Wall clock time and date at job start Tue Mar 31 2020 13:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34375 * 125.44406 * 2 1 4 4 C 1.46783 * 106.55773 * 179.97438 * 3 2 1 5 5 C 1.47086 * 126.97037 * 179.74046 * 4 3 2 6 6 O 1.21551 * 120.00242 * 180.02562 * 5 4 3 7 7 O 1.34795 * 119.99964 * 0.02943 * 5 4 3 8 8 C 1.45201 * 117.00003 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46929 * 30.00098 * 8 7 5 10 10 C 1.52998 * 109.46884 * 269.99644 * 8 7 5 11 11 C 1.50707 * 109.46909 * 149.99662 * 8 7 5 12 12 H 1.08001 * 120.00021 * 35.29354 * 11 8 7 13 13 C 1.37879 * 119.99952 * 215.28627 * 11 8 7 14 14 N 1.31509 * 120.00040 * 185.82687 * 13 11 8 15 15 Si 1.86801 * 119.99824 * 5.83132 * 13 11 8 16 16 H 1.48502 * 109.46985 * 84.90248 * 15 13 11 17 17 H 1.48503 * 109.47175 * 204.90257 * 15 13 11 18 18 H 1.48498 * 109.47093 * 324.90209 * 15 13 11 19 19 C 1.37840 * 106.06138 * 0.02562 * 4 3 2 20 20 C 1.50701 * 125.95519 * 179.97438 * 19 4 3 21 21 N 1.35496 * 108.09344 * 359.97438 * 19 4 3 22 22 C 1.39363 * 124.90875 * 179.97438 * 21 19 4 23 23 N 1.29571 * 124.93904 * 227.33942 * 22 21 19 24 24 C 1.31880 * 116.96140 * 179.81595 * 23 22 21 25 25 C 1.33544 * 114.55533 * 0.47215 * 24 23 22 26 26 S 1.70965 * 124.94047 * 47.64478 * 22 21 19 27 27 H 1.09000 * 109.47813 * 89.90691 * 1 2 3 28 28 H 1.09007 * 109.47161 * 209.91048 * 1 2 3 29 29 H 1.09003 * 109.46821 * 329.90139 * 1 2 3 30 30 H 1.07995 * 126.72242 * 359.97438 * 3 2 1 31 31 H 1.08995 * 109.47511 * 305.17763 * 10 8 7 32 32 H 1.09001 * 109.46847 * 65.18229 * 10 8 7 33 33 H 1.09010 * 109.46768 * 185.17887 * 10 8 7 34 34 H 0.97000 * 120.00241 * 180.02562 * 14 13 11 35 35 H 1.08992 * 109.47229 * 90.01916 * 20 19 4 36 36 H 1.09003 * 109.47393 * 210.02412 * 20 19 4 37 37 H 1.09005 * 109.46477 * 330.01989 * 20 19 4 38 38 H 1.08001 * 122.72571 * 180.26923 * 24 23 22 39 39 H 1.08002 * 125.98201 * 179.77454 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2862 1.0947 0.0000 4 6 3.6750 0.6196 0.0006 5 6 4.8924 1.4451 -0.0045 6 8 5.9862 0.9151 -0.0037 7 8 4.7950 2.7896 -0.0099 8 6 6.0377 3.5405 -0.0141 9 1 6.8084 2.9646 -0.5263 10 6 6.4755 3.8102 1.4269 11 6 5.8305 4.8505 -0.7298 12 1 4.8869 5.3689 -0.6449 13 6 6.8458 5.3873 -1.4929 14 7 6.7080 6.5827 -2.0234 15 14 8.4169 4.4164 -1.7731 16 1 8.2306 3.4942 -2.9221 17 1 9.5319 5.3526 -2.0655 18 1 8.7371 3.6305 -0.5545 19 6 3.6071 -0.7571 0.0004 20 6 4.7819 -1.7010 0.0003 21 7 2.3000 -1.1139 0.0002 22 6 1.8316 -2.4265 -0.0006 23 7 0.9042 -2.8830 -0.7819 24 6 0.5846 -4.1557 -0.6506 25 6 1.2689 -4.8050 0.2947 26 16 2.3918 -3.6667 1.0343 27 1 -0.3635 0.0017 -1.0276 28 1 -0.3634 -0.8908 0.5125 29 1 -0.3633 0.8891 0.5154 30 1 1.9555 2.1228 -0.0004 31 1 5.6675 4.3053 1.9655 32 1 6.7139 2.8662 1.9169 33 1 7.3571 4.4513 1.4248 34 1 7.4221 6.9601 -2.5606 35 1 5.0649 -1.9290 1.0278 36 1 4.5079 -2.6221 -0.5141 37 1 5.6227 -1.2344 -0.5132 38 1 -0.1715 -4.6333 -1.2561 39 1 1.1542 -5.8459 0.5591 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113692600.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:17:29 Heat of formation + Delta-G solvation = -7.703923 kcal Electronic energy + Delta-G solvation = -24090.348281 eV Core-core repulsion = 20511.443787 eV Total energy + Delta-G solvation = -3578.904495 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.93159 -41.01759 -40.41319 -37.50050 -35.15519 -34.15131 -33.81897 -32.50971 -30.42343 -30.22764 -27.46309 -26.91833 -25.95941 -24.29749 -22.67971 -22.41385 -20.94877 -20.42268 -19.29240 -18.78479 -18.29343 -17.55304 -17.21370 -16.85394 -16.47071 -16.17624 -15.89541 -15.39656 -14.88886 -14.84368 -14.52423 -14.47117 -14.27473 -14.25767 -14.09868 -13.74173 -13.51498 -13.25112 -13.13639 -13.01647 -12.91532 -12.72261 -12.58160 -12.50603 -11.94503 -11.47375 -11.33711 -11.11406 -11.09572 -10.85720 -10.78563 -10.44695 -9.58037 -9.25314 -8.45823 -6.55129 -0.74578 -0.26711 0.31957 0.56983 1.07670 1.26361 1.29734 1.33387 1.41146 1.72193 2.14748 2.21004 2.21719 2.93473 3.18282 3.60224 3.70941 3.87242 4.06870 4.25299 4.27129 4.32423 4.40045 4.44692 4.49541 4.62439 4.65125 4.67931 4.72293 4.82392 4.87707 4.98047 4.99899 5.10288 5.33522 5.41415 5.49259 5.63912 5.72716 5.96666 6.18585 6.49692 6.52956 6.99259 7.14462 8.69781 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.025021 B = 0.003117 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.782376 B = 8980.816804 C = 9479.086703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.033 3.967 3 C -0.151 4.151 4 C -0.227 4.227 5 C 0.526 3.474 6 O -0.550 6.550 7 O -0.355 6.355 8 C 0.183 3.817 9 H 0.038 0.962 10 C -0.146 4.146 11 C -0.531 4.531 12 H 0.046 0.954 13 C 0.035 3.965 14 N -0.924 5.924 15 Si 0.929 3.071 16 H -0.270 1.270 17 H -0.265 1.265 18 H -0.248 1.248 19 C 0.115 3.885 20 C -0.096 4.096 21 N -0.369 5.369 22 C 0.191 3.809 23 N -0.489 5.489 24 C 0.036 3.964 25 C -0.226 4.226 26 S 0.206 5.794 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.161 0.839 31 H 0.060 0.940 32 H 0.047 0.953 33 H 0.067 0.933 34 H 0.276 0.724 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.214 0.786 39 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.875 -27.917 7.299 31.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.074 4.074 3 C -0.174 4.174 4 C -0.235 4.235 5 C 0.374 3.626 6 O -0.445 6.445 7 O -0.271 6.271 8 C 0.130 3.870 9 H 0.056 0.944 10 C -0.204 4.204 11 C -0.568 4.568 12 H 0.065 0.935 13 C -0.166 4.166 14 N -0.562 5.562 15 Si 0.752 3.248 16 H -0.196 1.196 17 H -0.189 1.189 18 H -0.172 1.172 19 C 0.000 4.000 20 C -0.153 4.153 21 N -0.048 5.048 22 C -0.171 4.171 23 N -0.208 5.208 24 C -0.115 4.115 25 C -0.365 4.365 26 S 0.458 5.542 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.118 0.882 30 H 0.179 0.821 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.231 0.769 39 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.108 -27.824 7.609 31.284 hybrid contribution 0.152 0.175 -1.121 1.145 sum -11.956 -27.649 6.488 30.814 Atomic orbital electron populations 1.20357 0.84779 1.03900 1.03705 1.20820 0.95310 0.83385 1.07853 1.22078 0.89724 0.98970 1.06608 1.19601 0.92218 0.91479 1.20246 1.20487 0.88263 0.82031 0.71797 1.90680 1.29942 1.74216 1.49614 1.86701 1.39899 1.17925 1.82566 1.20843 0.81222 0.89105 0.95864 0.94370 1.22136 1.01658 1.00562 0.96040 1.20931 1.01709 1.03154 1.31051 0.93521 1.25670 1.01697 0.95682 0.93579 1.69960 1.35423 1.16851 1.33937 0.86009 0.79405 0.79206 0.80222 1.19572 1.18920 1.17199 1.20996 0.84395 0.93461 1.01103 1.20745 0.92863 0.96604 1.05089 1.40348 1.05050 1.02231 1.57150 1.23421 1.02087 0.90772 1.00809 1.66318 1.14936 1.16517 1.23000 1.22115 1.02848 0.86337 1.00207 1.27797 1.00072 1.06860 1.01804 1.84273 1.37205 0.99824 1.32925 0.90120 0.91460 0.88151 0.82103 0.92058 0.93352 0.91413 0.91437 0.87895 0.89517 0.89143 0.76928 0.75602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.43 9.75 71.24 0.69 -0.73 16 2 C 0.03 0.91 6.81 40.91 0.28 1.19 16 3 C -0.15 -5.02 10.87 23.62 0.26 -4.77 16 4 C -0.23 -8.59 6.33 -18.82 -0.12 -8.71 16 5 C 0.53 23.95 7.92 70.14 0.56 24.51 16 6 O -0.55 -25.90 14.13 19.67 0.28 -25.62 16 7 O -0.35 -18.04 9.76 -57.07 -0.56 -18.59 16 8 C 0.18 9.71 2.25 29.85 0.07 9.78 16 9 H 0.04 2.08 4.25 -2.39 -0.01 2.07 16 10 C -0.15 -6.70 9.53 71.98 0.69 -6.01 16 11 C -0.53 -32.09 9.24 25.60 0.24 -31.85 16 12 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 13 C 0.03 2.05 5.47 84.66 0.46 2.51 16 14 N -0.92 -57.30 13.96 21.45 0.30 -57.00 16 15 Si 0.93 45.37 27.02 68.60 1.85 47.23 16 16 H -0.27 -13.13 7.11 99.48 0.71 -12.43 16 17 H -0.26 -12.07 7.11 99.48 0.71 -11.36 16 18 H -0.25 -11.60 6.78 99.48 0.67 -10.93 16 19 C 0.11 3.56 6.88 41.90 0.29 3.85 16 20 C -0.10 -2.41 8.80 71.24 0.63 -1.78 16 21 N -0.37 -10.14 2.91 -330.10 -0.96 -11.11 16 22 C 0.19 4.12 6.46 179.10 1.16 5.28 16 23 N -0.49 -9.89 10.07 -201.50 -2.03 -11.92 16 24 C 0.04 0.41 11.34 83.62 0.95 1.36 16 25 C -0.23 -1.67 11.35 66.76 0.76 -0.91 16 26 S 0.21 2.75 21.79 -56.49 -1.23 1.52 16 27 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 1.27 7.61 -2.38 -0.02 1.25 16 29 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.16 5.20 8.06 -2.91 -0.02 5.17 16 31 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 3.01 8.14 -2.38 -0.02 2.99 16 34 H 0.28 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.09 1.72 7.29 -2.39 -0.02 1.71 16 37 H 0.09 2.71 6.51 -2.38 -0.02 2.69 16 38 H 0.21 1.06 8.06 -2.91 -0.02 1.03 16 39 H 0.23 -0.22 8.06 -2.91 -0.02 -0.24 16 Total: -1.00 -77.29 348.69 5.60 -71.69 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: 1.05 Total: 10.08 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 6.90 Total: -6.29 kcal Atomic # 7 Polarization: -77.33 SS G_CDS: -2.69 Total: -80.02 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -0.28 Total: -44.21 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.85 Total: 47.23 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.23 Total: 1.52 kcal Total: -77.29 5.60 -71.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113692600.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.983 kcal (2) G-P(sol) polarization free energy of solvation -77.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds