Wall clock time and date at job start Tue Mar 31 2020 12:16:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31412 * 1
3 3 Si 1.86806 * 119.99854 * 2 1
4 4 H 1.48500 * 109.46700 * 269.99898 * 3 2 1
5 5 H 1.48501 * 109.47261 * 29.99915 * 3 2 1
6 6 H 1.48497 * 109.46782 * 150.00389 * 3 2 1
7 7 C 1.38948 * 120.00007 * 179.97438 * 2 1 3
8 8 H 1.07999 * 119.99622 * 179.97438 * 7 2 1
9 9 N 1.37092 * 119.99977 * 0.02562 * 7 2 1
10 10 C 1.34779 * 120.00075 * 180.02562 * 9 7 2
11 11 O 1.21294 * 119.99863 * 359.97438 * 10 9 7
12 12 C 1.50698 * 119.99948 * 179.97438 * 10 9 7
13 13 C 1.52999 * 109.46930 * 179.97438 * 12 10 9
14 14 C 1.50702 * 109.47260 * 179.97438 * 13 12 10
15 15 O 1.21302 * 119.99851 * 5.47460 * 14 13 12
16 16 N 1.34778 * 120.00073 * 185.46744 * 14 13 12
17 17 C 1.45997 * 118.60939 * 353.42409 * 16 14 13
18 18 C 1.53580 * 108.63510 * 233.76769 * 17 16 14
19 19 S 1.81671 * 107.82633 * 294.21361 * 18 17 16
20 20 C 1.76392 * 102.56870 * 47.13318 * 19 18 17
21 21 C 1.39078 * 118.87252 * 163.83988 * 20 19 18
22 22 C 1.38060 * 120.29677 * 179.35864 * 21 20 19
23 23 C 1.38305 * 119.90723 * 359.96577 * 22 21 20
24 24 C 1.37987 * 120.17678 * 0.18283 * 23 22 21
25 25 C 1.39083 * 121.19226 * 343.51979 * 20 19 18
26 26 H 0.97002 * 119.99923 * 0.02562 * 1 2 3
27 27 H 0.97001 * 119.99881 * 359.97438 * 9 7 2
28 28 H 1.09007 * 109.47271 * 59.99926 * 12 10 9
29 29 H 1.08999 * 109.47180 * 299.99542 * 12 10 9
30 30 H 1.08999 * 109.47134 * 59.99987 * 13 12 10
31 31 H 1.08999 * 109.47724 * 300.00071 * 13 12 10
32 32 H 1.08994 * 109.60836 * 353.51717 * 17 16 14
33 33 H 1.09004 * 109.60805 * 114.02041 * 17 16 14
34 34 H 1.08989 * 109.79258 * 53.80656 * 18 17 16
35 35 H 1.09005 * 109.78474 * 174.58545 * 18 17 16
36 36 H 1.08008 * 119.85133 * 359.30898 * 21 20 19
37 37 H 1.07997 * 120.04702 * 179.97438 * 22 21 20
38 38 H 1.07998 * 119.90732 * 180.20432 * 23 22 21
39 39 H 1.07994 * 119.77366 * 180.02562 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2481 1.6178 0.0000
4 1 2.4956 2.0464 -1.4001
5 1 1.4455 2.6528 0.7000
6 1 3.5457 1.4402 0.7000
7 6 2.0089 -1.2033 0.0005
8 1 3.0889 -1.2033 0.0001
9 7 1.3234 -2.3906 0.0005
10 6 1.9973 -3.5578 0.0016
11 8 3.2102 -3.5578 0.0021
12 6 1.2438 -4.8629 0.0022
13 6 2.2380 -6.0258 0.0027
14 6 1.4845 -7.3309 0.0039
15 8 0.2756 -7.3334 -0.0959
16 7 2.1539 -8.4954 0.1157
17 6 3.6133 -8.4683 0.0875
18 6 4.1012 -9.4382 -0.9988
19 16 3.6477 -11.1211 -0.4862
20 6 1.9624 -10.9334 -0.0004
21 6 1.1718 -12.0696 0.1343
22 6 -0.1474 -11.9577 0.5258
23 6 -0.6861 -10.7108 0.7862
24 6 0.0903 -9.5780 0.6520
25 6 1.4216 -9.6774 0.2534
26 1 -0.4850 0.8401 -0.0004
27 1 0.3534 -2.3906 0.0005
28 1 0.6174 -4.9212 -0.8881
29 1 0.6168 -4.9200 0.8920
30 1 2.8647 -5.9676 0.8926
31 1 2.8647 -5.9685 -0.8873
32 1 3.9561 -7.4595 -0.1421
33 1 4.0038 -8.7782 1.0568
34 1 3.6223 -9.2000 -1.9484
35 1 5.1837 -9.3622 -1.1022
36 1 1.5915 -13.0438 -0.0690
37 1 -0.7578 -12.8427 0.6287
38 1 -1.7171 -10.6236 1.0956
39 1 -0.3368 -8.6077 0.8574
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000106435175.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:16:25
Heat of formation + Delta-G solvation = -49.234368 kcal
Electronic energy + Delta-G solvation = -23741.396746 eV
Core-core repulsion = 20160.691356 eV
Total energy + Delta-G solvation = -3580.705390 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-42.24507 -40.21220 -39.36563 -37.50776 -36.07912 -34.04304 -33.23746 -32.41845
-31.88974 -30.75130 -27.83831 -25.90624 -24.93226 -24.02376 -23.21148 -21.14881
-20.53433 -19.85867 -18.77472 -18.65837 -18.08453 -17.41857 -17.35271 -16.57308
-16.44062 -16.00810 -15.85474 -15.73207 -15.49736 -14.86186 -14.73863 -14.51714
-14.23669 -14.06982 -13.90672 -13.68441 -13.53350 -13.45055 -12.93359 -12.92349
-12.71143 -12.41931 -12.20545 -12.14309 -12.11261 -11.52079 -11.39908 -11.31316
-10.63744 -10.57131 -10.39965 -10.04293 -9.22008 -8.47870 -8.38938 -5.97494
0.05886 0.30212 0.49528 1.25565 1.37362 1.37917 1.42046 1.52044
1.55939 2.01354 2.29370 2.71844 3.00832 3.19687 3.43089 3.47338
3.74797 3.88140 3.98901 4.04009 4.10083 4.13061 4.36473 4.37034
4.42648 4.47624 4.51053 4.67301 4.70736 4.84774 4.88325 4.95593
5.02954 5.29195 5.40311 5.45039 5.55870 5.93208 5.97073 6.01628
6.54753 6.78945 7.08937 7.52904 8.05239 8.69595
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.026908 B = 0.002563 C = 0.002358
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1040.346750 B =10922.625071 C =11873.105267
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.922 5.922
2 C -0.015 4.015
3 Si 0.995 3.005
4 H -0.271 1.271
5 H -0.273 1.273
6 H -0.269 1.269
7 C -0.335 4.335
8 H 0.085 0.915
9 N -0.572 5.572
10 C 0.442 3.558
11 O -0.628 6.628
12 C -0.105 4.105
13 C -0.107 4.107
14 C 0.516 3.484
15 O -0.536 6.536
16 N -0.557 5.557
17 C 0.088 3.912
18 C -0.118 4.118
19 S -0.119 6.119
20 C -0.133 4.133
21 C -0.086 4.086
22 C -0.122 4.122
23 C -0.106 4.106
24 C -0.159 4.159
25 C 0.132 3.868
26 H 0.278 0.722
27 H 0.396 0.604
28 H 0.093 0.907
29 H 0.093 0.907
30 H 0.113 0.887
31 H 0.115 0.885
32 H 0.132 0.868
33 H 0.103 0.897
34 H 0.093 0.907
35 H 0.160 0.840
36 H 0.148 0.852
37 H 0.158 0.842
38 H 0.145 0.855
39 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.553 -23.742 0.271 24.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.563 5.563
2 C -0.215 4.215
3 Si 0.818 3.182
4 H -0.196 1.196
5 H -0.198 1.198
6 H -0.194 1.194
7 C -0.464 4.464
8 H 0.103 0.897
9 N -0.208 5.208
10 C 0.230 3.770
11 O -0.516 6.516
12 C -0.145 4.145
13 C -0.147 4.147
14 C 0.308 3.692
15 O -0.414 6.414
16 N -0.281 5.281
17 C -0.035 4.035
18 C -0.267 4.267
19 S 0.123 5.877
20 C -0.248 4.248
21 C -0.110 4.110
22 C -0.142 4.142
23 C -0.126 4.126
24 C -0.180 4.180
25 C 0.032 3.968
26 H 0.087 0.913
27 H 0.229 0.771
28 H 0.111 0.889
29 H 0.111 0.889
30 H 0.131 0.869
31 H 0.133 0.867
32 H 0.150 0.850
33 H 0.121 0.879
34 H 0.112 0.888
35 H 0.177 0.823
36 H 0.166 0.834
37 H 0.176 0.824
38 H 0.162 0.838
39 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 4.444 -24.459 0.160 24.860
hybrid contribution -1.148 2.068 -0.038 2.366
sum 3.295 -22.391 0.122 22.632
Atomic orbital electron populations
1.69692 1.07046 1.29392 1.50134 1.26121 0.96518 1.02700 0.96164
0.84895 0.77947 0.76637 0.78683 1.19597 1.19777 1.19358 1.19740
0.92900 0.83856 1.49932 0.89678 1.42006 1.09451 1.04974 1.64373
1.20675 0.88066 0.85994 0.82305 1.90473 1.15340 1.88194 1.57599
1.21121 0.98095 0.90260 1.05046 1.21330 0.98375 0.88169 1.06812
1.21263 0.87791 0.85776 0.74377 1.90541 1.15517 1.87127 1.48218
1.45530 1.08209 1.04848 1.69483 1.22390 0.76721 1.03753 1.00639
1.24196 1.08066 0.93180 1.01209 1.85388 1.05564 1.15901 1.80884
1.21420 0.99471 0.94590 1.09290 1.21023 0.93714 0.96917 0.99306
1.21420 0.94806 0.98388 0.99625 1.21420 1.00720 0.91900 0.98607
1.22273 0.93109 1.02065 1.00571 1.17736 0.92777 0.85260 1.01005
0.91281 0.77077 0.88902 0.88881 0.86891 0.86700 0.85020 0.87928
0.88838 0.82257 0.83388 0.82402 0.83758 0.83271
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -50.08 13.05 21.66 0.28 -49.79 16
2 C -0.02 -0.81 5.50 84.93 0.47 -0.34 16
3 Si 1.00 42.30 29.55 68.60 2.03 44.33 16
4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16
5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16
6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16
7 C -0.33 -18.70 9.68 84.04 0.81 -17.88 16
8 H 0.09 4.97 7.16 -2.91 -0.02 4.95 16
9 N -0.57 -29.21 5.29 -306.99 -1.62 -30.84 16
10 C 0.44 20.16 7.78 87.66 0.68 20.85 16
11 O -0.63 -31.92 15.56 -3.07 -0.05 -31.97 16
12 C -0.10 -3.58 5.01 29.85 0.15 -3.43 16
13 C -0.11 -2.94 3.28 29.85 0.10 -2.84 16
14 C 0.52 14.32 7.41 87.66 0.65 14.97 16
15 O -0.54 -17.84 12.45 -3.10 -0.04 -17.88 16
16 N -0.56 -13.27 2.87 -630.93 -1.81 -15.08 16
17 C 0.09 1.44 6.05 86.67 0.52 1.97 16
18 C -0.12 -1.67 6.68 72.18 0.48 -1.18 16
19 S -0.12 -2.15 22.12 -56.49 -1.25 -3.40 16
20 C -0.13 -2.99 6.07 22.67 0.14 -2.85 16
21 C -0.09 -1.63 9.72 22.43 0.22 -1.42 16
22 C -0.12 -2.11 10.05 22.24 0.22 -1.88 16
23 C -0.11 -2.22 10.03 22.23 0.22 -1.99 16
24 C -0.16 -4.26 8.60 22.47 0.19 -4.07 16
25 C 0.13 3.39 6.31 38.34 0.24 3.64 16
26 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16
27 H 0.40 19.65 7.90 -92.71 -0.73 18.92 16
28 H 0.09 3.11 8.04 -2.38 -0.02 3.09 16
29 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16
30 H 0.11 2.92 7.82 -2.39 -0.02 2.90 16
31 H 0.11 2.95 7.55 -2.39 -0.02 2.93 16
32 H 0.13 1.85 5.69 -2.39 -0.01 1.83 16
33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16
34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.16 1.27 8.14 -2.38 -0.02 1.26 16
36 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16
37 H 0.16 1.66 8.06 -2.91 -0.02 1.63 16
38 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16
39 H 0.15 4.58 5.01 -33.61 -0.17 4.41 16
Total: -1.00 -69.70 338.58 2.86 -66.84
By element:
Atomic # 1 Polarization: 34.05 SS G_CDS: 0.21 Total: 34.26 kcal
Atomic # 6 Polarization: -1.58 SS G_CDS: 5.10 Total: 3.52 kcal
Atomic # 7 Polarization: -92.56 SS G_CDS: -3.15 Total: -95.71 kcal
Atomic # 8 Polarization: -49.76 SS G_CDS: -0.09 Total: -49.85 kcal
Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal
Atomic # 16 Polarization: -2.15 SS G_CDS: -1.25 Total: -3.40 kcal
Total: -69.70 2.86 -66.84 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000106435175.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 17.609 kcal
(2) G-P(sol) polarization free energy of solvation -69.699 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.090 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.234 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds