Wall clock time and date at job start Tue Mar 31 2020 12:40:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86796 * 120.00332 * 2 1
4 4 H 1.48500 * 109.47090 * 359.97438 * 3 2 1
5 5 H 1.48492 * 109.47118 * 120.00066 * 3 2 1
6 6 H 1.48497 * 109.47159 * 240.00350 * 3 2 1
7 7 C 1.38731 * 119.99500 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99675 * 180.02562 * 7 2 1
9 9 S 1.76199 * 120.00411 * 359.97438 * 7 2 1
10 10 C 1.76194 * 100.00178 * 174.89217 * 9 7 2
11 11 C 1.39221 * 120.01716 * 274.27076 * 10 9 7
12 12 C 1.38145 * 120.19882 * 179.69527 * 11 10 9
13 13 C 1.38080 * 120.24428 * 0.60392 * 12 11 10
14 14 C 1.39634 * 120.03467 * 359.67545 * 13 12 11
15 15 C 1.47868 * 120.09881 * 180.02562 * 14 13 12
16 16 O 1.21551 * 120.00165 * 179.97438 * 15 14 13
17 17 N 1.34774 * 119.99761 * 359.97203 * 15 14 13
18 18 C 1.46502 * 119.99774 * 180.02562 * 17 15 14
19 19 H 1.08994 * 109.60463 * 34.67799 * 18 17 15
20 20 C 1.53341 * 109.60344 * 155.00372 * 18 17 15
21 21 C 1.53069 * 108.42656 * 187.28912 * 20 18 17
22 22 C 1.50175 * 109.88800 * 311.09509 * 21 20 18
23 23 O 1.21281 * 118.24543 * 197.60668 * 22 21 20
24 24 N 1.33351 * 123.51204 * 17.58453 * 22 21 20
25 25 C 1.45756 * 124.10268 * 357.77657 * 24 22 21
26 26 C 1.38830 * 120.02391 * 94.54726 * 10 9 7
27 27 H 0.97003 * 119.99857 * 0.02562 * 1 2 3
28 28 H 1.07993 * 119.90243 * 359.97438 * 11 10 9
29 29 H 1.08002 * 119.87655 * 180.32307 * 12 11 10
30 30 H 1.07995 * 119.97993 * 179.70074 * 13 12 11
31 31 H 0.97004 * 120.00129 * 0.02562 * 17 15 14
32 32 H 1.09008 * 109.67542 * 307.02104 * 20 18 17
33 33 H 1.08997 * 109.68015 * 67.55113 * 20 18 17
34 34 H 1.08992 * 109.40569 * 71.22519 * 21 20 18
35 35 H 1.09008 * 109.40226 * 190.97435 * 21 20 18
36 36 H 0.97000 * 117.95534 * 177.77442 * 24 22 21
37 37 H 1.09006 * 109.30239 * 258.76228 * 25 24 22
38 38 H 1.09001 * 109.30047 * 139.38739 * 25 24 22
39 39 H 1.08008 * 120.12226 * 0.02562 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 1.2854 2.7464 -0.0006
5 1 3.1041 1.6962 1.2124
6 1 3.1040 1.6963 -1.2125
7 6 2.0098 -1.2015 -0.0005
8 1 3.0898 -1.2015 -0.0001
9 16 1.1288 -2.7274 -0.0005
10 6 2.4724 -3.8566 -0.1558
11 6 2.9681 -4.1803 -1.4159
12 6 4.0255 -5.0603 -1.5416
13 6 4.5899 -5.6342 -0.4197
14 6 4.0969 -5.3211 0.8487
15 6 4.7005 -5.9344 2.0511
16 8 4.2703 -5.6602 3.1544
17 7 5.7278 -6.7976 1.9238
18 6 6.3255 -7.4057 3.1151
19 1 5.5527 -7.5795 3.8638
20 6 6.9846 -8.7377 2.7372
21 6 7.4377 -9.4350 4.0222
22 6 8.2040 -8.4722 4.8830
23 8 8.9042 -8.9227 5.7649
24 7 8.1561 -7.1484 4.7295
25 6 7.3960 -6.4739 3.6845
26 6 3.0338 -4.4284 0.9779
27 1 -0.4850 0.8401 -0.0004
28 1 2.5275 -3.7387 -2.2974
29 1 4.4093 -5.3038 -2.5213
30 1 5.4132 -6.3254 -0.5232
31 1 6.0713 -7.0161 1.0433
32 1 6.2658 -9.3669 2.2121
33 1 7.8468 -8.5519 2.0968
34 1 6.5644 -9.7923 4.5676
35 1 8.0763 -10.2815 3.7690
36 1 8.6584 -6.6000 5.3522
37 1 8.0726 -6.1714 2.8851
38 1 6.9176 -5.5879 4.1019
39 1 2.6482 -4.1828 1.9565
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000079540067.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:40:51
Heat of formation + Delta-G solvation = -55.479388 kcal
Electronic energy + Delta-G solvation = -23214.950462 eV
Core-core repulsion = 19633.974268 eV
Total energy + Delta-G solvation = -3580.976194 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.89859 -39.88621 -38.09766 -36.88795 -34.45106 -33.00286 -32.55142 -31.10268
-30.61593 -28.72316 -25.61606 -25.17380 -23.93739 -22.78275 -22.15116 -20.58434
-19.87021 -18.31440 -17.78938 -17.37141 -16.53297 -16.50020 -15.88930 -15.47771
-15.10225 -14.98969 -14.89029 -14.56232 -14.30253 -14.24609 -13.84065 -13.73616
-13.48565 -13.02323 -12.59227 -12.45163 -12.18265 -11.88823 -11.73891 -11.46480
-11.22385 -11.20888 -11.11013 -10.76854 -10.16650 -10.08873 -9.91702 -9.56370
-9.38443 -9.19741 -9.09077 -8.68886 -8.09549 -6.76645 -6.32859 -4.07381
1.04954 1.57820 2.28175 2.63589 2.88074 3.06975 3.16864 3.18498
3.23186 3.40774 3.99676 4.08421 4.15528 4.19568 4.29550 4.42595
4.69088 4.77608 4.89007 4.98433 5.04030 5.12632 5.14488 5.22880
5.29052 5.42497 5.45361 5.57220 5.67552 5.78230 5.89600 6.08568
6.16294 6.37045 6.47131 6.55821 6.85325 6.94024 7.09536 7.27584
7.52641 7.83121 8.08520 8.27700 9.12740 10.73853
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.020625 B = 0.002584 C = 0.002429
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1357.235360 B =10831.274611 C =11523.212667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.870 5.870
2 C 0.074 3.926
3 Si 0.921 3.079
4 H -0.282 1.282
5 H -0.272 1.272
6 H -0.273 1.273
7 C -0.521 4.521
8 H 0.075 0.925
9 S -0.034 6.034
10 C -0.106 4.106
11 C -0.052 4.052
12 C -0.141 4.141
13 C -0.089 4.089
14 C -0.157 4.157
15 C 0.567 3.433
16 O -0.530 6.530
17 N -0.726 5.726
18 C 0.133 3.867
19 H 0.101 0.899
20 C -0.133 4.133
21 C -0.131 4.131
22 C 0.517 3.483
23 O -0.559 6.559
24 N -0.714 5.714
25 C 0.096 3.904
26 C -0.018 4.018
27 H 0.271 0.729
28 H 0.132 0.868
29 H 0.124 0.876
30 H 0.117 0.883
31 H 0.403 0.597
32 H 0.088 0.912
33 H 0.078 0.922
34 H 0.105 0.895
35 H 0.107 0.893
36 H 0.402 0.598
37 H 0.071 0.929
38 H 0.087 0.913
39 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.194 -16.281 -0.085 21.600
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.505 5.505
2 C -0.136 4.136
3 Si 0.747 3.253
4 H -0.207 1.207
5 H -0.198 1.198
6 H -0.199 1.199
7 C -0.669 4.669
8 H 0.093 0.907
9 S 0.200 5.800
10 C -0.217 4.217
11 C -0.073 4.073
12 C -0.161 4.161
13 C -0.108 4.108
14 C -0.162 4.162
15 C 0.356 3.644
16 O -0.406 6.406
17 N -0.379 5.379
18 C 0.027 3.973
19 H 0.119 0.881
20 C -0.171 4.171
21 C -0.171 4.171
22 C 0.304 3.696
23 O -0.438 6.438
24 N -0.366 5.366
25 C -0.030 4.030
26 C -0.040 4.040
27 H 0.080 0.920
28 H 0.150 0.850
29 H 0.142 0.858
30 H 0.135 0.865
31 H 0.239 0.761
32 H 0.107 0.893
33 H 0.097 0.903
34 H 0.123 0.877
35 H 0.126 0.874
36 H 0.238 0.762
37 H 0.089 0.911
38 H 0.105 0.895
39 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 12.741 -16.488 1.098 20.866
hybrid contribution 2.221 1.475 -0.486 2.710
sum 14.962 -15.013 0.612 21.205
Atomic orbital electron populations
1.69976 1.05905 1.27835 1.46803 1.25002 0.95129 0.99110 0.94312
0.86172 0.79243 0.80883 0.78999 1.20717 1.19767 1.19854 1.22782
0.94820 0.90161 1.59101 0.90672 1.83648 1.04008 0.97110 1.95199
1.22863 1.02948 1.01942 0.93933 1.22037 0.93760 0.93814 0.97733
1.21081 0.97821 0.98998 0.98175 1.21125 0.98843 0.98913 0.91914
1.19785 1.00926 1.03163 0.92302 1.18475 0.78759 0.77927 0.89237
1.90792 1.61832 1.60808 1.27187 1.45806 1.35626 1.47221 1.09286
1.21089 0.95361 0.91717 0.89159 0.88087 1.21981 1.01637 0.95640
0.97827 1.21588 1.01833 0.98130 0.95549 1.20212 0.81658 0.83076
0.84618 1.90776 1.41476 1.76632 1.34935 1.45388 1.50712 1.06900
1.33641 1.21848 0.93801 0.96349 0.91024 1.21920 0.91311 0.91212
0.99550 0.91956 0.85032 0.85816 0.86473 0.76105 0.89321 0.90317
0.87660 0.87444 0.76180 0.91085 0.89472 0.84263
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.97 13.22 55.49 0.73 -24.24 16
2 C 0.07 2.02 5.49 -17.46 -0.10 1.92 16
3 Si 0.92 20.94 29.55 -169.99 -5.02 15.91 16
4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16
5 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16
7 C -0.52 -14.32 9.46 30.91 0.29 -14.02 16
8 H 0.08 2.04 7.79 -52.49 -0.41 1.63 16
9 S -0.03 -0.86 21.41 -107.50 -2.30 -3.16 16
10 C -0.11 -2.16 5.45 -39.00 -0.21 -2.37 16
11 C -0.05 -0.89 9.79 -39.25 -0.38 -1.28 16
12 C -0.14 -1.85 10.02 -39.67 -0.40 -2.24 16
13 C -0.09 -1.06 9.54 -39.12 -0.37 -1.43 16
14 C -0.16 -2.33 5.87 -105.00 -0.62 -2.95 16
15 C 0.57 7.69 7.75 -12.32 -0.10 7.59 16
16 O -0.53 -9.13 16.00 5.32 0.09 -9.04 16
17 N -0.73 -6.25 5.03 -54.61 -0.27 -6.52 16
18 C 0.13 1.01 2.53 -67.79 -0.17 0.84 16
19 H 0.10 0.97 7.56 -51.93 -0.39 0.58 16
20 C -0.13 -0.65 5.51 -26.52 -0.15 -0.80 16
21 C -0.13 -0.80 6.03 -28.10 -0.17 -0.97 16
22 C 0.52 4.97 7.71 -11.87 -0.09 4.88 16
23 O -0.56 -7.73 17.78 5.56 0.10 -7.63 16
24 N -0.71 -5.81 5.45 -61.38 -0.33 -6.15 16
25 C 0.10 0.73 6.75 -4.48 -0.03 0.70 16
26 C -0.02 -0.34 9.34 -38.92 -0.36 -0.71 16
27 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16
28 H 0.13 2.20 8.06 -52.49 -0.42 1.77 16
29 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16
30 H 0.12 0.88 6.39 -52.49 -0.34 0.54 16
31 H 0.40 2.36 6.64 -40.82 -0.27 2.09 16
32 H 0.09 0.35 8.14 -51.92 -0.42 -0.08 16
33 H 0.08 0.31 8.13 -51.93 -0.42 -0.11 16
34 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16
35 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16
36 H 0.40 3.06 8.80 -40.82 -0.36 2.70 16
37 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16
38 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16
39 H 0.14 2.81 7.65 -52.48 -0.40 2.41 16
LS Contribution 349.13 15.07 5.26 5.26
Total: -1.00 -34.40 349.13 -9.30 -43.70
By element:
Atomic # 1 Polarization: 7.38 SS G_CDS: -4.69 Total: 2.69 kcal
Atomic # 6 Polarization: -7.98 SS G_CDS: -2.86 Total: -10.83 kcal
Atomic # 7 Polarization: -37.03 SS G_CDS: 0.12 Total: -36.91 kcal
Atomic # 8 Polarization: -16.85 SS G_CDS: 0.18 Total: -16.67 kcal
Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal
Atomic # 16 Polarization: -0.86 SS G_CDS: -2.30 Total: -3.16 kcal
Total LS contribution 5.26 Total: 5.26 kcal
Total: -34.40 -9.30 -43.70 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000079540067.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.780 kcal
(2) G-P(sol) polarization free energy of solvation -34.403 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.184 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.699 kcal
(6) G-S(sol) free energy of system = (1) + (5) -55.479 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds