Wall clock time and date at job start Tue Mar 31 2020 13:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34375 * 125.44406 * 2 1 4 4 C 1.46783 * 106.55773 * 179.97438 * 3 2 1 5 5 C 1.47086 * 126.97037 * 179.74046 * 4 3 2 6 6 O 1.21551 * 120.00242 * 180.02562 * 5 4 3 7 7 O 1.34795 * 119.99964 * 0.02943 * 5 4 3 8 8 C 1.45201 * 117.00003 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46929 * 30.00098 * 8 7 5 10 10 C 1.52998 * 109.46884 * 269.99644 * 8 7 5 11 11 C 1.50707 * 109.46909 * 149.99662 * 8 7 5 12 12 H 1.08001 * 120.00021 * 35.29354 * 11 8 7 13 13 C 1.37879 * 119.99952 * 215.28627 * 11 8 7 14 14 N 1.31509 * 120.00040 * 185.82687 * 13 11 8 15 15 Si 1.86801 * 119.99824 * 5.83132 * 13 11 8 16 16 H 1.48502 * 109.46985 * 84.90248 * 15 13 11 17 17 H 1.48503 * 109.47175 * 204.90257 * 15 13 11 18 18 H 1.48498 * 109.47093 * 324.90209 * 15 13 11 19 19 C 1.37840 * 106.06138 * 0.02562 * 4 3 2 20 20 C 1.50701 * 125.95519 * 179.97438 * 19 4 3 21 21 N 1.35496 * 108.09344 * 359.97438 * 19 4 3 22 22 C 1.39363 * 124.90875 * 179.97438 * 21 19 4 23 23 N 1.29571 * 124.93904 * 227.33942 * 22 21 19 24 24 C 1.31880 * 116.96140 * 179.81595 * 23 22 21 25 25 C 1.33544 * 114.55533 * 0.47215 * 24 23 22 26 26 S 1.70965 * 124.94047 * 47.64478 * 22 21 19 27 27 H 1.09000 * 109.47813 * 89.90691 * 1 2 3 28 28 H 1.09007 * 109.47161 * 209.91048 * 1 2 3 29 29 H 1.09003 * 109.46821 * 329.90139 * 1 2 3 30 30 H 1.07995 * 126.72242 * 359.97438 * 3 2 1 31 31 H 1.08995 * 109.47511 * 305.17763 * 10 8 7 32 32 H 1.09001 * 109.46847 * 65.18229 * 10 8 7 33 33 H 1.09010 * 109.46768 * 185.17887 * 10 8 7 34 34 H 0.97000 * 120.00241 * 180.02562 * 14 13 11 35 35 H 1.08992 * 109.47229 * 90.01916 * 20 19 4 36 36 H 1.09003 * 109.47393 * 210.02412 * 20 19 4 37 37 H 1.09005 * 109.46477 * 330.01989 * 20 19 4 38 38 H 1.08001 * 122.72571 * 180.26923 * 24 23 22 39 39 H 1.08002 * 125.98201 * 179.77454 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2862 1.0947 0.0000 4 6 3.6750 0.6196 0.0006 5 6 4.8924 1.4451 -0.0045 6 8 5.9862 0.9151 -0.0037 7 8 4.7950 2.7896 -0.0099 8 6 6.0377 3.5405 -0.0141 9 1 6.8084 2.9646 -0.5263 10 6 6.4755 3.8102 1.4269 11 6 5.8305 4.8505 -0.7298 12 1 4.8869 5.3689 -0.6449 13 6 6.8458 5.3873 -1.4929 14 7 6.7080 6.5827 -2.0234 15 14 8.4169 4.4164 -1.7731 16 1 8.2306 3.4942 -2.9221 17 1 9.5319 5.3526 -2.0655 18 1 8.7371 3.6305 -0.5545 19 6 3.6071 -0.7571 0.0004 20 6 4.7819 -1.7010 0.0003 21 7 2.3000 -1.1139 0.0002 22 6 1.8316 -2.4265 -0.0006 23 7 0.9042 -2.8830 -0.7819 24 6 0.5846 -4.1557 -0.6506 25 6 1.2689 -4.8050 0.2947 26 16 2.3918 -3.6667 1.0343 27 1 -0.3635 0.0017 -1.0276 28 1 -0.3634 -0.8908 0.5125 29 1 -0.3633 0.8891 0.5154 30 1 1.9555 2.1228 -0.0004 31 1 5.6675 4.3053 1.9655 32 1 6.7139 2.8662 1.9169 33 1 7.3571 4.4513 1.4248 34 1 7.4221 6.9601 -2.5606 35 1 5.0649 -1.9290 1.0278 36 1 4.5079 -2.6221 -0.5141 37 1 5.6227 -1.2344 -0.5132 38 1 -0.1715 -4.6333 -1.2561 39 1 1.1542 -5.8459 0.5591 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113692600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:30 Heat of formation + Delta-G solvation = 12.051773 kcal Electronic energy + Delta-G solvation = -24089.491610 eV Core-core repulsion = 20511.443787 eV Total energy + Delta-G solvation = -3578.047824 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.85107 -39.87438 -39.05347 -35.67361 -33.25464 -32.89093 -32.72030 -30.54530 -29.61425 -29.22838 -25.88699 -25.32258 -24.93833 -22.96908 -21.77874 -20.73907 -19.64543 -19.29199 -17.88441 -17.28148 -16.81943 -16.10068 -15.94456 -15.61903 -15.21825 -14.92367 -14.49408 -14.12678 -13.93423 -13.58064 -13.31895 -13.28941 -12.81729 -12.67305 -12.54177 -12.35634 -12.26266 -12.23140 -12.00967 -11.64667 -11.49479 -11.02137 -10.92368 -10.65985 -10.32747 -10.07234 -9.94555 -9.70585 -9.65528 -9.37763 -9.04190 -8.65604 -8.58245 -8.10038 -6.21907 -4.24963 -0.01980 0.45030 1.10328 1.62822 2.19035 2.21467 2.56846 3.26096 3.33614 3.39881 3.74696 3.81056 3.97048 4.32017 4.58790 4.68120 4.71503 4.90576 4.99556 5.12570 5.19684 5.40089 5.47859 5.51883 5.57666 5.64204 5.78351 5.88250 5.97179 6.20483 6.27072 6.53343 6.59585 6.68672 6.72225 6.81336 6.99046 7.21909 7.22639 7.46596 7.61387 8.32561 8.77614 8.91026 9.38015 10.89578 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.025021 B = 0.003117 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.782376 B = 8980.816804 C = 9479.086703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.024 3.976 3 C -0.126 4.126 4 C -0.180 4.180 5 C 0.529 3.471 6 O -0.533 6.533 7 O -0.339 6.339 8 C 0.182 3.818 9 H 0.047 0.953 10 C -0.153 4.153 11 C -0.516 4.516 12 H 0.086 0.914 13 C 0.082 3.918 14 N -0.883 5.883 15 Si 0.869 3.131 16 H -0.270 1.270 17 H -0.282 1.282 18 H -0.260 1.260 19 C 0.099 3.901 20 C -0.099 4.099 21 N -0.372 5.372 22 C 0.244 3.756 23 N -0.472 5.472 24 C 0.056 3.944 25 C -0.261 4.261 26 S 0.177 5.823 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.164 0.836 31 H 0.055 0.945 32 H 0.030 0.970 33 H 0.063 0.937 34 H 0.269 0.731 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.186 0.814 39 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.347 -23.779 6.497 27.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.081 4.081 3 C -0.150 4.150 4 C -0.188 4.188 5 C 0.375 3.625 6 O -0.426 6.426 7 O -0.254 6.254 8 C 0.129 3.871 9 H 0.065 0.935 10 C -0.211 4.211 11 C -0.553 4.553 12 H 0.104 0.896 13 C -0.123 4.123 14 N -0.520 5.520 15 Si 0.695 3.305 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.184 1.184 19 C -0.012 4.012 20 C -0.156 4.156 21 N -0.053 5.053 22 C -0.121 4.121 23 N -0.190 5.190 24 C -0.096 4.096 25 C -0.401 4.401 26 S 0.429 5.571 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.182 0.818 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.129 0.871 38 H 0.203 0.797 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -11.547 -23.672 6.800 27.202 hybrid contribution 0.205 -0.851 -0.891 1.249 sum -11.343 -24.523 5.908 27.658 Atomic orbital electron populations 1.20288 0.87176 1.02721 1.03171 1.20401 0.93954 0.83787 1.09984 1.22054 0.90134 0.98197 1.04575 1.19748 0.92854 0.90400 1.15835 1.19975 0.87011 0.82980 0.72533 1.90719 1.29035 1.74391 1.48438 1.86750 1.40822 1.16146 1.81723 1.21004 0.80906 0.90573 0.94597 0.93486 1.22238 1.01397 0.99555 0.97879 1.20810 1.02962 1.01583 1.29981 0.89641 1.24908 0.98362 0.94907 0.94075 1.69857 1.33850 1.15342 1.32966 0.86962 0.83166 0.80343 0.80039 1.19582 1.20823 1.18407 1.20756 0.82919 0.94121 1.03426 1.20701 0.94559 0.96471 1.03857 1.40296 1.05719 1.00802 1.58473 1.23322 0.99627 0.91173 0.97947 1.66381 1.15240 1.14578 1.22783 1.21628 1.01592 0.87420 0.98961 1.27229 1.02857 1.05760 1.04286 1.84355 1.37520 1.01063 1.34151 0.90467 0.92243 0.89821 0.81809 0.92617 0.95087 0.91776 0.92051 0.89839 0.91868 0.87071 0.79730 0.79646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.75 36.00 0.35 -0.46 16 2 C 0.02 0.34 6.81 -81.77 -0.56 -0.22 16 3 C -0.13 -2.02 10.87 -37.49 -0.41 -2.42 16 4 C -0.18 -3.29 6.33 -103.00 -0.65 -3.94 16 5 C 0.53 11.62 7.92 34.32 0.27 11.89 16 6 O -0.53 -12.28 14.13 -19.30 -0.27 -12.56 16 7 O -0.34 -8.24 9.76 -40.75 -0.40 -8.64 16 8 C 0.18 4.71 2.25 -27.88 -0.06 4.65 16 9 H 0.05 1.27 4.25 -51.93 -0.22 1.05 16 10 C -0.15 -3.49 9.53 37.16 0.35 -3.14 16 11 C -0.52 -14.96 9.24 -34.44 -0.32 -15.28 16 12 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 13 C 0.08 2.37 5.47 -17.82 -0.10 2.27 16 14 N -0.88 -26.67 13.96 55.43 0.77 -25.89 16 15 Si 0.87 21.83 27.02 -169.99 -4.59 17.24 16 16 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.26 -6.36 6.78 56.52 0.38 -5.97 16 19 C 0.10 1.54 6.88 -81.12 -0.56 0.99 16 20 C -0.10 -1.29 8.80 36.01 0.32 -0.97 16 21 N -0.37 -5.27 2.91 -55.69 -0.16 -5.43 16 22 C 0.24 2.89 6.46 -87.04 -0.56 2.33 16 23 N -0.47 -5.37 10.07 -15.04 -0.15 -5.52 16 24 C 0.06 0.43 11.34 -19.17 -0.22 0.21 16 25 C -0.26 -1.61 11.35 29.09 0.33 -1.28 16 26 S 0.18 1.48 21.79 -107.50 -2.34 -0.86 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.06 0.61 7.61 -51.92 -0.40 0.22 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.16 2.45 8.06 -52.49 -0.42 2.03 16 31 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 1.44 8.14 -51.92 -0.42 1.01 16 34 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.69 7.29 -51.93 -0.38 0.31 16 37 H 0.11 1.67 6.51 -51.93 -0.34 1.33 16 38 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.19 0.52 8.06 -52.49 -0.42 0.10 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -33.99 348.69 -8.41 -42.40 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: -4.71 Total: -0.63 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.81 Total: -5.37 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.46 Total: -36.84 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.67 Total: -21.19 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.59 Total: 17.24 kcal Atomic # 16 Polarization: 1.48 SS G_CDS: -2.34 Total: -0.86 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.99 -8.41 -42.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.456 kcal (2) G-P(sol) polarization free energy of solvation -33.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds