Wall clock time and date at job start Tue Mar 31 2020 12:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47239 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47079 * 119.99671 * 3 2 1 7 7 C 1.37876 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47272 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.42101 * 108.57788 * 65.51092 * 11 10 9 13 13 O 1.42104 * 108.58016 * 294.48685 * 11 10 9 14 14 C 1.81397 * 101.92136 * 180.02562 * 11 10 9 15 15 C 1.50705 * 109.46989 * 179.97438 * 14 11 10 16 16 C 1.39921 * 125.87847 * 270.01191 * 15 14 11 17 17 C 1.35319 * 107.92780 * 179.70378 * 16 15 14 18 18 N 1.35223 * 107.71653 * 0.42922 * 17 16 15 19 19 C 1.40180 * 126.05641 * 179.83906 * 18 17 16 20 20 C 1.38835 * 120.06682 * 179.71082 * 19 18 17 21 21 C 1.38125 * 119.93500 * 180.02562 * 20 19 18 22 22 C 1.38282 * 120.06295 * 359.97438 * 21 20 19 23 23 C 1.38280 * 120.13445 * 0.02562 * 22 21 20 24 24 C 1.38125 * 120.06809 * 359.97438 * 23 22 21 25 25 N 1.30877 * 125.87571 * 89.97965 * 15 14 11 26 26 H 0.97004 * 119.99734 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47611 * 59.99184 * 9 7 2 28 28 H 1.09001 * 109.46471 * 299.99347 * 9 7 2 29 29 H 1.09000 * 109.46651 * 60.00080 * 10 9 7 30 30 H 1.08999 * 109.47151 * 299.99923 * 10 9 7 31 31 H 1.08999 * 109.47171 * 60.00272 * 14 11 10 32 32 H 1.09000 * 109.46955 * 300.00013 * 14 11 10 33 33 H 1.07997 * 126.03451 * 359.97438 * 16 15 14 34 34 H 1.08001 * 126.14253 * 180.26933 * 17 16 15 35 35 H 1.08005 * 120.03715 * 0.04748 * 20 19 18 36 36 H 1.07997 * 119.97122 * 179.72294 * 21 20 19 37 37 H 1.07995 * 119.93553 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.96901 * 180.02562 * 23 22 21 39 39 H 1.07993 * 120.03296 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2331 0.0013 12 8 0.6278 -5.3463 -1.2242 13 8 0.6286 -5.3457 1.2274 14 6 2.6877 -6.4451 0.0020 15 6 2.1121 -7.8379 0.0033 16 6 1.7990 -8.5947 1.1378 17 6 1.3011 -9.7822 0.7218 18 7 1.3083 -9.7805 -0.6304 19 6 0.8760 -10.8253 -1.4590 20 6 0.9335 -10.6875 -2.8393 21 6 0.5063 -11.7185 -3.6533 22 6 0.0222 -12.8871 -3.0946 23 6 -0.0363 -13.0272 -1.7202 24 6 0.3894 -11.9998 -0.9011 25 7 1.8186 -8.5474 -1.0565 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8717 -3.6044 0.8905 30 1 2.8718 -3.6045 -0.8894 31 1 3.3013 -6.3051 0.8919 32 1 3.3014 -6.3059 -0.8880 33 1 1.9275 -8.2840 2.1641 34 1 0.9617 -10.5878 1.3560 35 1 1.3123 -9.7753 -3.2763 36 1 0.5467 -11.6102 -4.7271 37 1 -0.3109 -13.6920 -3.7330 38 1 -0.4145 -13.9412 -1.2867 39 1 0.3439 -12.1099 0.1723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190921903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:24 Heat of formation + Delta-G solvation = 34.441659 kcal Electronic energy + Delta-G solvation = -23179.249891 eV Core-core repulsion = 19602.172966 eV Total energy + Delta-G solvation = -3577.076925 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.83252 -39.30783 -36.43641 -35.48902 -34.42289 -33.85960 -31.62587 -31.23377 -31.09000 -30.07878 -27.94438 -25.58357 -23.58744 -23.02748 -21.60169 -20.98549 -20.02455 -18.63514 -18.35623 -16.99406 -16.55523 -16.01944 -15.77188 -15.58740 -15.26601 -15.22929 -14.91707 -14.50237 -14.23972 -13.86610 -13.71476 -13.51523 -13.29046 -13.07582 -12.58634 -12.46097 -12.02868 -11.73779 -11.56880 -11.51244 -11.45670 -11.25637 -11.04691 -10.93267 -10.88021 -10.39619 -10.33851 -10.12822 -9.66867 -9.42375 -9.36301 -9.12077 -8.47207 -8.29354 -6.09424 -4.15389 0.27154 0.57096 0.93173 1.90276 2.04181 2.49947 3.25065 3.29166 3.33970 3.35630 3.41644 3.85308 4.13189 4.33053 4.37687 4.39972 4.48123 4.56040 4.70700 4.84206 4.95783 5.01639 5.18428 5.25452 5.25849 5.38413 5.44708 5.58292 5.65969 5.69912 5.71002 5.91276 5.95612 6.08835 6.28862 6.38327 6.49532 6.88791 7.33835 7.36602 7.42226 7.82980 8.19584 8.87948 9.48918 11.01438 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.002384 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.511751 B =11741.503513 C =12100.721560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.570 4.570 11 S 2.401 3.599 12 O -0.933 6.933 13 O -0.936 6.936 14 C -0.547 4.547 15 C 0.090 3.910 16 C -0.242 4.242 17 C 0.052 3.948 18 N -0.321 5.321 19 C 0.163 3.837 20 C -0.119 4.119 21 C -0.094 4.094 22 C -0.132 4.132 23 C -0.094 4.094 24 C -0.142 4.142 25 N -0.266 5.266 26 H 0.265 0.735 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.164 0.836 34 H 0.183 0.817 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.369 -26.492 -1.276 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.703 4.703 11 S 2.583 3.417 12 O -0.930 6.930 13 O -0.933 6.933 14 C -0.672 4.672 15 C -0.078 4.078 16 C -0.271 4.271 17 C -0.089 4.089 18 N -0.097 5.097 19 C 0.070 3.930 20 C -0.139 4.139 21 C -0.113 4.113 22 C -0.151 4.151 23 C -0.112 4.112 24 C -0.163 4.163 25 N -0.087 5.087 26 H 0.075 0.925 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.168 0.832 32 H 0.164 0.836 33 H 0.182 0.818 34 H 0.200 0.800 35 H 0.158 0.842 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.150 0.850 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.280 -26.698 -2.558 27.020 hybrid contribution 1.397 1.009 0.960 1.973 sum 4.677 -25.689 -1.598 26.160 Atomic orbital electron populations 1.69955 1.06109 1.27281 1.49393 1.25073 0.94985 0.99518 0.94946 0.86520 0.79472 0.82521 0.78686 1.20079 1.21105 1.20072 1.20980 0.93045 0.89724 1.52374 0.92019 1.18995 0.92719 0.90033 0.99275 1.30236 1.13445 1.16439 1.10211 1.08934 0.78304 0.78743 0.75679 1.93559 1.68317 1.85636 1.45505 1.93542 1.68431 1.85789 1.45539 1.29113 1.20458 1.05010 1.12617 1.21219 0.99735 0.95177 0.91647 1.21613 1.10607 0.94428 1.00414 1.22629 1.01657 1.00424 0.84193 1.45824 1.47942 1.11596 1.04364 1.17617 0.99088 0.86106 0.90159 1.21025 1.01145 1.00752 0.90995 1.21115 0.97283 0.92684 1.00188 1.21248 1.00545 0.98139 0.95149 1.20965 0.98617 0.98177 0.93481 1.20819 1.02494 0.92323 1.00680 1.77484 1.18230 0.91007 1.21946 0.92478 0.94589 0.94552 0.85920 0.85948 0.83154 0.83605 0.81835 0.79983 0.84157 0.84932 0.85401 0.84981 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.70 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.57 -10.55 5.74 37.16 0.21 -10.33 16 11 S 2.40 43.00 4.70 -107.50 -0.51 42.49 16 12 O -0.93 -20.30 18.10 -57.83 -1.05 -21.34 16 13 O -0.94 -19.32 18.10 -57.83 -1.05 -20.36 16 14 C -0.55 -7.02 6.37 36.01 0.23 -6.79 16 15 C 0.09 1.34 6.48 -82.37 -0.53 0.81 16 16 C -0.24 -3.08 10.74 -39.99 -0.43 -3.51 16 17 C 0.05 0.59 10.80 -17.10 -0.18 0.41 16 18 N -0.32 -4.37 3.80 -10.70 -0.04 -4.41 16 19 C 0.16 1.89 6.69 -83.60 -0.56 1.33 16 20 C -0.12 -1.33 9.66 -39.40 -0.38 -1.71 16 21 C -0.09 -0.78 10.04 -39.61 -0.40 -1.18 16 22 C -0.13 -0.92 10.04 -39.55 -0.40 -1.31 16 23 C -0.09 -0.64 10.04 -39.61 -0.40 -1.04 16 24 C -0.14 -1.21 9.46 -39.40 -0.37 -1.58 16 25 N -0.27 -4.27 11.87 33.69 0.40 -3.87 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 30 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 31 H 0.15 1.35 8.14 -51.92 -0.42 0.93 16 32 H 0.15 1.55 8.14 -51.92 -0.42 1.13 16 33 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 34 H 0.18 1.21 7.04 -52.49 -0.37 0.84 16 35 H 0.14 1.69 7.70 -52.48 -0.40 1.29 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 39 H 0.13 0.80 6.74 -52.49 -0.35 0.45 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -38.65 354.92 -9.83 -48.48 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.90 Total: 0.89 kcal Atomic # 6 Polarization: -33.74 SS G_CDS: -3.76 Total: -37.50 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 1.10 Total: -34.19 kcal Atomic # 8 Polarization: -39.61 SS G_CDS: -2.09 Total: -41.71 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 43.00 SS G_CDS: -0.51 Total: 42.49 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -38.65 -9.83 -48.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190921903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.923 kcal (2) G-P(sol) polarization free energy of solvation -38.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds