Wall clock time and date at job start Tue Mar 31 2020 12:40:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31626 * 1
3 3 Si 1.86796 * 120.00332 * 2 1
4 4 H 1.48500 * 109.47090 * 359.97438 * 3 2 1
5 5 H 1.48492 * 109.47118 * 120.00066 * 3 2 1
6 6 H 1.48497 * 109.47159 * 240.00350 * 3 2 1
7 7 C 1.38731 * 119.99500 * 180.02562 * 2 1 3
8 8 H 1.07999 * 119.99675 * 180.02562 * 7 2 1
9 9 S 1.76199 * 120.00411 * 359.97438 * 7 2 1
10 10 C 1.76194 * 100.00178 * 174.89217 * 9 7 2
11 11 C 1.39221 * 120.01716 * 274.27076 * 10 9 7
12 12 C 1.38145 * 120.19882 * 179.69527 * 11 10 9
13 13 C 1.38080 * 120.24428 * 0.60392 * 12 11 10
14 14 C 1.39634 * 120.03467 * 359.67545 * 13 12 11
15 15 C 1.47868 * 120.09881 * 180.02562 * 14 13 12
16 16 O 1.21551 * 120.00165 * 179.97438 * 15 14 13
17 17 N 1.34774 * 119.99761 * 359.97203 * 15 14 13
18 18 C 1.46502 * 119.99774 * 180.02562 * 17 15 14
19 19 H 1.08994 * 109.60463 * 34.67799 * 18 17 15
20 20 C 1.53341 * 109.60344 * 155.00372 * 18 17 15
21 21 C 1.53069 * 108.42656 * 187.28912 * 20 18 17
22 22 C 1.50175 * 109.88800 * 311.09509 * 21 20 18
23 23 O 1.21281 * 118.24543 * 197.60668 * 22 21 20
24 24 N 1.33351 * 123.51204 * 17.58453 * 22 21 20
25 25 C 1.45756 * 124.10268 * 357.77657 * 24 22 21
26 26 C 1.38830 * 120.02391 * 94.54726 * 10 9 7
27 27 H 0.97003 * 119.99857 * 0.02562 * 1 2 3
28 28 H 1.07993 * 119.90243 * 359.97438 * 11 10 9
29 29 H 1.08002 * 119.87655 * 180.32307 * 12 11 10
30 30 H 1.07995 * 119.97993 * 179.70074 * 13 12 11
31 31 H 0.97004 * 120.00129 * 0.02562 * 17 15 14
32 32 H 1.09008 * 109.67542 * 307.02104 * 20 18 17
33 33 H 1.08997 * 109.68015 * 67.55113 * 20 18 17
34 34 H 1.08992 * 109.40569 * 71.22519 * 21 20 18
35 35 H 1.09008 * 109.40226 * 190.97435 * 21 20 18
36 36 H 0.97000 * 117.95534 * 177.77442 * 24 22 21
37 37 H 1.09006 * 109.30239 * 258.76228 * 25 24 22
38 38 H 1.09001 * 109.30047 * 139.38739 * 25 24 22
39 39 H 1.08008 * 120.12226 * 0.02562 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3163 0.0000 0.0000
3 14 2.2503 1.6176 0.0000
4 1 1.2854 2.7464 -0.0006
5 1 3.1041 1.6962 1.2124
6 1 3.1040 1.6963 -1.2125
7 6 2.0098 -1.2015 -0.0005
8 1 3.0898 -1.2015 -0.0001
9 16 1.1288 -2.7274 -0.0005
10 6 2.4724 -3.8566 -0.1558
11 6 2.9681 -4.1803 -1.4159
12 6 4.0255 -5.0603 -1.5416
13 6 4.5899 -5.6342 -0.4197
14 6 4.0969 -5.3211 0.8487
15 6 4.7005 -5.9344 2.0511
16 8 4.2703 -5.6602 3.1544
17 7 5.7278 -6.7976 1.9238
18 6 6.3255 -7.4057 3.1151
19 1 5.5527 -7.5795 3.8638
20 6 6.9846 -8.7377 2.7372
21 6 7.4377 -9.4350 4.0222
22 6 8.2040 -8.4722 4.8830
23 8 8.9042 -8.9227 5.7649
24 7 8.1561 -7.1484 4.7295
25 6 7.3960 -6.4739 3.6845
26 6 3.0338 -4.4284 0.9779
27 1 -0.4850 0.8401 -0.0004
28 1 2.5275 -3.7387 -2.2974
29 1 4.4093 -5.3038 -2.5213
30 1 5.4132 -6.3254 -0.5232
31 1 6.0713 -7.0161 1.0433
32 1 6.2658 -9.3669 2.2121
33 1 7.8468 -8.5519 2.0968
34 1 6.5644 -9.7923 4.5676
35 1 8.0763 -10.2815 3.7690
36 1 8.6584 -6.6000 5.3522
37 1 8.0726 -6.1714 2.8851
38 1 6.9176 -5.5879 4.1019
39 1 2.6482 -4.1828 1.9565
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000079540067.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:40:51
Heat of formation + Delta-G solvation = -81.140933 kcal
Electronic energy + Delta-G solvation = -23216.063230 eV
Core-core repulsion = 19633.974268 eV
Total energy + Delta-G solvation = -3582.088962 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.70466 -40.87463 -39.24008 -37.77211 -35.31422 -34.64568 -33.65175 -32.22177
-31.85708 -29.52412 -27.73530 -25.84279 -24.86944 -23.79937 -23.17390 -21.64481
-20.60698 -19.89589 -18.86045 -18.47014 -17.44066 -17.24748 -16.92519 -16.91836
-16.62581 -16.16802 -15.95477 -15.64195 -15.18733 -15.01467 -14.97024 -14.68745
-14.57973 -14.41838 -13.81640 -13.26357 -13.17158 -13.06550 -12.95501 -12.91004
-12.62436 -12.49910 -12.37110 -11.94286 -11.74426 -11.23189 -11.14063 -10.93028
-10.74028 -10.39107 -10.15490 -9.89023 -9.66884 -8.80735 -8.38406 -6.18678
-0.15995 0.28562 1.30438 1.39230 1.45935 1.55907 1.65334 1.76423
1.90229 2.24714 2.36955 2.82721 2.94547 3.43019 3.54508 3.55830
3.63165 3.76721 3.94868 3.97654 4.07859 4.24736 4.38422 4.41396
4.51492 4.56005 4.66136 4.74968 4.85105 4.95424 5.02027 5.10334
5.23725 5.29557 5.35735 5.39550 5.54313 5.69907 5.89299 6.16118
6.26190 6.46303 7.01716 7.11221 7.14105 8.68419
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.020625 B = 0.002584 C = 0.002429
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1357.235360 B =10831.274611 C =11523.212667
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.907 5.907
2 C 0.019 3.981
3 Si 0.992 3.008
4 H -0.273 1.273
5 H -0.269 1.269
6 H -0.261 1.261
7 C -0.535 4.535
8 H 0.068 0.932
9 S -0.102 6.102
10 C -0.129 4.129
11 C -0.065 4.065
12 C -0.123 4.123
13 C -0.058 4.058
14 C -0.156 4.156
15 C 0.568 3.432
16 O -0.576 6.576
17 N -0.696 5.696
18 C 0.130 3.870
19 H 0.078 0.922
20 C -0.119 4.119
21 C -0.127 4.127
22 C 0.511 3.489
23 O -0.609 6.609
24 N -0.709 5.709
25 C 0.098 3.902
26 C -0.044 4.044
27 H 0.274 0.726
28 H 0.127 0.873
29 H 0.174 0.826
30 H 0.181 0.819
31 H 0.423 0.577
32 H 0.110 0.890
33 H 0.101 0.899
34 H 0.110 0.890
35 H 0.124 0.876
36 H 0.403 0.597
37 H 0.094 0.906
38 H 0.067 0.933
39 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.625 -18.240 -2.460 25.483
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.186 4.186
3 Si 0.813 3.187
4 H -0.198 1.198
5 H -0.194 1.194
6 H -0.185 1.185
7 C -0.682 4.682
8 H 0.087 0.913
9 S 0.132 5.868
10 C -0.241 4.241
11 C -0.086 4.086
12 C -0.142 4.142
13 C -0.076 4.076
14 C -0.161 4.161
15 C 0.357 3.643
16 O -0.456 6.456
17 N -0.350 5.350
18 C 0.024 3.976
19 H 0.097 0.903
20 C -0.157 4.157
21 C -0.167 4.167
22 C 0.300 3.700
23 O -0.492 6.492
24 N -0.360 5.360
25 C -0.027 4.027
26 C -0.066 4.066
27 H 0.083 0.917
28 H 0.145 0.855
29 H 0.191 0.809
30 H 0.198 0.802
31 H 0.263 0.737
32 H 0.128 0.872
33 H 0.120 0.880
34 H 0.128 0.872
35 H 0.142 0.858
36 H 0.238 0.762
37 H 0.112 0.888
38 H 0.085 0.915
39 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges 16.194 -18.470 -1.326 24.599
hybrid contribution 1.253 1.922 0.283 2.311
sum 17.446 -16.548 -1.043 24.069
Atomic orbital electron populations
1.70109 1.07550 1.28833 1.47843 1.26010 0.96041 1.02881 0.93677
0.85098 0.78023 0.76164 0.79371 1.19782 1.19400 1.18503 1.23016
0.94628 0.91485 1.59040 0.91330 1.83557 1.08682 0.98779 1.95737
1.22453 1.02934 1.02529 0.96138 1.22076 0.95333 0.95296 0.95904
1.21558 0.95347 0.96400 1.00883 1.21756 0.98690 0.97597 0.89573
1.19921 0.99544 1.02035 0.94588 1.18335 0.79587 0.78436 0.87978
1.90788 1.63544 1.62571 1.28720 1.45499 1.33600 1.45086 1.10769
1.21175 0.94817 0.93250 0.88317 0.90339 1.21953 1.02661 0.93613
0.97434 1.21631 1.01750 0.97693 0.95580 1.20895 0.81150 0.83600
0.84357 1.90755 1.43810 1.77413 1.37195 1.45425 1.50125 1.06830
1.33600 1.21841 0.94078 0.95526 0.91254 1.21623 0.93665 0.93680
0.97642 0.91737 0.85517 0.80894 0.80170 0.73749 0.87153 0.88007
0.87158 0.85817 0.76191 0.88772 0.91486 0.87665
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -54.13 13.22 21.64 0.29 -53.84 16
2 C 0.02 1.08 5.49 84.84 0.47 1.54 16
3 Si 0.99 43.67 29.55 68.60 2.03 45.69 16
4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16
5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16
6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16
7 C -0.53 -30.74 9.46 67.94 0.64 -30.10 16
8 H 0.07 3.87 7.79 -2.91 -0.02 3.85 16
9 S -0.10 -5.50 21.41 -56.49 -1.21 -6.71 16
10 C -0.13 -5.45 5.45 22.65 0.12 -5.33 16
11 C -0.07 -2.16 9.79 22.48 0.22 -1.94 16
12 C -0.12 -2.61 10.02 22.21 0.22 -2.39 16
13 C -0.06 -1.05 9.54 22.57 0.22 -0.84 16
14 C -0.16 -4.32 5.87 -20.11 -0.12 -4.44 16
15 C 0.57 14.37 7.75 86.79 0.67 15.04 16
16 O -0.58 -20.24 16.00 -3.88 -0.06 -20.30 16
17 N -0.70 -9.08 5.03 -444.97 -2.24 -11.32 16
18 C 0.13 1.59 2.53 45.08 0.11 1.70 16
19 H 0.08 1.40 7.56 -2.39 -0.02 1.38 16
20 C -0.12 -0.60 5.51 30.73 0.17 -0.43 16
21 C -0.13 -1.17 6.03 29.71 0.18 -0.99 16
22 C 0.51 9.08 7.71 87.71 0.68 9.76 16
23 O -0.61 -16.64 17.78 -3.03 -0.05 -16.69 16
24 N -0.71 -10.61 5.45 -467.30 -2.55 -13.16 16
25 C 0.10 1.28 6.75 86.49 0.58 1.86 16
26 C -0.04 -1.73 9.34 22.70 0.21 -1.51 16
27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16
28 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16
29 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16
30 H 0.18 1.06 6.39 -2.91 -0.02 1.05 16
31 H 0.42 2.09 6.64 -92.71 -0.62 1.48 16
32 H 0.11 0.20 8.14 -2.38 -0.02 0.18 16
33 H 0.10 0.14 8.13 -2.39 -0.02 0.13 16
34 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16
35 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16
36 H 0.40 5.93 8.80 -92.71 -0.82 5.11 16
37 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16
38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16
39 H 0.11 4.70 7.65 -2.91 -0.02 4.68 16
Total: -1.00 -84.18 349.13 0.26 -83.92
By element:
Atomic # 1 Polarization: 10.78 SS G_CDS: -0.33 Total: 10.45 kcal
Atomic # 6 Polarization: -22.44 SS G_CDS: 4.38 Total: -18.06 kcal
Atomic # 7 Polarization: -73.82 SS G_CDS: -4.50 Total: -78.32 kcal
Atomic # 8 Polarization: -36.88 SS G_CDS: -0.12 Total: -36.99 kcal
Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal
Atomic # 16 Polarization: -5.50 SS G_CDS: -1.21 Total: -6.71 kcal
Total: -84.18 0.26 -83.92 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000079540067.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 2.782 kcal
(2) G-P(sol) polarization free energy of solvation -84.179 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.397 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.923 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.141 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds