Wall clock time and date at job start Tue Mar 31 2020 12:37:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31627 * 1
3 3 Si 1.86803 * 119.99817 * 2 1
4 4 H 1.48499 * 109.46958 * 269.99726 * 3 2 1
5 5 H 1.48510 * 109.46825 * 29.99350 * 3 2 1
6 6 H 1.48494 * 109.47220 * 149.99469 * 3 2 1
7 7 C 1.38801 * 120.00391 * 179.97438 * 2 1 3
8 8 H 1.07995 * 119.99614 * 0.02562 * 7 2 1
9 9 S 1.76199 * 119.99872 * 180.02562 * 7 2 1
10 10 C 1.81002 * 99.99841 * 180.02562 * 9 7 2
11 11 C 1.50693 * 109.47281 * 180.02562 * 10 9 7
12 12 O 1.21284 * 120.00198 * 0.27680 * 11 10 9
13 13 N 1.34779 * 120.00246 * 180.02562 * 11 10 9
14 14 C 1.46495 * 120.00220 * 180.02562 * 13 11 10
15 15 H 1.09007 * 110.85273 * 322.65815 * 14 13 11
16 16 C 1.54624 * 110.97543 * 86.45015 * 14 13 11
17 17 C 1.51277 * 104.19815 * 142.91539 * 16 14 13
18 18 O 1.21283 * 124.94205 * 163.71415 * 17 16 14
19 19 N 1.34412 * 110.11587 * 343.75323 * 17 16 14
20 20 C 1.39927 * 124.35305 * 179.56964 * 19 17 16
21 21 C 1.38877 * 120.06643 * 353.93582 * 20 19 17
22 22 C 1.38111 * 119.92485 * 179.78932 * 21 20 19
23 23 C 1.38280 * 120.07713 * 0.48843 * 22 21 20
24 24 C 1.38290 * 120.13536 * 359.74024 * 23 22 21
25 25 C 1.38111 * 120.07148 * 0.02661 * 24 23 22
26 26 C 1.46762 * 111.30494 * 359.58969 * 19 17 16
27 27 H 0.97001 * 120.00496 * 0.02562 * 1 2 3
28 28 H 1.09008 * 109.47143 * 59.99836 * 10 9 7
29 29 H 1.09005 * 109.47225 * 300.00425 * 10 9 7
30 30 H 0.96998 * 119.99566 * 359.97438 * 13 11 10
31 31 H 1.09000 * 110.49035 * 261.60363 * 16 14 13
32 32 H 1.09002 * 110.48076 * 24.10508 * 16 14 13
33 33 H 1.08001 * 120.03709 * 0.02797 * 21 20 19
34 34 H 1.08011 * 119.95857 * 180.23052 * 22 21 20
35 35 H 1.07996 * 119.93601 * 179.76738 * 23 22 21
36 36 H 1.08001 * 119.95833 * 179.97438 * 24 23 22
37 37 H 1.07999 * 120.03214 * 180.02562 * 25 24 23
38 38 H 1.09001 * 110.25111 * 258.02129 * 26 19 17
39 39 H 1.08993 * 110.24897 * 136.01591 * 26 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2502 1.6178 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4475 2.6528 0.7000
6 1 3.5477 1.4403 0.7001
7 6 2.0104 -1.2020 0.0005
8 1 1.4704 -2.1373 0.0005
9 16 3.7724 -1.2018 0.0012
10 6 4.0868 -2.9844 0.0009
11 6 5.5732 -3.2323 0.0021
12 8 6.3442 -2.2960 0.0081
13 7 6.0459 -4.4944 0.0016
14 6 7.4909 -4.7354 0.0033
15 1 8.0077 -3.9999 -0.6133
16 6 8.0497 -4.7396 1.4450
17 6 9.1123 -5.8162 1.4280
18 8 9.9772 -5.9518 2.2673
19 7 8.9590 -6.6000 0.3469
20 6 9.7865 -7.6840 0.0338
21 6 10.9221 -7.9345 0.7930
22 6 11.7345 -9.0078 0.4840
23 6 11.4239 -9.8266 -0.5862
24 6 10.2964 -9.5770 -1.3470
25 6 9.4773 -8.5081 -1.0403
26 6 7.8123 -6.1726 -0.4633
27 1 -0.4851 0.8400 -0.0004
28 1 3.6442 -3.4313 -0.8894
29 1 3.6434 -3.4317 0.8907
30 1 5.4293 -5.2432 0.0009
31 1 8.4903 -3.7723 1.6862
32 1 7.2635 -4.9880 2.1580
33 1 11.1675 -7.2931 1.6265
34 1 12.6158 -9.2054 1.0764
35 1 12.0628 -10.6630 -0.8281
36 1 10.0567 -10.2181 -2.1825
37 1 8.5967 -8.3140 -1.6347
38 1 6.9591 -6.8269 -0.2842
39 1 8.0756 -6.1759 -1.5209
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000049279981.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:33
Heat of formation + Delta-G solvation = -56.485767 kcal
Electronic energy + Delta-G solvation = -23059.998363 eV
Core-core repulsion = 19478.978529 eV
Total energy + Delta-G solvation = -3581.019834 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.35811 -40.62501 -39.50845 -37.97650 -35.66880 -34.64789 -33.20150 -31.88429
-30.92142 -29.50659 -28.54561 -27.81030 -24.14297 -24.07696 -22.40138 -21.86673
-20.89415 -19.88897 -18.82578 -18.25922 -17.74787 -17.48399 -17.08288 -16.73289
-16.51236 -16.36581 -15.74579 -15.58097 -15.14945 -14.96906 -14.88943 -14.72658
-14.62950 -14.44393 -14.29602 -13.69685 -13.57970 -13.32072 -13.04906 -12.98238
-12.67199 -12.60777 -12.46238 -12.09660 -11.85693 -11.33196 -11.15215 -11.11456
-10.91217 -10.49666 -10.23495 -9.91349 -8.98553 -8.96219 -8.49519 -6.19464
0.23390 0.43745 1.00067 1.32881 1.38803 1.45218 1.51155 1.54714
1.66774 2.13913 2.26400 2.72520 2.88629 2.89070 3.08544 3.27428
3.57272 3.87744 3.90988 3.98787 4.06274 4.28904 4.30117 4.36669
4.39472 4.51526 4.53395 4.53740 4.61131 4.70848 4.76678 5.10532
5.19684 5.30455 5.41987 5.54863 5.62793 5.72844 5.92801 6.09425
6.14393 6.41435 6.81180 6.96185 7.16249 8.62550
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.038326 B = 0.002182 C = 0.002114
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.396028 B =12827.431653 C =13239.589705
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.917 5.917
2 C 0.044 3.956
3 Si 0.913 3.087
4 H -0.263 1.263
5 H -0.263 1.263
6 H -0.236 1.236
7 C -0.526 4.526
8 H 0.065 0.935
9 S -0.179 6.179
10 C -0.112 4.112
11 C 0.543 3.457
12 O -0.555 6.555
13 N -0.698 5.698
14 C 0.147 3.853
15 H 0.106 0.894
16 C -0.163 4.163
17 C 0.517 3.483
18 O -0.548 6.548
19 N -0.555 5.555
20 C 0.144 3.856
21 C -0.185 4.185
22 C -0.102 4.102
23 C -0.148 4.148
24 C -0.093 4.093
25 C -0.155 4.155
26 C 0.097 3.903
27 H 0.276 0.724
28 H 0.120 0.880
29 H 0.117 0.883
30 H 0.424 0.576
31 H 0.103 0.897
32 H 0.125 0.875
33 H 0.128 0.872
34 H 0.136 0.864
35 H 0.146 0.854
36 H 0.156 0.844
37 H 0.153 0.847
38 H 0.119 0.881
39 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.507 -22.247 -3.960 29.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.555 5.555
2 C -0.161 4.161
3 Si 0.735 3.265
4 H -0.187 1.187
5 H -0.187 1.187
6 H -0.160 1.160
7 C -0.674 4.674
8 H 0.083 0.917
9 S 0.048 5.952
10 C -0.263 4.263
11 C 0.329 3.671
12 O -0.432 6.432
13 N -0.354 5.354
14 C 0.040 3.960
15 H 0.124 0.876
16 C -0.204 4.204
17 C 0.307 3.693
18 O -0.426 6.426
19 N -0.278 5.278
20 C 0.051 3.949
21 C -0.205 4.205
22 C -0.121 4.121
23 C -0.166 4.166
24 C -0.111 4.111
25 C -0.176 4.176
26 C -0.025 4.025
27 H 0.085 0.915
28 H 0.138 0.862
29 H 0.135 0.865
30 H 0.263 0.737
31 H 0.121 0.879
32 H 0.143 0.857
33 H 0.145 0.855
34 H 0.154 0.846
35 H 0.164 0.836
36 H 0.173 0.827
37 H 0.170 0.830
38 H 0.137 0.863
39 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 21.035 -20.669 -3.518 29.700
hybrid contribution -1.345 -0.350 0.359 1.435
sum 19.690 -21.019 -3.160 28.974
Atomic orbital electron populations
1.70013 1.07296 1.28934 1.49285 1.25560 0.95249 1.02243 0.93072
0.85884 0.80701 0.79744 0.80147 1.18735 1.18747 1.15986 1.22468
0.90332 0.96644 1.57933 0.91706 1.84773 1.06325 1.06514 1.97602
1.23276 0.95628 0.99405 1.07955 1.19925 0.89403 0.83100 0.74708
1.90729 1.59199 1.43798 1.49429 1.45513 1.06650 1.07420 1.75798
1.21598 0.81972 0.97413 0.94998 0.87611 1.22842 0.98421 0.98746
1.00417 1.21311 0.85025 0.82933 0.80023 1.90620 1.37393 1.72977
1.41569 1.45844 1.29333 1.28024 1.24616 1.18033 0.91162 0.88727
0.96970 1.21618 0.95553 1.00993 1.02378 1.21284 0.99214 0.93899
0.97655 1.21495 0.98601 1.00742 0.95797 1.21377 0.93709 0.96396
0.99632 1.21118 1.02747 0.96243 0.97454 1.22650 0.88665 0.93734
0.97401 0.91471 0.86219 0.86497 0.73696 0.87901 0.85721 0.85473
0.84631 0.83607 0.82665 0.82984 0.86318 0.86059
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -54.64 13.97 21.65 0.30 -54.34 16
2 C 0.04 2.52 5.50 84.86 0.47 2.98 16
3 Si 0.91 43.89 27.74 68.60 1.90 45.79 16
4 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16
5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16
6 H -0.24 -11.28 6.74 99.48 0.67 -10.61 16
7 C -0.53 -29.31 10.04 67.95 0.68 -28.63 16
8 H 0.06 3.79 8.03 -2.91 -0.02 3.77 16
9 S -0.18 -8.45 18.55 -56.49 -1.05 -9.49 16
10 C -0.11 -3.61 6.16 71.23 0.44 -3.17 16
11 C 0.54 15.15 7.85 87.65 0.69 15.84 16
12 O -0.55 -20.50 15.61 -3.04 -0.05 -20.55 16
13 N -0.70 -11.08 5.18 -437.54 -2.27 -13.35 16
14 C 0.15 2.19 3.42 46.05 0.16 2.34 16
15 H 0.11 1.90 7.73 -2.38 -0.02 1.89 16
16 C -0.16 -3.02 6.59 30.58 0.20 -2.82 16
17 C 0.52 11.58 7.92 87.90 0.70 12.28 16
18 O -0.55 -16.52 14.82 -3.04 -0.05 -16.57 16
19 N -0.56 -9.43 3.14 -627.71 -1.97 -11.39 16
20 C 0.14 2.64 6.60 38.15 0.25 2.89 16
21 C -0.19 -3.98 9.28 22.39 0.21 -3.78 16
22 C -0.10 -1.67 10.04 22.25 0.22 -1.45 16
23 C -0.15 -1.78 10.04 22.29 0.22 -1.56 16
24 C -0.09 -0.98 10.04 22.25 0.22 -0.75 16
25 C -0.16 -1.91 9.40 22.39 0.21 -1.70 16
26 C 0.10 0.89 5.99 86.83 0.52 1.41 16
27 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16
28 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16
29 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16
30 H 0.42 3.57 8.37 -92.71 -0.78 2.79 16
31 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16
32 H 0.12 2.08 8.08 -2.39 -0.02 2.06 16
33 H 0.13 3.40 5.27 -2.91 -0.02 3.38 16
34 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16
35 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16
36 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16
37 H 0.15 0.98 7.02 -2.91 -0.02 0.96 16
38 H 0.12 0.45 7.77 -2.39 -0.02 0.43 16
39 H 0.12 0.65 7.70 -2.39 -0.02 0.63 16
Total: -1.00 -78.98 345.69 2.29 -76.68
By element:
Atomic # 1 Polarization: 9.05 SS G_CDS: 0.28 Total: 9.33 kcal
Atomic # 6 Polarization: -11.31 SS G_CDS: 5.19 Total: -6.12 kcal
Atomic # 7 Polarization: -75.14 SS G_CDS: -3.93 Total: -79.08 kcal
Atomic # 8 Polarization: -37.02 SS G_CDS: -0.09 Total: -37.12 kcal
Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal
Atomic # 16 Polarization: -8.45 SS G_CDS: -1.05 Total: -9.49 kcal
Total: -78.98 2.29 -76.68 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000049279981.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.195 kcal
(2) G-P(sol) polarization free energy of solvation -78.975 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.780 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.681 kcal
(6) G-S(sol) free energy of system = (1) + (5) -56.486 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds