Wall clock time and date at job start Tue Mar 31 2020 12:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86801 * 120.00338 * 2 1 4 4 H 1.48495 * 109.47137 * 269.99963 * 3 2 1 5 5 H 1.48501 * 109.46906 * 30.00307 * 3 2 1 6 6 H 1.48502 * 109.47161 * 149.99886 * 3 2 1 7 7 C 1.38815 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99961 * 204.94036 * 7 2 1 9 9 N 1.36932 * 120.00319 * 24.93721 * 7 2 1 10 10 C 1.46499 * 119.99848 * 9.66321 * 9 7 2 11 11 C 1.50698 * 109.47610 * 268.28184 * 10 9 7 12 12 O 1.20826 * 119.99546 * 359.97438 * 11 10 9 13 13 O 1.34223 * 120.00612 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00476 * 189.66435 * 9 7 2 15 15 C 1.50703 * 109.47117 * 89.99799 * 14 9 7 16 16 N 1.30115 * 124.95027 * 275.27502 * 15 14 9 17 17 C 1.35786 * 109.63974 * 180.14931 * 16 15 14 18 18 C 1.39735 * 133.59781 * 179.91627 * 17 16 15 19 19 C 1.36594 * 119.88829 * 179.70455 * 18 17 16 20 20 C 1.38776 * 120.66869 * 359.94903 * 19 18 17 21 21 N 1.48012 * 119.77693 * 180.02562 * 20 19 18 22 22 O 1.21809 * 120.00245 * 180.02562 * 21 20 19 23 23 O 1.21801 * 119.99998 * 0.02562 * 21 20 19 24 24 C 1.37855 * 120.45021 * 0.04757 * 20 19 18 25 25 C 1.38835 * 119.69203 * 359.97438 * 24 20 19 26 26 N 1.36030 * 124.94756 * 95.00222 * 15 14 9 27 27 H 0.97002 * 126.35256 * 359.97438 * 26 15 14 28 28 H 0.97001 * 119.99966 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47275 * 28.27917 * 10 9 7 30 30 H 1.09004 * 109.47231 * 148.27928 * 10 9 7 31 31 H 0.96703 * 117.00520 * 179.97438 * 13 11 10 32 32 H 1.09003 * 109.46730 * 330.00551 * 14 9 7 33 33 H 1.08995 * 109.47523 * 210.00198 * 14 9 7 34 34 H 1.08002 * 120.05780 * 359.65625 * 18 17 16 35 35 H 1.08001 * 119.66947 * 179.97438 * 19 18 17 36 36 H 1.08009 * 120.15537 * 179.97438 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0146 -1.2460 0.3939 9 7 1.4212 -2.3326 -0.5010 10 6 0.1513 -2.2376 -1.2252 11 6 -0.9921 -2.4182 -0.2603 12 8 -0.7690 -2.6073 0.9120 13 8 -2.2582 -2.3689 -0.7031 14 6 2.0610 -3.6369 -0.3123 15 6 1.5720 -4.2551 0.9722 16 7 2.0688 -4.0162 2.1508 17 6 1.3977 -4.7391 3.0840 18 6 1.5110 -4.8636 4.4712 19 6 0.6627 -5.6897 5.1520 20 6 -0.3155 -6.4093 4.4802 21 7 -1.2247 -7.2983 5.2377 22 8 -2.0844 -7.9321 4.6521 23 8 -1.1132 -7.3961 6.4466 24 6 -0.4459 -6.3020 3.1120 25 6 0.4078 -5.4676 2.4031 26 7 0.5436 -5.1402 1.0689 27 1 0.0052 -5.4784 0.3363 28 1 -0.4850 0.8401 0.0004 29 1 0.0756 -1.2589 -1.6992 30 1 0.1091 -3.0150 -1.9882 31 1 -2.9579 -2.4907 -0.0468 32 1 3.1423 -3.5077 -0.2647 33 1 1.8095 -4.2894 -1.1484 34 1 2.2687 -4.3082 5.0040 35 1 0.7537 -5.7837 6.2241 36 1 -1.2086 -6.8645 2.5939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610622501.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:49 Heat of formation + Delta-G solvation = -9.187566 kcal Electronic energy + Delta-G solvation = -27051.916897 eV Core-core repulsion = 22926.654852 eV Total energy + Delta-G solvation = -4125.262045 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.100 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.49986 -42.99741 -40.57513 -38.79026 -37.68601 -37.51879 -36.26809 -34.39394 -33.68104 -31.77742 -31.42107 -29.67541 -28.41392 -26.73276 -24.72671 -23.75417 -23.13632 -22.30357 -21.62332 -20.50790 -19.81575 -19.04071 -18.64587 -18.63658 -18.33465 -17.86421 -17.35744 -16.95960 -16.24547 -16.04088 -15.97921 -15.47431 -15.28619 -15.14474 -14.90686 -14.38136 -13.53055 -13.42924 -13.29527 -13.07808 -12.86750 -12.73108 -12.70046 -12.44613 -12.32963 -12.30578 -12.10607 -12.01425 -11.93089 -11.88413 -11.19832 -11.08949 -10.60355 -9.74931 -9.59371 -9.23575 -8.06090 -5.33121 -1.28623 -0.09093 0.30188 0.31894 1.46413 1.51319 1.56868 1.61041 1.87432 1.99387 2.41354 2.51457 2.74488 3.01984 3.20652 3.39300 3.52284 3.58338 3.75633 3.89297 4.06621 4.23367 4.40183 4.55366 4.64365 4.72360 4.81701 4.98682 5.04160 5.10191 5.17307 5.27222 5.49393 5.65327 6.07715 6.12421 6.29646 6.53759 6.82895 6.94022 7.53234 7.70436 7.96964 9.02185 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.003938 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.872128 B = 7108.044753 C = 7566.033502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.042 4.042 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.310 1.310 6 H -0.275 1.275 7 C -0.249 4.249 8 H 0.085 0.915 9 N -0.555 5.555 10 C 0.176 3.824 11 C 0.474 3.526 12 O -0.545 6.545 13 O -0.537 6.537 14 C 0.197 3.803 15 C 0.328 3.672 16 N -0.527 5.527 17 C 0.083 3.917 18 C -0.073 4.073 19 C -0.071 4.071 20 C -0.060 4.060 21 N 0.042 4.958 22 O -0.190 6.190 23 O -0.171 6.171 24 C -0.021 4.021 25 C 0.029 3.971 26 N -0.571 5.571 27 H 0.433 0.567 28 H 0.250 0.750 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.397 0.603 32 H 0.106 0.894 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.175 0.825 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.982 -11.259 -2.188 11.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.237 4.237 3 Si 0.796 3.204 4 H -0.202 1.202 5 H -0.238 1.238 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.103 0.897 9 N -0.273 5.273 10 C 0.048 3.952 11 C 0.315 3.685 12 O -0.433 6.433 13 O -0.348 6.348 14 C 0.068 3.932 15 C 0.059 3.941 16 N -0.248 5.248 17 C -0.040 4.040 18 C -0.093 4.093 19 C -0.093 4.093 20 C -0.146 4.146 21 N 0.556 4.444 22 O -0.400 6.400 23 O -0.386 6.386 24 C -0.043 4.043 25 C -0.083 4.083 26 N -0.182 5.182 27 H 0.274 0.726 28 H 0.059 0.941 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.255 0.745 32 H 0.124 0.876 33 H 0.140 0.860 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 2.386 -10.132 -2.388 10.680 hybrid contribution -1.867 0.428 0.821 2.084 sum 0.519 -9.704 -1.567 9.843 Atomic orbital electron populations 1.69983 1.06293 1.25876 1.54893 1.25406 0.95789 1.01176 1.01358 0.85265 0.77862 0.79487 0.77760 1.20173 1.23775 1.19975 1.19603 0.96981 0.85458 1.35810 0.89698 1.44773 1.20328 1.02005 1.60161 1.20748 0.79816 1.03888 0.90746 1.25447 0.83274 0.69375 0.90380 1.90572 1.85073 1.47184 1.20473 1.84566 1.17988 1.85669 1.46586 1.20494 0.99478 0.85571 0.87682 1.26235 0.84315 0.84927 0.98652 1.70573 1.31148 1.24415 0.98703 1.19963 0.93729 0.94759 0.95517 1.20123 1.00437 0.98872 0.89889 1.20465 0.92159 0.94318 1.02393 1.20535 0.99237 1.03136 0.91659 1.43582 1.00147 0.99536 1.01103 1.94501 1.29107 1.45035 1.71364 1.94493 1.76976 1.70425 0.96697 1.19603 0.97478 0.96125 0.91055 1.18432 1.00980 1.02548 0.86372 1.43052 1.30594 1.38220 1.06305 0.72570 0.94100 0.88314 0.87559 0.74545 0.87552 0.86007 0.81933 0.80811 0.81824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.54 9.11 21.65 0.20 -48.34 16 2 C -0.04 -2.08 4.88 84.86 0.41 -1.67 16 3 Si 0.97 41.77 29.62 68.60 2.03 43.80 16 4 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 5 H -0.31 -14.20 7.11 99.48 0.71 -13.49 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.25 -11.73 9.69 84.04 0.81 -10.92 16 8 H 0.09 4.05 7.93 -2.91 -0.02 4.02 16 9 N -0.56 -21.73 2.10 -710.68 -1.49 -23.22 16 10 C 0.18 6.53 5.57 85.63 0.48 7.00 16 11 C 0.47 19.07 6.47 71.24 0.46 19.53 16 12 O -0.54 -25.74 14.73 21.96 0.32 -25.42 16 13 O -0.54 -18.53 13.42 -51.35 -0.69 -19.21 16 14 C 0.20 5.86 6.33 85.63 0.54 6.40 16 15 C 0.33 11.02 6.19 137.92 0.85 11.87 16 16 N -0.53 -20.64 11.27 -179.97 -2.03 -22.67 16 17 C 0.08 2.95 7.23 39.45 0.29 3.23 16 18 C -0.07 -2.14 10.05 22.25 0.22 -1.92 16 19 C -0.07 -1.89 9.47 22.01 0.21 -1.68 16 20 C -0.06 -1.73 6.85 36.41 0.25 -1.48 16 21 N 0.04 1.29 4.45 -46.38 -0.21 1.08 16 22 O -0.19 -5.94 18.43 18.87 0.35 -5.59 16 23 O -0.17 -5.24 18.42 18.88 0.35 -4.89 16 24 C -0.02 -0.59 9.57 22.32 0.21 -0.37 16 25 C 0.03 0.90 7.31 38.86 0.28 1.18 16 26 N -0.57 -16.33 5.54 -179.23 -0.99 -17.32 16 27 H 0.43 9.35 8.96 -92.71 -0.83 8.52 16 28 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 29 H 0.10 4.23 6.26 -2.38 -0.01 4.21 16 30 H 0.11 2.82 7.92 -2.38 -0.02 2.80 16 31 H 0.40 11.17 9.10 -74.06 -0.67 10.49 16 32 H 0.11 3.05 8.03 -2.39 -0.02 3.03 16 33 H 0.12 2.38 7.91 -2.39 -0.02 2.36 16 34 H 0.16 4.11 8.06 -2.91 -0.02 4.08 16 35 H 0.17 3.69 7.58 -2.91 -0.02 3.67 16 36 H 0.16 3.86 7.60 -2.91 -0.02 3.84 16 Total: -1.00 -68.78 325.69 2.55 -66.23 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: -0.32 Total: 24.38 kcal Atomic # 6 Polarization: 26.15 SS G_CDS: 5.03 Total: 31.18 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -4.52 Total: -110.47 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: 0.33 Total: -55.12 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -68.78 2.55 -66.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610622501.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.041 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds