Wall clock time and date at job start Tue Mar 31 2020 12:37:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86803 * 119.99817 * 2 1
4 4 H 1.48499 * 109.46958 * 269.99726 * 3 2 1
5 5 H 1.48510 * 109.46825 * 29.99350 * 3 2 1
6 6 H 1.48494 * 109.47220 * 149.99469 * 3 2 1
7 7 C 1.38801 * 120.00391 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99614 * 0.02562 * 7 2 1
9 9 S 1.76199 * 119.99872 * 180.02562 * 7 2 1
10 10 C 1.81002 * 99.99841 * 180.02562 * 9 7 2
11 11 C 1.50693 * 109.47281 * 180.02562 * 10 9 7
12 12 O 1.21284 * 120.00198 * 0.27680 * 11 10 9
13 13 N 1.34779 * 120.00246 * 180.02562 * 11 10 9
14 14 C 1.46495 * 120.00220 * 180.02562 * 13 11 10
15 15 H 1.09007 * 110.85273 * 322.65815 * 14 13 11
16 16 C 1.54624 * 110.97543 * 86.45015 * 14 13 11
17 17 C 1.51277 * 104.19815 * 142.91539 * 16 14 13
18 18 O 1.21283 * 124.94205 * 163.71415 * 17 16 14
19 19 N 1.34412 * 110.11587 * 343.75323 * 17 16 14
20 20 C 1.39927 * 124.35305 * 179.56964 * 19 17 16
21 21 C 1.38877 * 120.06643 * 353.93582 * 20 19 17
22 22 C 1.38111 * 119.92485 * 179.78932 * 21 20 19
23 23 C 1.38280 * 120.07713 * 0.48843 * 22 21 20
24 24 C 1.38290 * 120.13536 * 359.74024 * 23 22 21
25 25 C 1.38111 * 120.07148 * 0.02661 * 24 23 22
26 26 C 1.46762 * 111.30494 * 359.58969 * 19 17 16
27 27 H 0.97001 * 120.00496 * 0.02562 * 1 2 3
28 28 H 1.09008 * 109.47143 * 59.99836 * 10 9 7
29 29 H 1.09005 * 109.47225 * 300.00425 * 10 9 7
30 30 H 0.96998 * 119.99566 * 359.97438 * 13 11 10
31 31 H 1.09000 * 110.49035 * 261.60363 * 16 14 13
32 32 H 1.09002 * 110.48076 * 24.10508 * 16 14 13
33 33 H 1.08001 * 120.03709 * 0.02797 * 21 20 19
34 34 H 1.08011 * 119.95857 * 180.23052 * 22 21 20
35 35 H 1.07996 * 119.93601 * 179.76738 * 23 22 21
36 36 H 1.08001 * 119.95833 * 179.97438 * 24 23 22
37 37 H 1.07999 * 120.03214 * 180.02562 * 25 24 23
38 38 H 1.09001 * 110.25111 * 258.02129 * 26 19 17
39 39 H 1.08993 * 110.24897 * 136.01591 * 26 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4475 2.6528 0.7000
6 1 3.5477 1.4403 0.7001
7 6 2.0104 -1.2020 0.0005
8 1 1.4704 -2.1373 0.0005
9 16 3.7724 -1.2018 0.0012
10 6 4.0868 -2.9844 0.0009
11 6 5.5732 -3.2323 0.0021
12 8 6.3442 -2.2960 0.0081
13 7 6.0459 -4.4944 0.0016
14 6 7.4909 -4.7354 0.0033
15 1 8.0077 -3.9999 -0.6133
16 6 8.0497 -4.7396 1.4450
17 6 9.1123 -5.8162 1.4280
18 8 9.9772 -5.9518 2.2673
19 7 8.9590 -6.6000 0.3469
20 6 9.7865 -7.6840 0.0338
21 6 10.9221 -7.9345 0.7930
22 6 11.7345 -9.0078 0.4840
23 6 11.4239 -9.8266 -0.5862
24 6 10.2964 -9.5770 -1.3470
25 6 9.4773 -8.5081 -1.0403
26 6 7.8123 -6.1726 -0.4633
27 1 -0.4851 0.8400 -0.0004
28 1 3.6442 -3.4313 -0.8894
29 1 3.6434 -3.4317 0.8907
30 1 5.4293 -5.2432 0.0009
31 1 8.4903 -3.7723 1.6862
32 1 7.2635 -4.9880 2.1580
33 1 11.1675 -7.2931 1.6265
34 1 12.6158 -9.2054 1.0764
35 1 12.0628 -10.6630 -0.8281
36 1 10.0567 -10.2181 -2.1825
37 1 8.5967 -8.3140 -1.6347
38 1 6.9591 -6.8269 -0.2842
39 1 8.0756 -6.1759 -1.5209
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000049279981.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:34
Heat of formation + Delta-G solvation = -32.737764 kcal
Electronic energy + Delta-G solvation = -23058.968572 eV
Core-core repulsion = 19478.978529 eV
Total energy + Delta-G solvation = -3579.990044 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.59545 -39.55299 -38.78231 -37.07132 -34.76288 -32.49687 -32.30937 -31.28474
-29.80811 -28.71627 -27.76167 -25.67230 -23.44655 -23.38039 -21.63815 -20.87146
-20.11692 -18.13631 -17.99217 -17.30622 -16.87538 -16.45726 -15.97912 -15.54740
-15.25047 -15.04077 -14.90815 -14.45661 -14.18225 -14.04938 -13.96652 -13.69081
-13.61278 -13.45401 -12.95884 -12.84867 -12.54470 -12.18861 -11.93244 -11.68466
-11.52269 -11.32456 -11.05600 -10.69853 -10.68511 -10.16514 -9.91633 -9.71685
-9.30602 -9.28862 -9.05333 -8.58194 -8.32551 -6.99265 -6.34128 -4.06975
0.89299 1.05014 2.18041 2.22968 2.62571 2.74444 3.12056 3.29027
3.45915 3.49882 3.52411 3.79336 3.98739 4.27870 4.35113 4.48939
4.55753 4.60771 4.64063 4.79153 4.90552 5.01554 5.04956 5.06188
5.12355 5.16761 5.21025 5.48597 5.53521 5.64660 5.68630 5.82634
5.90064 6.02054 6.15749 6.21319 6.22991 6.62295 6.71424 7.32390
7.61239 7.88630 8.25453 8.36116 9.11750 10.74944
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.038326 B = 0.002182 C = 0.002114
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.396028 B =12827.431653 C =13239.589705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.879 5.879
2 C 0.096 3.904
3 Si 0.857 3.143
4 H -0.267 1.267
5 H -0.274 1.274
6 H -0.235 1.235
7 C -0.523 4.523
8 H 0.089 0.911
9 S -0.140 6.140
10 C -0.125 4.125
11 C 0.535 3.465
12 O -0.511 6.511
13 N -0.728 5.728
14 C 0.142 3.858
15 H 0.116 0.884
16 C -0.168 4.168
17 C 0.523 3.477
18 O -0.506 6.506
19 N -0.559 5.559
20 C 0.167 3.833
21 C -0.157 4.157
22 C -0.092 4.092
23 C -0.148 4.148
24 C -0.093 4.093
25 C -0.159 4.159
26 C 0.092 3.908
27 H 0.271 0.729
28 H 0.099 0.901
29 H 0.100 0.900
30 H 0.404 0.596
31 H 0.117 0.883
32 H 0.116 0.884
33 H 0.154 0.846
34 H 0.126 0.874
35 H 0.122 0.878
36 H 0.126 0.874
37 H 0.126 0.874
38 H 0.088 0.912
39 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.955 -20.113 -2.340 27.736
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.515 5.515
2 C -0.113 4.113
3 Si 0.681 3.319
4 H -0.192 1.192
5 H -0.199 1.199
6 H -0.159 1.159
7 C -0.671 4.671
8 H 0.107 0.893
9 S 0.086 5.914
10 C -0.275 4.275
11 C 0.321 3.679
12 O -0.384 6.384
13 N -0.384 5.384
14 C 0.035 3.965
15 H 0.133 0.867
16 C -0.209 4.209
17 C 0.313 3.687
18 O -0.381 6.381
19 N -0.283 5.283
20 C 0.073 3.927
21 C -0.177 4.177
22 C -0.110 4.110
23 C -0.167 4.167
24 C -0.111 4.111
25 C -0.179 4.179
26 C -0.031 4.031
27 H 0.081 0.919
28 H 0.118 0.882
29 H 0.118 0.882
30 H 0.239 0.761
31 H 0.135 0.865
32 H 0.134 0.866
33 H 0.172 0.828
34 H 0.144 0.856
35 H 0.140 0.860
36 H 0.144 0.856
37 H 0.144 0.856
38 H 0.106 0.894
39 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 20.502 -18.465 -1.872 27.655
hybrid contribution -1.245 -0.779 -0.121 1.474
sum 19.257 -19.244 -1.993 27.297
Atomic orbital electron populations
1.69931 1.05915 1.27842 1.47824 1.24719 0.94463 0.98996 0.93138
0.86739 0.81882 0.83292 0.79948 1.19188 1.19902 1.15923 1.22295
0.88147 0.97559 1.59051 0.89324 1.84831 1.09459 0.99625 1.97448
1.23283 0.93420 1.04778 1.06064 1.20363 0.90809 0.81931 0.74759
1.90728 1.58695 1.42039 1.46960 1.45906 1.05681 1.08716 1.78089
1.21625 0.83280 0.95779 0.95778 0.86662 1.22909 0.98632 0.99870
0.99476 1.21085 0.85295 0.82475 0.79881 1.90634 1.35752 1.71822
1.39855 1.45801 1.28910 1.28492 1.25114 1.17823 0.91009 0.87914
0.95941 1.21659 0.93923 1.00035 1.02090 1.21083 0.99001 0.94136
0.96807 1.21150 0.98176 1.00666 0.96684 1.20946 0.94381 0.96549
0.99257 1.20798 1.01933 0.96853 0.98355 1.22470 0.88592 0.95291
0.96748 0.91879 0.88243 0.88213 0.76102 0.86470 0.86565 0.82832
0.85628 0.85996 0.85605 0.85615 0.89359 0.88434
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -25.91 13.97 55.49 0.78 -25.13 16
2 C 0.10 2.73 5.50 -17.43 -0.10 2.63 16
3 Si 0.86 21.21 27.74 -169.99 -4.72 16.49 16
4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
5 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16
6 H -0.24 -5.80 6.74 56.52 0.38 -5.42 16
7 C -0.52 -14.50 10.04 30.94 0.31 -14.19 16
8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16
9 S -0.14 -3.35 18.55 -107.50 -1.99 -5.34 16
10 C -0.12 -2.15 6.16 36.00 0.22 -1.92 16
11 C 0.54 8.04 7.85 -10.99 -0.09 7.96 16
12 O -0.51 -9.70 15.61 5.55 0.09 -9.61 16
13 N -0.73 -6.94 5.18 -52.23 -0.27 -7.22 16
14 C 0.14 1.23 3.42 -66.30 -0.23 1.00 16
15 H 0.12 1.13 7.73 -51.93 -0.40 0.73 16
16 C -0.17 -1.61 6.59 -26.75 -0.18 -1.79 16
17 C 0.52 5.84 7.92 -10.87 -0.09 5.75 16
18 O -0.51 -7.20 14.82 5.56 0.08 -7.11 16
19 N -0.56 -5.18 3.14 -112.27 -0.35 -5.53 16
20 C 0.17 1.64 6.60 -83.69 -0.55 1.08 16
21 C -0.16 -1.66 9.28 -39.39 -0.37 -2.02 16
22 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16
23 C -0.15 -1.08 10.04 -39.55 -0.40 -1.48 16
24 C -0.09 -0.65 10.04 -39.61 -0.40 -1.05 16
25 C -0.16 -1.24 9.40 -39.39 -0.37 -1.61 16
26 C 0.09 0.59 5.99 -3.12 -0.02 0.57 16
27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16
28 H 0.10 1.56 8.14 -51.91 -0.42 1.14 16
29 H 0.10 1.58 8.14 -51.91 -0.42 1.16 16
30 H 0.40 2.60 8.37 -40.82 -0.34 2.26 16
31 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16
32 H 0.12 1.05 8.08 -51.93 -0.42 0.63 16
33 H 0.15 1.87 5.27 -52.49 -0.28 1.60 16
34 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16
35 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16
36 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16
37 H 0.13 0.72 7.02 -52.49 -0.37 0.35 16
38 H 0.09 0.40 7.77 -51.93 -0.40 -0.01 16
39 H 0.10 0.49 7.70 -51.93 -0.40 0.09 16
LS Contribution 345.69 15.07 5.21 5.21
Total: -1.00 -34.88 345.69 -8.54 -43.42
By element:
Atomic # 1 Polarization: 5.79 SS G_CDS: -4.72 Total: 1.07 kcal
Atomic # 6 Polarization: -3.61 SS G_CDS: -2.64 Total: -6.25 kcal
Atomic # 7 Polarization: -38.03 SS G_CDS: 0.15 Total: -37.88 kcal
Atomic # 8 Polarization: -16.90 SS G_CDS: 0.17 Total: -16.73 kcal
Atomic # 14 Polarization: 21.21 SS G_CDS: -4.72 Total: 16.49 kcal
Atomic # 16 Polarization: -3.35 SS G_CDS: -1.99 Total: -5.34 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -34.88 -8.54 -43.42 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049279981.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.684 kcal
(2) G-P(sol) polarization free energy of solvation -34.882 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.197 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.541 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.422 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.738 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds