Wall clock time and date at job start Tue Mar 31 2020 12:16:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31412 * 1
3 3 Si 1.86806 * 119.99854 * 2 1
4 4 H 1.48500 * 109.46700 * 269.99898 * 3 2 1
5 5 H 1.48501 * 109.47261 * 29.99915 * 3 2 1
6 6 H 1.48497 * 109.46782 * 150.00389 * 3 2 1
7 7 C 1.38948 * 120.00007 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99622 * 179.97438 * 7 2 1
9 9 N 1.37092 * 119.99977 * 0.02562 * 7 2 1
10 10 C 1.34779 * 120.00075 * 180.02562 * 9 7 2
11 11 O 1.21294 * 119.99863 * 359.97438 * 10 9 7
12 12 C 1.50698 * 119.99948 * 179.97438 * 10 9 7
13 13 C 1.52999 * 109.46930 * 179.97438 * 12 10 9
14 14 C 1.50702 * 109.47260 * 179.97438 * 13 12 10
15 15 O 1.21302 * 119.99851 * 5.47460 * 14 13 12
16 16 N 1.34778 * 120.00073 * 185.46744 * 14 13 12
17 17 C 1.45997 * 118.60939 * 353.42409 * 16 14 13
18 18 C 1.53580 * 108.63510 * 233.76769 * 17 16 14
19 19 S 1.81671 * 107.82633 * 294.21361 * 18 17 16
20 20 C 1.76392 * 102.56870 * 47.13318 * 19 18 17
21 21 C 1.39078 * 118.87252 * 163.83988 * 20 19 18
22 22 C 1.38060 * 120.29677 * 179.35864 * 21 20 19
23 23 C 1.38305 * 119.90723 * 359.96577 * 22 21 20
24 24 C 1.37987 * 120.17678 * 0.18283 * 23 22 21
25 25 C 1.39083 * 121.19226 * 343.51979 * 20 19 18
26 26 H 0.97002 * 119.99923 * 0.02562 * 1 2 3
27 27 H 0.97001 * 119.99881 * 359.97438 * 9 7 2
28 28 H 1.09007 * 109.47271 * 59.99926 * 12 10 9
29 29 H 1.08999 * 109.47180 * 299.99542 * 12 10 9
30 30 H 1.08999 * 109.47134 * 59.99987 * 13 12 10
31 31 H 1.08999 * 109.47724 * 300.00071 * 13 12 10
32 32 H 1.08994 * 109.60836 * 353.51717 * 17 16 14
33 33 H 1.09004 * 109.60805 * 114.02041 * 17 16 14
34 34 H 1.08989 * 109.79258 * 53.80656 * 18 17 16
35 35 H 1.09005 * 109.78474 * 174.58545 * 18 17 16
36 36 H 1.08008 * 119.85133 * 359.30898 * 21 20 19
37 37 H 1.07997 * 120.04702 * 179.97438 * 22 21 20
38 38 H 1.07998 * 119.90732 * 180.20432 * 23 22 21
39 39 H 1.07994 * 119.77366 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4455 2.6528 0.7000
6 1 3.5457 1.4402 0.7000
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2033 0.0001
9 7 1.3234 -2.3906 0.0005
10 6 1.9973 -3.5578 0.0016
11 8 3.2102 -3.5578 0.0021
12 6 1.2438 -4.8629 0.0022
13 6 2.2380 -6.0258 0.0027
14 6 1.4845 -7.3309 0.0039
15 8 0.2756 -7.3334 -0.0959
16 7 2.1539 -8.4954 0.1157
17 6 3.6133 -8.4683 0.0875
18 6 4.1012 -9.4382 -0.9988
19 16 3.6477 -11.1211 -0.4862
20 6 1.9624 -10.9334 -0.0004
21 6 1.1718 -12.0696 0.1343
22 6 -0.1474 -11.9577 0.5258
23 6 -0.6861 -10.7108 0.7862
24 6 0.0903 -9.5780 0.6520
25 6 1.4216 -9.6774 0.2534
26 1 -0.4850 0.8401 -0.0004
27 1 0.3534 -2.3906 0.0005
28 1 0.6174 -4.9212 -0.8881
29 1 0.6168 -4.9200 0.8920
30 1 2.8647 -5.9676 0.8926
31 1 2.8647 -5.9685 -0.8873
32 1 3.9561 -7.4595 -0.1421
33 1 4.0038 -8.7782 1.0568
34 1 3.6223 -9.2000 -1.9484
35 1 5.1837 -9.3622 -1.1022
36 1 1.5915 -13.0438 -0.0690
37 1 -0.7578 -12.8427 0.6287
38 1 -1.7171 -10.6236 1.0956
39 1 -0.3368 -8.6077 0.8574
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000106435175.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:16:26
Heat of formation + Delta-G solvation = -29.905148 kcal
Electronic energy + Delta-G solvation = -23740.558568 eV
Core-core repulsion = 20160.691356 eV
Total energy + Delta-G solvation = -3579.867212 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.25743 -38.72894 -38.06924 -36.58823 -34.13824 -32.70805 -31.59800 -31.24920
-31.06050 -29.79110 -26.24680 -24.35497 -24.11471 -23.09744 -22.23969 -19.82102
-19.06654 -17.97856 -17.90911 -17.46909 -17.17990 -16.37639 -15.93051 -15.47557
-14.95846 -14.83569 -14.49533 -14.43713 -14.00978 -13.83705 -13.75074 -13.49132
-13.32018 -12.97614 -12.83176 -12.41627 -12.34892 -11.92570 -11.67629 -11.52861
-11.32977 -11.15778 -10.82037 -10.61123 -10.44523 -10.43193 -10.26426 -9.79737
-9.57450 -9.55156 -8.49528 -8.33885 -8.03334 -7.59498 -6.46549 -3.88110
0.91706 1.16353 1.25394 2.02574 2.38162 2.44911 3.14107 3.23457
3.28811 3.57058 3.84115 4.06983 4.16984 4.21206 4.60122 4.65803
4.71037 4.86473 4.92530 5.07108 5.10792 5.17429 5.26360 5.29126
5.33057 5.36553 5.40574 5.72282 5.78025 5.89221 6.09695 6.20215
6.24836 6.30836 6.33678 6.41604 6.82862 6.92268 7.50182 7.82596
7.99584 8.53370 9.11039 9.48287 9.97892 10.70786
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.026908 B = 0.002563 C = 0.002358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.346750 B =10922.625071 C =11873.105267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.898 5.898
2 C 0.023 3.977
3 Si 0.931 3.069
4 H -0.277 1.277
5 H -0.283 1.283
6 H -0.269 1.269
7 C -0.304 4.304
8 H 0.104 0.896
9 N -0.557 5.557
10 C 0.438 3.562
11 O -0.603 6.603
12 C -0.116 4.116
13 C -0.116 4.116
14 C 0.513 3.487
15 O -0.506 6.506
16 N -0.561 5.561
17 C 0.095 3.905
18 C -0.124 4.124
19 S -0.118 6.118
20 C -0.120 4.120
21 C -0.081 4.081
22 C -0.129 4.129
23 C -0.100 4.100
24 C -0.135 4.135
25 C 0.156 3.844
26 H 0.273 0.727
27 H 0.395 0.605
28 H 0.086 0.914
29 H 0.084 0.916
30 H 0.104 0.896
31 H 0.105 0.895
32 H 0.120 0.880
33 H 0.093 0.907
34 H 0.098 0.902
35 H 0.129 0.871
36 H 0.128 0.872
37 H 0.126 0.874
38 H 0.127 0.873
39 H 0.170 0.830
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.804 -22.489 0.378 22.667
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.539 5.539
2 C -0.179 4.179
3 Si 0.758 3.242
4 H -0.203 1.203
5 H -0.209 1.209
6 H -0.194 1.194
7 C -0.433 4.433
8 H 0.122 0.878
9 N -0.192 5.192
10 C 0.224 3.776
11 O -0.490 6.490
12 C -0.157 4.157
13 C -0.156 4.156
14 C 0.305 3.695
15 O -0.382 6.382
16 N -0.285 5.285
17 C -0.029 4.029
18 C -0.273 4.273
19 S 0.123 5.877
20 C -0.235 4.235
21 C -0.104 4.104
22 C -0.150 4.150
23 C -0.121 4.121
24 C -0.156 4.156
25 C 0.056 3.944
26 H 0.083 0.917
27 H 0.228 0.772
28 H 0.105 0.895
29 H 0.103 0.897
30 H 0.122 0.878
31 H 0.124 0.876
32 H 0.138 0.862
33 H 0.111 0.889
34 H 0.116 0.884
35 H 0.147 0.853
36 H 0.146 0.854
37 H 0.144 0.856
38 H 0.145 0.855
39 H 0.187 0.813
Dipole moment (debyes) X Y Z Total
from point charges 3.681 -23.169 0.267 23.461
hybrid contribution -0.927 1.811 -0.077 2.036
sum 2.755 -21.358 0.189 21.536
Atomic orbital electron populations
1.69618 1.05985 1.28327 1.49941 1.25302 0.95639 0.99845 0.97090
0.85849 0.79230 0.80724 0.78434 1.20343 1.20856 1.19376 1.19720
0.93393 0.82255 1.47952 0.87839 1.41893 1.09404 1.04671 1.63237
1.19811 0.88147 0.84969 0.84662 1.90500 1.13906 1.87515 1.57065
1.21229 0.97875 0.92264 1.04356 1.21430 0.99131 0.89161 1.05875
1.21436 0.88271 0.85370 0.74455 1.90534 1.14376 1.86668 1.46594
1.45531 1.07098 1.05561 1.70336 1.22135 0.78467 1.02696 0.99636
1.24104 1.06331 0.94787 1.02042 1.85438 1.06825 1.14426 1.81049
1.21145 0.98219 0.94707 1.09428 1.20642 0.93395 0.96437 0.99970
1.21050 0.94732 0.97857 1.01360 1.21157 1.00015 0.91967 0.98953
1.22300 0.92305 1.01996 0.98975 1.17568 0.92513 0.84608 0.99698
0.91730 0.77199 0.89521 0.89730 0.87756 0.87649 0.86160 0.88908
0.88370 0.85263 0.85372 0.85571 0.85468 0.81320
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -24.33 13.05 55.50 0.72 -23.60 16
2 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16
3 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16
4 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16
5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16
6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16
7 C -0.30 -8.33 9.68 -14.94 -0.14 -8.48 16
8 H 0.10 2.95 7.16 -52.49 -0.38 2.58 16
9 N -0.56 -13.96 5.29 -10.97 -0.06 -14.02 16
10 C 0.44 9.92 7.78 -10.99 -0.09 9.84 16
11 O -0.60 -15.26 15.56 5.55 0.09 -15.17 16
12 C -0.12 -2.00 5.01 -27.88 -0.14 -2.14 16
13 C -0.12 -1.64 3.28 -27.88 -0.09 -1.73 16
14 C 0.51 7.17 7.41 -10.98 -0.08 7.08 16
15 O -0.51 -8.28 12.45 5.54 0.07 -8.21 16
16 N -0.56 -6.85 2.87 -113.36 -0.33 -7.17 16
17 C 0.09 0.85 6.05 -4.01 -0.02 0.83 16
18 C -0.12 -1.00 6.68 37.46 0.25 -0.75 16
19 S -0.12 -1.18 22.12 -107.50 -2.38 -3.56 16
20 C -0.12 -1.42 6.07 -38.96 -0.24 -1.66 16
21 C -0.08 -0.84 9.72 -39.34 -0.38 -1.23 16
22 C -0.13 -1.25 10.05 -39.62 -0.40 -1.65 16
23 C -0.10 -1.09 10.03 -39.65 -0.40 -1.49 16
24 C -0.13 -1.79 8.60 -39.27 -0.34 -2.13 16
25 C 0.16 2.04 6.31 -83.54 -0.53 1.51 16
26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16
27 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16
28 H 0.09 1.46 8.04 -51.93 -0.42 1.04 16
29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16
30 H 0.10 1.40 7.82 -51.93 -0.41 1.00 16
31 H 0.11 1.41 7.55 -51.93 -0.39 1.02 16
32 H 0.12 0.96 5.69 -51.93 -0.30 0.66 16
33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16
34 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16
35 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16
36 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16
37 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16
38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16
39 H 0.17 2.48 5.01 -54.43 -0.27 2.21 16
LS Contribution 338.58 15.07 5.10 5.10
Total: -1.00 -32.12 338.58 -9.07 -41.19
By element:
Atomic # 1 Polarization: 15.78 SS G_CDS: -4.58 Total: 11.21 kcal
Atomic # 6 Polarization: 1.23 SS G_CDS: -2.69 Total: -1.46 kcal
Atomic # 7 Polarization: -45.13 SS G_CDS: 0.34 Total: -44.79 kcal
Atomic # 8 Polarization: -23.54 SS G_CDS: 0.16 Total: -23.38 kcal
Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal
Atomic # 16 Polarization: -1.18 SS G_CDS: -2.38 Total: -3.56 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -32.12 -9.07 -41.19 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000106435175.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.288 kcal
(2) G-P(sol) polarization free energy of solvation -32.122 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.834 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.193 kcal
(6) G-S(sol) free energy of system = (1) + (5) -29.905 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds