Wall clock time and date at job start Tue Mar 31 2020 13:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34950 * 125.62941 * 2 1 4 4 C 1.40612 * 107.09663 * 179.97438 * 3 2 1 5 5 C 1.36428 * 106.71460 * 0.02562 * 4 3 2 6 6 C 1.46859 * 125.97470 * 180.02562 * 5 4 3 7 7 N 1.30926 * 125.28911 * 359.68775 * 6 5 4 8 8 C 1.30351 * 117.32202 * 179.80714 * 7 6 5 9 9 C 1.50700 * 122.34385 * 180.25234 * 8 7 6 10 10 C 1.36818 * 115.31271 * 0.49285 * 8 7 6 11 11 C 1.46422 * 126.00128 * 179.71124 * 10 8 7 12 12 O 1.21731 * 119.99876 * 350.59230 * 11 10 8 13 13 N 1.34771 * 119.99893 * 170.59568 * 11 10 8 14 14 C 1.46502 * 120.00347 * 0.60971 * 13 11 10 15 15 C 1.46503 * 120.00113 * 180.61020 * 13 11 10 16 16 C 1.50701 * 109.46847 * 89.99837 * 15 13 11 17 17 H 1.08001 * 120.00000 * 0.02562 * 16 15 13 18 18 C 1.37883 * 119.99779 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99820 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 119.99748 * 359.97438 * 18 16 15 21 21 H 1.48511 * 109.46950 * 90.00499 * 20 18 16 22 22 H 1.48501 * 109.47011 * 209.99634 * 20 18 16 23 23 H 1.48499 * 109.47750 * 330.00268 * 20 18 16 24 24 S 1.76118 * 125.29135 * 179.97438 * 6 5 4 25 25 O 1.34166 * 125.62953 * 179.97438 * 2 1 3 26 26 H 1.09005 * 109.47117 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46814 * 299.97247 * 1 2 3 28 28 H 1.08995 * 109.47416 * 59.97846 * 1 2 3 29 29 H 1.08007 * 126.44744 * 0.03397 * 3 2 1 30 30 H 1.07995 * 126.64264 * 179.97438 * 4 3 2 31 31 H 1.08994 * 109.47311 * 270.24994 * 9 8 7 32 32 H 1.08995 * 109.47164 * 30.25635 * 9 8 7 33 33 H 1.09011 * 109.46766 * 150.25308 * 9 8 7 34 34 H 1.08999 * 109.46855 * 83.51600 * 14 13 11 35 35 H 1.08992 * 109.47564 * 203.51986 * 14 13 11 36 36 H 1.09006 * 109.47162 * 323.52444 * 14 13 11 37 37 H 1.08997 * 109.46915 * 209.99883 * 15 13 11 38 38 H 1.08999 * 109.47114 * 330.00139 * 15 13 11 39 39 H 0.97002 * 119.99493 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2932 1.0969 0.0000 4 6 3.6264 0.6499 0.0006 5 6 3.5831 -0.7136 0.0004 6 6 4.7436 -1.6136 0.0013 7 7 5.9962 -1.2326 -0.0032 8 6 6.9056 -2.1665 0.0024 9 6 8.3802 -1.8558 0.0036 10 6 6.4277 -3.4485 0.0019 11 6 7.2370 -4.6687 0.0014 12 8 8.4401 -4.6010 -0.1708 13 7 6.6498 -5.8668 0.1916 14 6 5.2000 -5.9495 0.3856 15 6 7.4612 -7.0865 0.2046 16 6 7.9194 -7.3700 1.6119 17 1 7.6343 -6.7082 2.4163 18 6 8.7026 -8.4745 1.8726 19 7 9.1021 -8.7222 3.1008 20 14 9.1951 -9.6195 0.4813 21 1 10.4775 -9.1585 -0.1089 22 1 9.3605 -10.9976 1.0094 23 1 8.1391 -9.6129 -0.5627 24 16 4.6667 -3.3731 0.0016 25 8 2.2886 -1.0905 0.0005 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5134 0.8903 28 1 -0.3634 0.5141 -0.8897 29 1 1.9608 2.1245 0.0005 30 1 4.5129 1.2667 0.0004 31 1 8.7367 -1.7809 -1.0237 32 1 8.5519 -0.9101 0.5176 33 1 8.9188 -2.6519 0.5179 34 1 4.7032 -5.9514 -0.5846 35 1 4.9567 -6.8676 0.9201 36 1 4.8614 -5.0908 0.9654 37 1 6.8650 -7.9233 -0.1591 38 1 8.3298 -6.9519 -0.4401 39 1 9.6534 -9.4990 3.2841 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075514737.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:04 Heat of formation + Delta-G solvation = 12.254330 kcal Electronic energy + Delta-G solvation = -23686.125504 eV Core-core repulsion = 20108.086464 eV Total energy + Delta-G solvation = -3578.039040 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.68464 -41.35369 -40.16824 -36.84598 -34.80445 -34.37159 -34.00437 -32.16551 -31.05302 -29.19030 -28.57530 -27.60417 -24.96996 -24.76495 -23.09499 -21.74951 -21.54528 -19.74760 -19.39781 -19.18075 -18.09116 -17.62841 -17.49418 -16.93785 -16.68302 -16.16481 -15.78276 -15.38167 -15.02649 -14.86764 -14.45448 -14.24781 -14.08924 -14.00458 -13.92629 -13.90564 -13.80078 -13.58727 -13.44102 -13.30506 -12.91053 -12.77060 -12.48725 -12.43092 -12.09561 -11.77214 -11.20241 -11.03354 -10.84680 -10.83250 -10.66243 -10.24017 -9.62123 -8.93331 -8.35335 -6.42005 -1.25812 -0.04193 0.34793 0.48318 1.31117 1.33854 1.36641 1.38324 1.46399 1.72030 1.96940 2.17924 2.30607 2.98751 3.07154 3.50230 3.59412 3.86666 3.93229 3.94585 3.99774 4.34514 4.46468 4.55255 4.64256 4.66793 4.71540 4.72714 4.75738 4.77871 4.79978 4.86933 4.99191 5.16292 5.24018 5.38847 5.43151 5.49476 5.92440 6.18342 6.33120 6.45650 6.59368 7.05721 7.23823 8.81651 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.024585 B = 0.003044 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.644735 B = 9197.204983 C = 9907.383342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 C -0.223 4.223 4 C -0.118 4.118 5 C -0.010 4.010 6 C 0.117 3.883 7 N -0.476 5.476 8 C 0.148 3.852 9 C -0.081 4.081 10 C -0.320 4.320 11 C 0.579 3.421 12 O -0.561 6.561 13 N -0.598 5.598 14 C 0.064 3.936 15 C 0.226 3.774 16 C -0.541 4.541 17 H 0.026 0.974 18 C 0.013 3.987 19 N -0.944 5.944 20 Si 0.949 3.051 21 H -0.275 1.275 22 H -0.275 1.275 23 H -0.234 1.234 24 S 0.233 5.767 25 O -0.179 6.179 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.187 0.813 30 H 0.164 0.836 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.029 0.971 39 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.893 18.281 -9.606 29.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C -0.242 4.242 4 C -0.143 4.143 5 C -0.063 4.063 6 C -0.151 4.151 7 N -0.192 5.192 8 C 0.008 3.992 9 C -0.140 4.140 10 C -0.444 4.444 11 C 0.367 3.633 12 O -0.442 6.442 13 N -0.329 5.329 14 C -0.080 4.080 15 C 0.105 3.895 16 C -0.579 4.579 17 H 0.045 0.955 18 C -0.185 4.185 19 N -0.584 5.584 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.200 1.200 23 H -0.157 1.157 24 S 0.496 5.504 25 O -0.076 6.076 26 H 0.101 0.899 27 H 0.129 0.871 28 H 0.131 0.869 29 H 0.204 0.796 30 H 0.182 0.818 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.121 0.879 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.038 17.568 -9.600 29.041 hybrid contribution 1.815 -0.395 0.216 1.870 sum -19.223 17.173 -9.383 27.431 Atomic orbital electron populations 1.20683 0.81259 1.05449 1.05995 1.23685 0.95756 0.83059 1.00451 1.21946 0.91044 1.01358 1.09807 1.22251 1.00024 0.92158 0.99888 1.18486 0.80522 0.91817 1.15445 1.25005 0.92028 0.96996 1.01120 1.66283 0.98349 1.35979 1.18632 1.20852 0.98158 0.85567 0.94660 1.20580 0.85998 1.03267 1.04146 1.25635 0.97868 0.98357 1.22535 1.16993 0.86552 0.82399 0.77355 1.90742 1.15114 1.86257 1.52106 1.47757 1.09179 1.06571 1.69353 1.22181 0.78896 1.03740 1.03209 1.19490 0.91688 0.82623 0.95714 1.21500 1.32911 1.10021 0.93504 0.95524 1.25856 0.94834 0.99323 0.98491 1.70051 1.37085 1.29408 1.21843 0.85697 0.80013 0.77701 0.79436 1.20056 1.20031 1.15714 1.84962 0.99405 1.00271 1.65795 1.83984 1.14942 1.36435 1.72204 0.89886 0.87074 0.86939 0.79561 0.81846 0.89124 0.88984 0.90828 0.89055 0.87911 0.91188 0.92094 0.95343 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.41 71.24 0.74 0.35 16 2 C 0.02 0.34 7.31 24.93 0.18 0.52 16 3 C -0.22 -3.17 10.77 22.09 0.24 -2.93 16 4 C -0.12 -2.41 10.79 22.43 0.24 -2.17 16 5 C -0.01 -0.26 7.21 24.11 0.17 -0.08 16 6 C 0.12 3.37 7.44 87.09 0.65 4.02 16 7 N -0.48 -15.18 10.44 -176.74 -1.85 -17.03 16 8 C 0.15 5.15 6.78 42.45 0.29 5.44 16 9 C -0.08 -2.62 9.56 71.24 0.68 -1.94 16 10 C -0.32 -11.72 6.25 24.07 0.15 -11.57 16 11 C 0.58 25.66 7.59 86.37 0.66 26.31 16 12 O -0.56 -28.58 13.96 -4.45 -0.06 -28.64 16 13 N -0.60 -25.50 2.86 -856.16 -2.45 -27.95 16 14 C 0.06 1.99 8.94 127.77 1.14 3.13 16 15 C 0.23 10.98 4.20 85.63 0.36 11.34 16 16 C -0.54 -31.84 9.94 25.60 0.25 -31.59 16 17 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 18 C 0.01 0.78 5.47 84.66 0.46 1.24 16 19 N -0.94 -59.65 13.96 21.45 0.30 -59.35 16 20 Si 0.95 43.77 27.47 68.60 1.88 45.65 16 21 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.23 -9.54 6.54 99.48 0.65 -8.89 16 24 S 0.23 6.47 18.33 -56.49 -1.04 5.44 16 25 O -0.18 -3.83 10.67 -6.32 -0.07 -3.89 16 26 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 27 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 29 H 0.19 1.39 8.06 -2.91 -0.02 1.36 16 30 H 0.16 3.10 8.06 -2.91 -0.02 3.08 16 31 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.82 6.21 -2.38 -0.01 2.80 16 34 H 0.09 2.22 7.80 -2.39 -0.02 2.20 16 35 H 0.10 3.10 8.02 -2.39 -0.02 3.08 16 36 H 0.07 2.08 4.63 -20.30 -0.09 1.99 16 37 H 0.06 2.63 7.13 -2.39 -0.02 2.62 16 38 H 0.03 1.46 6.84 -2.39 -0.02 1.44 16 39 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -78.86 344.93 3.89 -74.96 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.95 Total: 8.73 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: 6.22 Total: 2.08 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.99 Total: -104.32 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.13 Total: -32.54 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Atomic # 16 Polarization: 6.47 SS G_CDS: -1.04 Total: 5.44 kcal Total: -78.86 3.89 -74.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075514737.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.215 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds