Wall clock time and date at job start Tue Mar 31 2020 12:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48500 * 109.46754 * 269.99993 * 3 2 1 5 5 H 1.48500 * 109.47183 * 29.99690 * 3 2 1 6 6 H 1.48502 * 109.47511 * 150.00017 * 3 2 1 7 7 C 1.37881 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99883 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99912 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47144 * 59.99415 * 9 7 2 11 11 O 1.45196 * 109.47202 * 179.97438 * 9 7 2 12 12 C 1.34231 * 117.00269 * 209.99937 * 11 9 7 13 13 O 1.20832 * 119.99399 * 359.97438 * 12 11 9 14 14 C 1.50693 * 120.00288 * 179.97438 * 12 11 9 15 15 C 1.53003 * 109.47069 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.46776 * 180.02562 * 15 14 12 17 17 C 1.50700 * 109.46909 * 180.02562 * 16 15 14 18 18 C 1.38423 * 122.53613 * 270.00211 * 17 16 15 19 19 C 1.33390 * 114.91977 * 180.02562 * 18 17 16 20 20 S 1.75887 * 109.59565 * 359.75483 * 19 18 17 21 21 C 1.33391 * 122.54338 * 90.02238 * 17 16 15 22 22 C 1.50704 * 109.46934 * 299.99607 * 9 7 2 23 23 C 1.34510 * 125.78884 * 100.00199 * 22 9 7 24 24 C 1.41390 * 106.84330 * 179.97438 * 23 22 9 25 25 C 1.34515 * 106.83507 * 0.02562 * 24 23 22 26 26 O 1.34304 * 125.78747 * 279.69502 * 22 9 7 27 27 H 0.96997 * 119.99665 * 359.97438 * 1 2 3 28 28 H 1.09005 * 109.47250 * 59.99680 * 14 12 11 29 29 H 1.09007 * 109.47222 * 299.99932 * 14 12 11 30 30 H 1.08994 * 109.46921 * 60.00192 * 15 14 12 31 31 H 1.08994 * 109.47207 * 299.99884 * 15 14 12 32 32 H 1.08994 * 109.47301 * 60.00348 * 16 15 14 33 33 H 1.09003 * 109.46866 * 299.99784 * 16 15 14 34 34 H 1.08001 * 122.53963 * 0.04211 * 18 17 16 35 35 H 1.07998 * 125.20164 * 180.02562 * 19 18 17 36 36 H 1.08002 * 125.19887 * 359.95301 * 21 17 16 37 37 H 1.08001 * 126.58202 * 0.03502 * 23 22 9 38 38 H 1.07995 * 126.58119 * 179.97438 * 24 23 22 39 39 H 1.08002 * 125.78572 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8896 11 8 2.1947 -3.6028 0.0005 12 6 1.8034 -4.7390 -0.5974 13 8 0.7085 -4.8092 -1.1037 14 6 2.7297 -5.9271 -0.6374 15 6 2.0454 -7.0828 -1.3703 16 6 2.9857 -8.2892 -1.4103 17 6 2.3120 -9.4273 -2.1327 18 6 1.5357 -10.3686 -1.4790 19 6 1.0124 -11.3100 -2.2658 20 16 1.4977 -11.0231 -3.9319 21 6 2.4189 -9.6042 -3.4505 22 6 0.3843 -2.5787 1.2308 23 6 -0.9358 -2.3256 1.2806 24 6 -1.3400 -2.5208 2.6213 25 6 -0.2425 -2.8809 3.3107 26 8 0.7978 -2.9200 2.4622 27 1 -0.4849 0.8400 0.0004 28 1 2.9705 -6.2345 0.3803 29 1 3.6462 -5.6558 -1.1614 30 1 1.8044 -6.7756 -2.3879 31 1 1.1292 -7.3539 -0.8459 32 1 3.2263 -8.5961 -0.3925 33 1 3.9022 -8.0183 -1.9345 34 1 1.3664 -10.3426 -0.4126 35 1 0.3829 -12.1215 -1.9317 36 1 2.9813 -8.9703 -4.1201 37 1 -1.5663 -2.0309 0.4547 38 1 -2.3382 -2.4025 3.0163 39 1 -0.2053 -3.1057 4.3664 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520425193.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:30 Heat of formation + Delta-G solvation = -67.342171 kcal Electronic energy + Delta-G solvation = -23581.707901 eV Core-core repulsion = 19967.924547 eV Total energy + Delta-G solvation = -3613.783354 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.18020 -41.26642 -39.34274 -37.64588 -35.30721 -35.13233 -33.55404 -31.75903 -30.92790 -28.82977 -28.30523 -25.41942 -24.38954 -22.93009 -22.37150 -21.63576 -20.96861 -19.62316 -19.07245 -18.53202 -18.42855 -18.09015 -17.21060 -17.10653 -16.55919 -16.33962 -16.08289 -15.51043 -14.83763 -14.61711 -14.46720 -13.97857 -13.86921 -13.66341 -13.52158 -13.47407 -13.29867 -13.18789 -13.04492 -12.81190 -12.62671 -12.61532 -12.34111 -12.21066 -12.02569 -11.65471 -11.53889 -11.39144 -11.29220 -10.80707 -10.52751 -9.67346 -9.24892 -9.12426 -8.24582 -6.53359 0.13751 0.81467 1.09333 1.12267 1.33482 1.39380 1.42152 1.52660 1.77163 1.93838 2.14210 2.40977 2.43091 3.00712 3.76845 3.89925 4.00806 4.18017 4.21207 4.31913 4.39106 4.48479 4.53581 4.58763 4.65292 4.67963 4.76115 4.79447 4.94346 5.06846 5.14917 5.21737 5.31899 5.36626 5.42711 5.46120 5.58372 5.65238 5.68322 5.83666 5.98312 6.48182 6.58681 6.94696 7.19234 8.72473 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.002619 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.339901 B =10689.186384 C =11466.168748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.023 3.977 3 Si 0.981 3.019 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.557 4.557 8 H 0.075 0.925 9 C 0.300 3.700 10 H 0.040 0.960 11 O -0.360 6.360 12 C 0.441 3.559 13 O -0.553 6.553 14 C -0.102 4.102 15 C -0.093 4.093 16 C -0.051 4.051 17 C -0.110 4.110 18 C -0.144 4.144 19 C -0.216 4.216 20 S 0.080 5.920 21 C -0.222 4.222 22 C -0.003 4.003 23 C -0.195 4.195 24 C -0.229 4.229 25 C -0.069 4.069 26 O -0.193 6.193 27 H 0.270 0.730 28 H 0.128 0.872 29 H 0.131 0.869 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.152 0.848 35 H 0.182 0.818 36 H 0.175 0.825 37 H 0.120 0.880 38 H 0.165 0.835 39 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.005 -18.846 -0.705 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.594 4.594 8 H 0.093 0.907 9 C 0.246 3.754 10 H 0.057 0.943 11 O -0.276 6.276 12 C 0.286 3.714 13 O -0.444 6.444 14 C -0.139 4.139 15 C -0.131 4.131 16 C -0.091 4.091 17 C -0.122 4.122 18 C -0.174 4.174 19 C -0.351 4.351 20 S 0.343 5.657 21 C -0.357 4.357 22 C -0.053 4.053 23 C -0.214 4.214 24 C -0.248 4.248 25 C -0.135 4.135 26 O -0.091 6.091 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.148 0.852 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.170 0.830 35 H 0.200 0.800 36 H 0.192 0.808 37 H 0.138 0.862 38 H 0.183 0.817 39 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.503 -19.544 -2.179 20.174 hybrid contribution -0.433 1.982 1.039 2.279 sum 4.070 -17.562 -1.141 18.063 Atomic orbital electron populations 1.70173 1.07270 1.28456 1.46792 1.25860 0.96038 1.02903 0.93256 0.85203 0.78459 0.77078 0.78847 1.19111 1.20403 1.18770 1.21170 0.94204 0.88781 1.55202 0.90659 1.18706 0.85728 0.82925 0.88053 0.94271 1.86538 1.47922 1.22755 1.70392 1.24946 0.87528 0.85390 0.73523 1.90597 1.24863 1.83801 1.45181 1.21559 0.97914 0.88392 1.06040 1.21297 0.98559 0.93038 1.00252 1.20306 0.97337 0.89989 1.01472 1.19154 1.00835 0.98728 0.93497 1.20395 0.99635 0.95153 1.02238 1.25899 1.07975 1.05635 0.95629 1.84229 1.47365 1.24728 1.09335 1.25749 1.07850 1.02992 0.99151 1.23328 0.94442 1.02305 0.85237 1.21279 0.94674 1.07216 0.98276 1.22045 1.01076 1.08263 0.93385 1.24692 0.84571 1.07123 0.97153 1.83960 1.38219 1.68823 1.18048 0.92074 0.85448 0.85154 0.92588 0.92692 0.88820 0.88935 0.83019 0.80049 0.80803 0.86230 0.81723 0.74266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.94 10.95 21.45 0.23 -50.70 16 2 C 0.02 1.24 5.30 84.66 0.45 1.69 16 3 Si 0.98 43.01 29.54 68.60 2.03 45.03 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.56 -31.73 8.89 25.60 0.23 -31.51 16 8 H 0.08 4.18 7.81 -2.91 -0.02 4.16 16 9 C 0.30 16.70 2.42 29.10 0.07 16.77 16 10 H 0.04 2.43 7.15 -2.39 -0.02 2.41 16 11 O -0.36 -17.42 9.85 -49.45 -0.49 -17.91 16 12 C 0.44 18.22 7.92 71.23 0.56 18.78 16 13 O -0.55 -26.73 15.20 21.95 0.33 -26.39 16 14 C -0.10 -2.62 5.81 29.85 0.17 -2.45 16 15 C -0.09 -2.23 4.49 30.60 0.14 -2.09 16 16 C -0.05 -0.86 5.47 29.85 0.16 -0.69 16 17 C -0.11 -2.09 5.06 -20.92 -0.11 -2.20 16 18 C -0.14 -2.61 9.98 21.22 0.21 -2.40 16 19 C -0.22 -3.63 11.23 66.72 0.75 -2.88 16 20 S 0.08 1.39 23.34 -56.49 -1.32 0.07 16 21 C -0.22 -4.13 10.98 66.72 0.73 -3.40 16 22 C 0.00 -0.14 5.53 24.83 0.14 0.00 16 23 C -0.19 -10.04 9.17 22.19 0.20 -9.83 16 24 C -0.23 -9.53 10.91 22.19 0.24 -9.29 16 25 C -0.07 -2.68 12.09 66.97 0.81 -1.87 16 26 O -0.19 -9.42 10.65 -1.27 -0.01 -9.43 16 27 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 28 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 29 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 30 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 31 H 0.05 1.50 8.10 -2.39 -0.02 1.48 16 32 H 0.09 1.25 8.13 -2.39 -0.02 1.24 16 33 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.18 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 37 H 0.12 6.53 7.87 -2.91 -0.02 6.51 16 38 H 0.17 5.56 8.06 -2.91 -0.02 5.53 16 39 H 0.24 6.23 8.06 -2.91 -0.02 6.21 16 Total: -1.00 -73.06 356.24 6.59 -66.46 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 1.05 Total: 24.23 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 4.77 Total: -31.36 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.23 Total: -50.70 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.17 Total: -53.74 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.32 Total: 0.07 kcal Total: -73.06 6.59 -66.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520425193.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.878 kcal (2) G-P(sol) polarization free energy of solvation -73.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds