Wall clock time and date at job start Tue Mar 31 2020 12:30:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46497 * 1
3 3 C 1.34780 * 120.00165 * 2 1
4 4 O 1.21277 * 119.99993 * 185.08157 * 3 2 1
5 5 C 1.50696 * 119.99771 * 5.07737 * 3 2 1
6 6 S 1.80997 * 109.47021 * 180.02562 * 5 3 2
7 7 C 1.76202 * 99.99997 * 179.97438 * 6 5 3
8 8 H 1.07995 * 120.00218 * 0.02562 * 7 6 5
9 9 C 1.38802 * 120.00025 * 180.02562 * 7 6 5
10 10 N 1.31631 * 119.99817 * 0.02562 * 9 7 6
11 11 Si 1.86800 * 120.00026 * 180.02562 * 9 7 6
12 12 H 1.48494 * 109.47194 * 359.97438 * 11 9 7
13 13 H 1.48500 * 109.47259 * 119.99980 * 11 9 7
14 14 H 1.48499 * 109.46783 * 239.99744 * 11 9 7
15 15 C 1.39429 * 119.99890 * 179.97438 * 2 1 3
16 16 C 1.38848 * 119.64466 * 265.03524 * 15 2 1
17 17 C 1.39451 * 118.96636 * 179.97438 * 16 15 2
18 18 C 1.48457 * 120.86716 * 180.02562 * 17 16 15
19 19 N 1.34051 * 126.67433 * 359.96892 * 18 17 16
20 20 N 1.28976 * 107.26887 * 180.02562 * 19 18 17
21 21 N 1.28733 * 108.94769 * 0.02562 * 20 19 18
22 22 H 0.96999 * 125.34142 * 180.02562 * 21 20 19
23 23 N 1.28869 * 109.31239 * 359.97438 * 21 20 19
24 24 C 1.39896 * 118.26850 * 0.26683 * 17 16 15
25 25 C 1.37872 * 119.17568 * 359.46632 * 24 17 16
26 26 N 1.31977 * 120.96535 * 0.55088 * 25 24 17
27 27 H 1.09005 * 109.47042 * 270.00487 * 1 2 3
28 28 H 1.09001 * 109.47106 * 29.99791 * 1 2 3
29 29 H 1.08996 * 109.47185 * 150.00392 * 1 2 3
30 30 H 1.09001 * 109.47564 * 300.00052 * 5 3 2
31 31 H 1.08991 * 109.47212 * 60.00162 * 5 3 2
32 32 H 0.97004 * 119.99905 * 180.02562 * 10 9 7
33 33 H 1.08003 * 120.51349 * 359.95668 * 16 15 2
34 34 H 1.08001 * 120.41574 * 179.72696 * 24 17 16
35 35 H 1.07998 * 119.51565 * 180.27118 * 25 24 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1672 0.0000
4 8 3.3481 1.1692 -0.0930
5 6 1.3898 2.4697 0.1155
6 16 2.5648 3.8461 0.0855
7 6 1.4503 5.2031 0.2309
8 1 0.3879 5.0238 0.3052
9 6 1.9377 6.5026 0.2499
10 7 3.2326 6.7212 0.1587
11 14 0.7562 7.9411 0.4047
12 1 -0.6359 7.4314 0.4900
13 1 1.0765 8.7150 1.6310
14 1 0.8888 8.8207 -0.7844
15 6 2.1621 -1.2075 0.0005
16 6 2.5959 -1.7495 1.2030
17 6 3.2914 -2.9581 1.1871
18 6 3.7740 -3.5757 2.4479
19 7 3.6191 -3.0903 3.6878
20 7 4.1805 -3.9224 4.4977
21 7 4.6752 -4.8977 3.8184
22 1 5.1502 -5.6568 4.1910
23 7 4.4391 -4.7076 2.5659
24 6 3.5269 -3.5708 -0.0482
25 6 3.0577 -2.9698 -1.1969
26 7 2.4028 -1.8251 -1.1455
27 1 -0.3633 0.0001 1.0277
28 1 -0.3633 0.8900 -0.5138
29 1 -0.3633 -0.8900 -0.5138
30 1 0.6969 2.5658 -0.7204
31 1 0.8334 2.4870 1.0525
32 1 3.5733 7.6293 0.1724
33 1 2.3980 -1.2428 2.1360
34 1 4.0659 -4.5053 -0.1012
35 1 3.2326 -3.4403 -2.1532
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001578879487.mol2 35
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:30:28
Heat of formation + Delta-G solvation = 117.150237 kcal
Electronic energy + Delta-G solvation = -22877.784125 eV
Core-core repulsion = 19233.046121 eV
Total energy + Delta-G solvation = -3644.738004 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 320.080 amu
Computer time = 0.51 seconds
Orbital eigenvalues (eV)
-45.60897 -41.93368 -40.26069 -36.85472 -35.76444 -35.04681 -34.56657 -32.67638
-32.39011 -30.31613 -27.83654 -27.66268 -26.30507 -25.91056 -24.39086 -23.38593
-21.21654 -20.30326 -19.66621 -18.67814 -18.27603 -17.94806 -17.72374 -17.15405
-16.86403 -16.49805 -16.24923 -15.75575 -15.38393 -15.04574 -14.84197 -14.52656
-14.48331 -14.19883 -13.63605 -13.54403 -13.33794 -13.14399 -13.06381 -12.89778
-12.69368 -12.58552 -12.40294 -12.29953 -11.71559 -11.21081 -11.14060 -10.93953
-10.55064 -10.27809 -10.20337 -9.99217 -8.66823 -8.32986 -6.11509 -0.58126
-0.12494 0.05446 1.13305 1.20039 1.29114 1.40631 1.43724 1.45329
1.57823 1.87685 2.28127 2.42354 2.60133 2.96570 3.01598 3.23279
3.48873 3.74421 3.81027 3.89982 3.96648 4.02012 4.21271 4.27626
4.34400 4.47522 4.57640 4.60085 4.77143 4.86172 4.96098 5.20837
5.44689 5.52566 5.69492 6.01564 6.22459 6.76395 6.97658 7.01851
7.08486 8.76624
Molecular weight = 320.08amu
Principal moments of inertia in cm(-1)
A = 0.020282 B = 0.002683 C = 0.002519
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1380.192163 B =10435.121241 C =11110.737214
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.076 3.924
2 N -0.568 5.568
3 C 0.542 3.458
4 O -0.553 6.553
5 C -0.119 4.119
6 S -0.154 6.154
7 C -0.541 4.541
8 H 0.087 0.913
9 C 0.012 3.988
10 N -0.913 5.913
11 Si 1.000 3.000
12 H -0.254 1.254
13 H -0.275 1.275
14 H -0.275 1.275
15 C 0.337 3.663
16 C -0.124 4.124
17 C 0.029 3.971
18 C 0.203 3.797
19 N -0.293 5.293
20 N -0.053 5.053
21 N -0.192 5.192
22 H 0.498 0.502
23 N -0.272 5.272
24 C -0.117 4.117
25 C 0.119 3.881
26 N -0.497 5.497
27 H 0.084 0.916
28 H 0.090 0.910
29 H 0.090 0.910
30 H 0.116 0.884
31 H 0.118 0.882
32 H 0.271 0.729
33 H 0.140 0.860
34 H 0.182 0.818
35 H 0.207 0.793
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.011 -28.720 3.405 29.198
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.302 5.302
3 C 0.331 3.669
4 O -0.429 6.429
5 C -0.270 4.270
6 S 0.074 5.926
7 C -0.689 4.689
8 H 0.105 0.895
9 C -0.193 4.193
10 N -0.549 5.549
11 Si 0.822 3.178
12 H -0.178 1.178
13 H -0.200 1.200
14 H -0.200 1.200
15 C 0.113 3.887
16 C -0.148 4.148
17 C 0.017 3.983
18 C -0.077 4.077
19 N -0.165 5.165
20 N -0.047 5.047
21 N -0.044 5.044
22 H 0.358 0.642
23 N -0.125 5.125
24 C -0.139 4.139
25 C -0.039 4.039
26 N -0.209 5.209
27 H 0.102 0.898
28 H 0.109 0.891
29 H 0.109 0.891
30 H 0.134 0.866
31 H 0.136 0.864
32 H 0.080 0.920
33 H 0.158 0.842
34 H 0.200 0.800
35 H 0.223 0.777
Dipole moment (debyes) X Y Z Total
from point charges -2.338 -28.235 3.176 28.509
hybrid contribution -1.038 0.369 0.798 1.361
sum -3.376 -27.866 3.974 28.349
Atomic orbital electron populations
1.22209 0.74823 1.05165 1.04204 1.45208 1.08804 1.01786 1.74381
1.20385 0.87225 0.84869 0.74432 1.90702 1.16119 1.87128 1.48949
1.23354 1.02753 0.93687 1.07203 1.85673 1.13082 0.97473 1.96407
1.23223 0.95070 0.92482 1.58105 0.89539 1.26154 0.97559 1.01722
0.93851 1.70201 1.14310 1.22376 1.48051 0.84880 0.78266 0.76685
0.77958 1.17770 1.20049 1.20040 1.17952 0.94760 0.87659 0.88378
1.22047 0.97999 0.95399 0.99386 1.17491 0.97971 0.93725 0.89097
1.23404 0.99760 0.90934 0.93611 1.76160 1.18517 1.22085 0.99716
1.78926 1.08787 0.95209 1.21827 1.47840 1.35599 1.19700 1.01292
0.64214 1.74846 1.18058 1.18072 1.01572 1.22551 0.98891 1.02175
0.90283 1.23254 0.91463 0.88882 1.00302 1.67302 1.13830 1.10367
1.29401 0.89754 0.89136 0.89147 0.86555 0.86439 0.92047 0.84214
0.80049 0.77655
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.56 10.19 127.77 1.30 2.86 16
2 N -0.57 -17.52 2.97 -660.84 -1.96 -19.49 16
3 C 0.54 21.88 7.65 87.66 0.67 22.55 16
4 O -0.55 -27.65 15.84 -3.02 -0.05 -27.69 16
5 C -0.12 -4.84 4.83 71.23 0.34 -4.50 16
6 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16
7 C -0.54 -30.89 9.50 67.96 0.65 -30.25 16
8 H 0.09 4.55 7.80 -2.91 -0.02 4.52 16
9 C 0.01 0.67 5.49 84.86 0.47 1.13 16
10 N -0.91 -56.58 13.22 21.65 0.29 -56.29 16
11 Si 1.00 43.75 29.55 68.60 2.03 45.78 16
12 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16
13 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16
14 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16
15 C 0.34 10.03 5.44 132.85 0.72 10.75 16
16 C -0.12 -3.39 9.71 22.71 0.22 -3.17 16
17 C 0.03 0.65 5.91 -19.86 -0.12 0.53 16
18 C 0.20 4.38 7.97 137.38 1.09 5.48 16
19 N -0.29 -7.19 12.32 -52.18 -0.64 -7.83 16
20 N -0.05 -0.99 13.47 37.02 0.50 -0.49 16
21 N -0.19 -2.14 7.90 37.02 0.29 -1.85 16
22 H 0.50 0.12 8.96 -347.54 -3.12 -3.00 16
23 N -0.27 -4.25 12.17 -52.13 -0.63 -4.89 16
24 C -0.12 -1.93 9.79 22.58 0.22 -1.71 16
25 C 0.12 2.18 11.16 84.58 0.94 3.12 16
26 N -0.50 -13.65 10.38 -193.27 -2.01 -15.66 16
27 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16
28 H 0.09 1.72 6.48 -2.39 -0.02 1.71 16
29 H 0.09 1.52 8.05 -2.39 -0.02 1.50 16
30 H 0.12 4.20 7.25 -2.40 -0.02 4.18 16
31 H 0.12 4.22 8.14 -2.40 -0.02 4.20 16
32 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
33 H 0.14 3.98 7.97 -2.91 -0.02 3.96 16
34 H 0.18 1.71 7.97 -2.91 -0.02 1.68 16
35 H 0.21 2.01 8.06 -2.91 -0.02 1.99 16
Total: -1.00 -87.36 334.49 1.21 -86.15
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: -1.95 Total: 5.29 kcal
Atomic # 6 Polarization: 0.29 SS G_CDS: 6.51 Total: 6.81 kcal
Atomic # 7 Polarization: -102.32 SS G_CDS: -4.17 Total: -106.49 kcal
Atomic # 8 Polarization: -27.65 SS G_CDS: -0.05 Total: -27.69 kcal
Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal
Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal
Total: -87.36 1.21 -86.15 kcal
The number of atoms in the molecule is 35
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001578879487.mol2 35
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 203.298 kcal
(2) G-P(sol) polarization free energy of solvation -87.361 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.937 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.213 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.148 kcal
(6) G-S(sol) free energy of system = (1) + (5) 117.150 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.51 seconds