Wall clock time and date at job start Tue Mar 31 2020 12:30:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34780 * 120.00165 * 2 1
4 4 O 1.21277 * 119.99993 * 185.08157 * 3 2 1
5 5 C 1.50696 * 119.99771 * 5.07737 * 3 2 1
6 6 S 1.80997 * 109.47021 * 180.02562 * 5 3 2
7 7 C 1.76202 * 99.99997 * 179.97438 * 6 5 3
8 8 H 1.07995 * 120.00218 * 0.02562 * 7 6 5
9 9 C 1.38802 * 120.00025 * 180.02562 * 7 6 5
10 10 N 1.31631 * 119.99817 * 0.02562 * 9 7 6
11 11 Si 1.86800 * 120.00026 * 180.02562 * 9 7 6
12 12 H 1.48494 * 109.47194 * 359.97438 * 11 9 7
13 13 H 1.48500 * 109.47259 * 119.99980 * 11 9 7
14 14 H 1.48499 * 109.46783 * 239.99744 * 11 9 7
15 15 C 1.39429 * 119.99890 * 179.97438 * 2 1 3
16 16 C 1.38848 * 119.64466 * 265.03524 * 15 2 1
17 17 C 1.39451 * 118.96636 * 179.97438 * 16 15 2
18 18 C 1.48457 * 120.86716 * 180.02562 * 17 16 15
19 19 N 1.34051 * 126.67433 * 359.96892 * 18 17 16
20 20 N 1.28976 * 107.26887 * 180.02562 * 19 18 17
21 21 N 1.28733 * 108.94769 * 0.02562 * 20 19 18
22 22 H 0.96999 * 125.34142 * 180.02562 * 21 20 19
23 23 N 1.28869 * 109.31239 * 359.97438 * 21 20 19
24 24 C 1.39896 * 118.26850 * 0.26683 * 17 16 15
25 25 C 1.37872 * 119.17568 * 359.46632 * 24 17 16
26 26 N 1.31977 * 120.96535 * 0.55088 * 25 24 17
27 27 H 1.09005 * 109.47042 * 270.00487 * 1 2 3
28 28 H 1.09001 * 109.47106 * 29.99791 * 1 2 3
29 29 H 1.08996 * 109.47185 * 150.00392 * 1 2 3
30 30 H 1.09001 * 109.47564 * 300.00052 * 5 3 2
31 31 H 1.08991 * 109.47212 * 60.00162 * 5 3 2
32 32 H 0.97004 * 119.99905 * 180.02562 * 10 9 7
33 33 H 1.08003 * 120.51349 * 359.95668 * 16 15 2
34 34 H 1.08001 * 120.41574 * 179.72696 * 24 17 16
35 35 H 1.07998 * 119.51565 * 180.27118 * 25 24 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3481 1.1692 -0.0930
5 6 1.3898 2.4697 0.1155
6 16 2.5648 3.8461 0.0855
7 6 1.4503 5.2031 0.2309
8 1 0.3879 5.0238 0.3052
9 6 1.9377 6.5026 0.2499
10 7 3.2326 6.7212 0.1587
11 14 0.7562 7.9411 0.4047
12 1 -0.6359 7.4314 0.4900
13 1 1.0765 8.7150 1.6310
14 1 0.8888 8.8207 -0.7844
15 6 2.1621 -1.2075 0.0005
16 6 2.5959 -1.7495 1.2030
17 6 3.2914 -2.9581 1.1871
18 6 3.7740 -3.5757 2.4479
19 7 3.6191 -3.0903 3.6878
20 7 4.1805 -3.9224 4.4977
21 7 4.6752 -4.8977 3.8184
22 1 5.1502 -5.6568 4.1910
23 7 4.4391 -4.7076 2.5659
24 6 3.5269 -3.5708 -0.0482
25 6 3.0577 -2.9698 -1.1969
26 7 2.4028 -1.8251 -1.1455
27 1 -0.3633 0.0001 1.0277
28 1 -0.3633 0.8900 -0.5138
29 1 -0.3633 -0.8900 -0.5138
30 1 0.6969 2.5658 -0.7204
31 1 0.8334 2.4870 1.0525
32 1 3.5733 7.6293 0.1724
33 1 2.3980 -1.2428 2.1360
34 1 4.0659 -4.5053 -0.1012
35 1 3.2326 -3.4403 -2.1532
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001578879487.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:28
Heat of formation + Delta-G solvation = 145.701177 kcal
Electronic energy + Delta-G solvation = -22876.546064 eV
Core-core repulsion = 19233.046121 eV
Total energy + Delta-G solvation = -3643.499943 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.080 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-44.85397 -40.84970 -38.97232 -35.59341 -34.92604 -34.22167 -32.41527 -31.82605
-31.27996 -28.89420 -26.82895 -25.54638 -25.38415 -25.09759 -23.41847 -22.42669
-20.09322 -19.42883 -17.77250 -17.53189 -17.45139 -16.90555 -16.42376 -16.14645
-15.31489 -14.90346 -14.79008 -14.55195 -14.07089 -13.99901 -13.96290 -13.14504
-13.10331 -12.76417 -12.62248 -12.46712 -12.22920 -11.97349 -11.87027 -11.61080
-11.50180 -11.05632 -11.00825 -10.75692 -10.05131 -9.80707 -9.68298 -9.56229
-9.26552 -9.06014 -8.82920 -8.22181 -6.49601 -6.20392 -3.91233 0.26466
0.78309 0.84108 1.82268 2.02189 2.63623 2.91075 3.20673 3.23317
3.26732 3.32348 3.49035 3.54446 3.77018 4.20940 4.39266 4.64992
4.76291 4.79274 4.84078 5.00122 5.05991 5.14658 5.16228 5.38910
5.44473 5.58027 5.62188 5.68341 5.79741 5.89096 5.96576 6.06003
6.12390 6.78318 7.30873 7.61475 7.71653 7.74776 8.36795 8.44397
9.25016 10.87103
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.020282 B = 0.002683 C = 0.002519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1380.192163 B =10435.121241 C =11110.737214
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.086 3.914
2 N -0.579 5.579
3 C 0.542 3.458
4 O -0.500 6.500
5 C -0.147 4.147
6 S -0.060 6.060
7 C -0.533 4.533
8 H 0.074 0.926
9 C 0.073 3.927
10 N -0.867 5.867
11 Si 0.919 3.081
12 H -0.271 1.271
13 H -0.280 1.280
14 H -0.280 1.280
15 C 0.366 3.634
16 C -0.111 4.111
17 C 0.033 3.967
18 C 0.217 3.783
19 N -0.257 5.257
20 N -0.044 5.044
21 N -0.226 5.226
22 H 0.477 0.523
23 N -0.285 5.285
24 C -0.138 4.138
25 C 0.116 3.884
26 N -0.469 5.469
27 H 0.063 0.937
28 H 0.084 0.916
29 H 0.071 0.929
30 H 0.095 0.905
31 H 0.095 0.905
32 H 0.268 0.732
33 H 0.151 0.849
34 H 0.148 0.852
35 H 0.168 0.832
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.523 -26.631 3.502 26.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 N -0.315 5.315
3 C 0.331 3.669
4 O -0.371 6.371
5 C -0.297 4.297
6 S 0.166 5.834
7 C -0.682 4.682
8 H 0.092 0.908
9 C -0.136 4.136
10 N -0.503 5.503
11 Si 0.746 3.254
12 H -0.196 1.196
13 H -0.206 1.206
14 H -0.206 1.206
15 C 0.140 3.860
16 C -0.135 4.135
17 C 0.022 3.978
18 C -0.063 4.063
19 N -0.130 5.130
20 N -0.039 5.039
21 N -0.072 5.072
22 H 0.332 0.668
23 N -0.137 5.137
24 C -0.160 4.160
25 C -0.042 4.042
26 N -0.181 5.181
27 H 0.081 0.919
28 H 0.102 0.898
29 H 0.090 0.910
30 H 0.113 0.887
31 H 0.113 0.887
32 H 0.078 0.922
33 H 0.169 0.831
34 H 0.166 0.834
35 H 0.185 0.815
Dipole moment (debyes) X Y Z Total
from point charges -0.801 -26.093 3.245 26.306
hybrid contribution -1.552 0.035 0.751 1.725
sum -2.353 -26.058 3.995 26.467
Atomic orbital electron populations
1.21874 0.77459 1.03906 1.02381 1.45332 1.07223 1.02562 1.76412
1.20537 0.87901 0.83857 0.74630 1.90733 1.14053 1.86276 1.46008
1.23550 1.04659 0.96308 1.05193 1.85467 1.08382 0.93439 1.96062
1.22890 0.94730 0.92204 1.58346 0.90753 1.25001 0.95667 0.98391
0.94568 1.70031 1.11897 1.21561 1.46771 0.86105 0.80322 0.81080
0.77916 1.19571 1.20582 1.20593 1.17879 0.93051 0.87533 0.87549
1.22161 0.96886 0.94266 1.00237 1.17338 0.98373 0.94206 0.87911
1.23430 0.98763 0.90164 0.93921 1.76175 1.17125 1.20752 0.98936
1.78982 1.08341 0.94695 1.21907 1.47758 1.37374 1.19993 1.02042
0.66848 1.74893 1.18818 1.19167 1.00870 1.22190 1.00447 1.01698
0.91627 1.22556 0.93095 0.90133 0.98381 1.67327 1.12413 1.08675
1.29653 0.91868 0.89756 0.91034 0.88725 0.88653 0.92233 0.83127
0.83429 0.81459
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.94 10.19 59.85 0.61 1.55 16
2 N -0.58 -8.98 2.97 -122.81 -0.36 -9.35 16
3 C 0.54 10.73 7.65 -10.99 -0.08 10.64 16
4 O -0.50 -11.94 15.84 5.56 0.09 -11.85 16
5 C -0.15 -2.97 4.83 36.00 0.17 -2.80 16
6 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16
7 C -0.53 -15.11 9.50 30.94 0.29 -14.82 16
8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16
9 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16
10 N -0.87 -26.21 13.22 55.49 0.73 -25.48 16
11 Si 0.92 21.38 29.55 -169.99 -5.02 16.36 16
12 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16
13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16
15 C 0.37 5.45 5.44 -154.72 -0.84 4.61 16
16 C -0.11 -1.50 9.71 -38.90 -0.38 -1.88 16
17 C 0.03 0.39 5.91 -104.61 -0.62 -0.23 16
18 C 0.22 2.47 7.97 -156.31 -1.25 1.22 16
19 N -0.26 -3.19 12.32 32.15 0.40 -2.80 16
20 N -0.04 -0.44 13.47 60.35 0.81 0.37 16
21 N -0.23 -1.49 7.90 60.35 0.48 -1.02 16
22 H 0.48 0.70 8.96 -340.37 -3.05 -2.36 16
23 N -0.29 -2.56 12.17 32.17 0.39 -2.17 16
24 C -0.14 -1.31 9.79 -39.10 -0.38 -1.69 16
25 C 0.12 1.20 11.16 -17.62 -0.20 1.01 16
26 N -0.47 -6.67 10.38 -12.44 -0.13 -6.80 16
27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16
28 H 0.08 0.88 6.48 -51.93 -0.34 0.55 16
29 H 0.07 0.67 8.05 -51.93 -0.42 0.25 16
30 H 0.09 1.75 7.25 -51.91 -0.38 1.37 16
31 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16
32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16
33 H 0.15 2.03 7.97 -52.48 -0.42 1.61 16
34 H 0.15 1.00 7.97 -52.49 -0.42 0.58 16
35 H 0.17 1.13 8.06 -52.49 -0.42 0.71 16
LS Contribution 334.49 15.07 5.04 5.04
Total: -1.00 -38.32 334.49 -8.38 -46.70
By element:
Atomic # 1 Polarization: 1.04 SS G_CDS: -5.83 Total: -4.79 kcal
Atomic # 6 Polarization: 2.37 SS G_CDS: -2.76 Total: -0.39 kcal
Atomic # 7 Polarization: -49.54 SS G_CDS: 2.32 Total: -47.23 kcal
Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal
Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal
Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal
Total LS contribution 5.04 Total: 5.04 kcal
Total: -38.32 -8.38 -46.70 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001578879487.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 192.404 kcal
(2) G-P(sol) polarization free energy of solvation -38.318 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.086 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.703 kcal
(6) G-S(sol) free energy of system = (1) + (5) 145.701 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds