26011 -6.21764 -4.39650 0.85451 1.51177 1.82966 2.54258 2.86975 2.94689 3.21017 3.26430 3.30280 3.56496 3.95682 4.18780 4.28057 4.68394 4.79130 5.00771 5.05904 5.11217 5.23028 5.34877 5.37359 5.50033 5.64806 5.72645 5.76754 5.85994 5.91658 6.06679 6.07248 6.26156 6.36187 6.38231 6.39693 6.73548 6.98568 7.15065 7.22992 7.40782 7.69402 7.70217 7.86944 8.36131 8.52892 8.79310 9.27290 10.77102 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.002619 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.339901 B =10689.186384 C =11466.168748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.531 4.531 8 H 0.077 0.923 9 C 0.297 3.703 10 H 0.078 0.922 11 O -0.350 6.350 12 C 0.451 3.549 13 O -0.517 6.517 14 C -0.115 4.115 15 C -0.102 4.102 16 C -0.061 4.061 17 C -0.096 4.096 18 C -0.128 4.128 19 C -0.213 4.213 20 S 0.080 5.920 21 C -0.210 4.210 22 C 0.027 3.973 23 C -0.179 4.179 24 C -0.217 4.217 25 C -0.089 4.089 26 O -0.177 6.177 27 H 0.269 0.731 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.163 0.837 36 H 0.164 0.836 37 H 0.141 0.859 38 H 0.131 0.869 39 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.826 -18.203 -2.332 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.096 0.904 9 C 0.244 3.756 10 H 0.096 0.904 11 O -0.267 6.267 12 C 0.294 3.706 13 O -0.407 6.407 14 C -0.153 4.153 15 C -0.139 4.139 16 C -0.101 4.101 17 C -0.108 4.108 18 C -0.158 4.158 19 C -0.348 4.348 20 S 0.344 5.656 21 C -0.345 4.345 22 C -0.024 4.024 23 C -0.198 4.198 24 C -0.237 4.237 25 C -0.157 4.157 26 O -0.074 6.074 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.119 0.881 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.159 0.841 35 H 0.180 0.820 36 H 0.182 0.818 37 H 0.158 0.842 38 H 0.148 0.852 39 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 3.318 -18.873 -3.797 19.535 hybrid contribution 0.023 1.884 1.544 2.436 sum 3.341 -16.990 -2.253 17.461 Atomic orbital electron populations 1.70034 1.05922 1.27656 1.46603 1.24955 0.95136 0.99576 0.94033 0.86234 0.79700 0.81662 0.78384 1.20161 1.20893 1.19438 1.20895 0.94136 0.87624 1.54188 0.90444 1.19159 0.85749 0.81926 0.88764 0.90440 1.86547 1.48410 1.22152 1.69541 1.23534 0.86887 0.85083 0.75123 1.90620 1.22830 1.83411 1.43800 1.21355 0.98654 0.91428 1.03815 1.21377 0.98492 0.92258 1.01817 1.20365 0.97775 0.91799 1.00153 1.18966 1.00367 0.98259 0.93216 1.20158 0.99343 0.94926 1.01419 1.25579 1.08106 1.05257 0.95893 1.84245 1.47510 1.24918 1.08956 1.25486 1.07594 1.02581 0.98832 1.23549 0.94154 1.00088 0.84592 1.21208 0.94813 1.07003 0.96824 1.21693 0.98903 1.07979 0.95129 1.23600 0.86125 1.10341 0.95595 1.83990 1.36693 1.68456 1.18221 0.92164 0.88158 0.88057 0.90849 0.90868 0.90566 0.90664 0.84137 0.81991 0.81838 0.84162 0.85151 0.79887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.07 10.95 55.43 0.61 -23.46 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 3 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.53 -14.69 8.89 -34.44 -0.31 -14.99 16 8 H 0.08 2.10 7.81 -52.49 -0.41 1.69 16 9 C 0.30 7.90 2.42 -29.03 -0.07 7.83 16 10 H 0.08 2.21 7.15 -51.93 -0.37 1.83 16 11 O -0.35 -8.23 9.85 -41.33 -0.41 -8.63 16 12 C 0.45 9.08 7.92 36.00 0.29 9.37 16 13 O -0.52 -11.85 15.20 -18.76 -0.29 -12.14 16 14 C -0.11 -1.55 5.81 -27.88 -0.16 -1.71 16 15 C -0.10 -1.25 4.49 -26.73 -0.12 -1.37 16 16 C -0.06 -0.57 5.47 -27.88 -0.15 -0.72 16 17 C -0.10 -0.97 5.06 -106.25 -0.54 -1.51 16 18 C -0.13 -1.24 9.98 -41.21 -0.41 -1.65 16 19 C -0.21 -1.92 11.23 29.04 0.33 -1.59 16 20 S 0.08 0.73 23.34 -107.50 -2.51 -1.78 16 21 C -0.21 -2.05 10.98 29.04 0.32 -1.73 16 22 C 0.03 0.71 5.53 -35.62 -0.20 0.51 16 23 C -0.18 -4.49 9.17 -39.70 -0.36 -4.86 16 24 C -0.22 -4.69 10.91 -39.70 -0.43 -5.12 16 25 C -0.09 -1.84 12.09 29.42 0.36 -1.49 16 26 O -0.18 -4.36 10.65 4.36 0.05 -4.31 16 27 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 28 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.10 1.16 8.14 -51.92 -0.42 0.73 16 30 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 31 H 0.07 1.00 8.10 -51.93 -0.42 0.58 16 32 H 0.08 0.63 8.13 -51.93 -0.42 0.20 16 33 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 34 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.16 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.14 3.61 7.87 -52.49 -0.41 3.19 16 38 H 0.13 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.18 2.85 8.06 -52.49 -0.42 2.43 16 LS Contribution 356.24 15.07 5.37 5.37 Total: -1.00 -31.92 356.24 -8.74 -40.65 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.97 Total: 5.70 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.56 Total: -17.27 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.61 Total: -23.46 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.65 Total: -25.09 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -2.51 Total: -1.78 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.92 -8.74 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.260 kcal (2) G-P(sol) polarization free energy of solvation -31.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds