Wall clock time and date at job start Tue Mar 31 2020 13:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34950 * 125.62941 * 2 1 4 4 C 1.40612 * 107.09663 * 179.97438 * 3 2 1 5 5 C 1.36428 * 106.71460 * 0.02562 * 4 3 2 6 6 C 1.46859 * 125.97470 * 180.02562 * 5 4 3 7 7 N 1.30926 * 125.28911 * 359.68775 * 6 5 4 8 8 C 1.30351 * 117.32202 * 179.80714 * 7 6 5 9 9 C 1.50700 * 122.34385 * 180.25234 * 8 7 6 10 10 C 1.36818 * 115.31271 * 0.49285 * 8 7 6 11 11 C 1.46422 * 126.00128 * 179.71124 * 10 8 7 12 12 O 1.21731 * 119.99876 * 350.59230 * 11 10 8 13 13 N 1.34771 * 119.99893 * 170.59568 * 11 10 8 14 14 C 1.46502 * 120.00347 * 0.60971 * 13 11 10 15 15 C 1.46503 * 120.00113 * 180.61020 * 13 11 10 16 16 C 1.50701 * 109.46847 * 89.99837 * 15 13 11 17 17 H 1.08001 * 120.00000 * 0.02562 * 16 15 13 18 18 C 1.37883 * 119.99779 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99820 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99748 * 359.97438 * 18 16 15 21 21 H 1.48511 * 109.46950 * 90.00499 * 20 18 16 22 22 H 1.48501 * 109.47011 * 209.99634 * 20 18 16 23 23 H 1.48499 * 109.47750 * 330.00268 * 20 18 16 24 24 S 1.76118 * 125.29135 * 179.97438 * 6 5 4 25 25 O 1.34166 * 125.62953 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47117 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46814 * 299.97247 * 1 2 3 28 28 H 1.08995 * 109.47416 * 59.97846 * 1 2 3 29 29 H 1.08007 * 126.44744 * 0.03397 * 3 2 1 30 30 H 1.07995 * 126.64264 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47311 * 270.24994 * 9 8 7 32 32 H 1.08995 * 109.47164 * 30.25635 * 9 8 7 33 33 H 1.09011 * 109.46766 * 150.25308 * 9 8 7 34 34 H 1.08999 * 109.46855 * 83.51600 * 14 13 11 35 35 H 1.08992 * 109.47564 * 203.51986 * 14 13 11 36 36 H 1.09006 * 109.47162 * 323.52444 * 14 13 11 37 37 H 1.08997 * 109.46915 * 209.99883 * 15 13 11 38 38 H 1.08999 * 109.47114 * 330.00139 * 15 13 11 39 39 H 0.97002 * 119.99493 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0969 0.0000 4 6 3.6264 0.6499 0.0006 5 6 3.5831 -0.7136 0.0004 6 6 4.7436 -1.6136 0.0013 7 7 5.9962 -1.2326 -0.0032 8 6 6.9056 -2.1665 0.0024 9 6 8.3802 -1.8558 0.0036 10 6 6.4277 -3.4485 0.0019 11 6 7.2370 -4.6687 0.0014 12 8 8.4401 -4.6010 -0.1708 13 7 6.6498 -5.8668 0.1916 14 6 5.2000 -5.9495 0.3856 15 6 7.4612 -7.0865 0.2046 16 6 7.9194 -7.3700 1.6119 17 1 7.6343 -6.7082 2.4163 18 6 8.7026 -8.4745 1.8726 19 7 9.1021 -8.7222 3.1008 20 14 9.1951 -9.6195 0.4813 21 1 10.4775 -9.1585 -0.1089 22 1 9.3605 -10.9976 1.0094 23 1 8.1391 -9.6129 -0.5627 24 16 4.6667 -3.3731 0.0016 25 8 2.2886 -1.0905 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5134 0.8903 28 1 -0.3634 0.5141 -0.8897 29 1 1.9608 2.1245 0.0005 30 1 4.5129 1.2667 0.0004 31 1 8.7367 -1.7809 -1.0237 32 1 8.5519 -0.9101 0.5176 33 1 8.9188 -2.6519 0.5179 34 1 4.7032 -5.9514 -0.5846 35 1 4.9567 -6.8676 0.9201 36 1 4.8614 -5.0908 0.9654 37 1 6.8650 -7.9233 -0.1591 38 1 8.3298 -6.9519 -0.4401 39 1 9.6534 -9.4990 3.2841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075514737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:05 Heat of formation + Delta-G solvation = 35.244175 kcal Electronic energy + Delta-G solvation = -23685.128590 eV Core-core repulsion = 20108.086464 eV Total energy + Delta-G solvation = -3577.042126 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.87197 -39.97655 -38.69530 -35.16028 -33.57278 -33.13140 -32.61277 -31.19076 -29.30596 -27.81902 -27.63683 -26.05816 -23.98005 -23.02516 -22.11596 -20.72871 -20.23120 -18.62431 -17.98002 -17.03761 -16.91991 -16.64632 -16.20998 -15.44126 -15.26558 -14.86894 -14.36682 -13.94761 -13.75460 -13.52666 -13.42410 -13.36171 -13.18691 -12.98848 -12.77429 -12.63220 -12.43499 -12.25972 -12.24756 -11.95719 -11.63632 -11.23899 -11.00959 -10.60402 -10.31074 -10.24049 -9.76187 -9.60904 -9.53575 -9.29226 -9.12290 -8.64384 -8.12879 -7.76048 -6.13907 -4.14043 -0.08256 1.14770 1.44330 1.57415 2.21803 2.22225 2.83906 3.25552 3.31296 3.33447 3.50179 3.70297 4.01244 4.34615 4.48881 4.69384 4.71542 4.88892 4.97347 5.03481 5.16062 5.20118 5.26235 5.29368 5.45854 5.56111 5.63207 5.72777 5.86528 5.91294 5.93412 6.00230 6.17647 6.51591 6.56184 6.73529 6.82931 7.12755 7.51724 7.60330 7.99234 8.38462 8.70430 8.89340 9.44939 10.99253 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.003044 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.644735 B = 9197.204983 C = 9907.383342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.009 3.991 3 C -0.216 4.216 4 C -0.131 4.131 5 C 0.035 3.965 6 C 0.104 3.896 7 N -0.457 5.457 8 C 0.143 3.857 9 C -0.084 4.084 10 C -0.274 4.274 11 C 0.584 3.416 12 O -0.517 6.517 13 N -0.588 5.588 14 C 0.070 3.930 15 C 0.218 3.782 16 C -0.534 4.534 17 H 0.075 0.925 18 C 0.074 3.926 19 N -0.894 5.894 20 Si 0.876 3.124 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.265 1.265 24 S 0.185 5.815 25 O -0.165 6.165 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.155 0.845 30 H 0.160 0.840 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.101 0.899 34 H 0.057 0.943 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.042 0.958 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.610 17.042 -7.794 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.043 4.043 3 C -0.235 4.235 4 C -0.156 4.156 5 C -0.017 4.017 6 C -0.165 4.165 7 N -0.173 5.173 8 C 0.004 3.996 9 C -0.143 4.143 10 C -0.398 4.398 11 C 0.370 3.630 12 O -0.395 6.395 13 N -0.319 5.319 14 C -0.076 4.076 15 C 0.098 3.902 16 C -0.572 4.572 17 H 0.093 0.907 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.190 1.190 24 S 0.446 5.554 25 O -0.062 6.062 26 H 0.098 0.902 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.060 0.940 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.699 16.334 -7.783 25.311 hybrid contribution 1.052 -0.298 -0.436 1.177 sum -16.647 16.037 -8.219 24.532 Atomic orbital electron populations 1.20393 0.84480 1.04467 1.03916 1.22693 0.94085 0.83753 1.03818 1.21566 0.92383 0.99727 1.09839 1.21929 0.98505 0.92697 1.02433 1.18559 0.80352 0.91485 1.11343 1.24577 0.91631 0.96247 1.04073 1.66216 0.98031 1.36486 1.16610 1.20654 0.97457 0.85476 0.96060 1.20633 0.86579 1.03444 1.03672 1.26038 0.95582 0.99618 1.18563 1.16563 0.86644 0.81431 0.78359 1.90790 1.13172 1.85390 1.50161 1.47713 1.07395 1.07471 1.69288 1.21914 0.81549 1.03102 1.01040 1.19774 0.91104 0.80435 0.98909 1.21296 1.32676 1.10806 0.92427 0.90651 1.24847 0.95094 0.97354 0.95560 1.69893 1.35902 1.28300 1.19152 0.86854 0.79917 0.80341 0.82601 1.19768 1.20978 1.19024 1.85400 1.02865 1.00892 1.66233 1.83981 1.15300 1.35084 1.71796 0.90248 0.89218 0.89253 0.82704 0.82262 0.90119 0.90978 0.88057 0.92470 0.88320 0.91912 0.94746 0.94011 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.41 36.01 0.37 0.02 16 2 C 0.01 0.08 7.31 -35.47 -0.26 -0.18 16 3 C -0.22 -1.92 10.77 -39.85 -0.43 -2.35 16 4 C -0.13 -1.48 10.79 -39.34 -0.42 -1.90 16 5 C 0.04 0.46 7.21 -36.75 -0.26 0.20 16 6 C 0.10 1.54 7.44 -14.45 -0.11 1.43 16 7 N -0.46 -7.34 10.44 -7.21 -0.08 -7.41 16 8 C 0.14 2.43 6.78 -83.73 -0.57 1.86 16 9 C -0.08 -1.31 9.56 36.01 0.34 -0.97 16 10 C -0.27 -4.90 6.25 -36.80 -0.23 -5.13 16 11 C 0.58 12.45 7.59 -12.97 -0.10 12.35 16 12 O -0.52 -12.45 13.96 5.16 0.07 -12.38 16 13 N -0.59 -12.32 2.86 -184.60 -0.53 -12.85 16 14 C 0.07 1.12 8.94 59.85 0.54 1.65 16 15 C 0.22 5.24 4.20 -5.19 -0.02 5.22 16 16 C -0.53 -15.13 9.94 -34.44 -0.34 -15.47 16 17 H 0.08 2.36 8.06 -52.49 -0.42 1.94 16 18 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 19 N -0.89 -27.29 13.96 55.43 0.77 -26.52 16 20 Si 0.88 21.15 27.47 -169.99 -4.67 16.49 16 21 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 24 S 0.18 2.64 18.33 -107.50 -1.97 0.67 16 25 O -0.17 -1.96 10.67 4.64 0.05 -1.91 16 26 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 30 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.10 1.80 6.21 -51.92 -0.32 1.48 16 34 H 0.06 0.76 7.80 -51.93 -0.40 0.35 16 35 H 0.10 1.53 8.02 -51.93 -0.42 1.11 16 36 H 0.06 0.95 4.63 -23.74 -0.11 0.84 16 37 H 0.03 0.78 7.13 -51.93 -0.37 0.41 16 38 H 0.04 1.06 6.84 -51.93 -0.36 0.70 16 39 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 344.93 15.07 5.20 5.20 Total: -1.00 -34.14 344.93 -7.27 -41.41 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -4.53 Total: -1.46 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -1.59 Total: -1.23 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.17 Total: -46.78 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.12 Total: -14.29 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 16 Polarization: 2.64 SS G_CDS: -1.97 Total: 0.67 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.14 -7.27 -41.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075514737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.652 kcal (2) G-P(sol) polarization free energy of solvation -34.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds