Wall clock time and date at job start Tue Mar 31 2020 12:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00275 * 2 1 4 4 H 1.48498 * 109.47239 * 239.99905 * 3 2 1 5 5 H 1.48501 * 109.47104 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47079 * 119.99671 * 3 2 1 7 7 C 1.37876 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47272 * 179.97438 * 9 7 2 11 11 S 1.81397 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.42101 * 108.57788 * 65.51092 * 11 10 9 13 13 O 1.42104 * 108.58016 * 294.48685 * 11 10 9 14 14 C 1.81397 * 101.92136 * 180.02562 * 11 10 9 15 15 C 1.50705 * 109.46989 * 179.97438 * 14 11 10 16 16 C 1.39921 * 125.87847 * 270.01191 * 15 14 11 17 17 C 1.35319 * 107.92780 * 179.70378 * 16 15 14 18 18 N 1.35223 * 107.71653 * 0.42922 * 17 16 15 19 19 C 1.40180 * 126.05641 * 179.83906 * 18 17 16 20 20 C 1.38835 * 120.06682 * 179.71082 * 19 18 17 21 21 C 1.38125 * 119.93500 * 180.02562 * 20 19 18 22 22 C 1.38282 * 120.06295 * 359.97438 * 21 20 19 23 23 C 1.38280 * 120.13445 * 0.02562 * 22 21 20 24 24 C 1.38125 * 120.06809 * 359.97438 * 23 22 21 25 25 N 1.30877 * 125.87571 * 89.97965 * 15 14 11 26 26 H 0.97004 * 119.99734 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.47611 * 59.99184 * 9 7 2 28 28 H 1.09001 * 109.46471 * 299.99347 * 9 7 2 29 29 H 1.09000 * 109.46651 * 60.00080 * 10 9 7 30 30 H 1.08999 * 109.47151 * 299.99923 * 10 9 7 31 31 H 1.08999 * 109.47171 * 60.00272 * 14 11 10 32 32 H 1.09000 * 109.46955 * 300.00013 * 14 11 10 33 33 H 1.07997 * 126.03451 * 359.97438 * 16 15 14 34 34 H 1.08001 * 126.14253 * 180.26933 * 17 16 15 35 35 H 1.08005 * 120.03715 * 0.04748 * 20 19 18 36 36 H 1.07997 * 119.97122 * 179.72294 * 21 20 19 37 37 H 1.07995 * 119.93553 * 180.02562 * 22 21 20 38 38 H 1.07997 * 119.96901 * 180.02562 * 23 22 21 39 39 H 1.07993 * 120.03296 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2331 0.0013 12 8 0.6278 -5.3463 -1.2242 13 8 0.6286 -5.3457 1.2274 14 6 2.6877 -6.4451 0.0020 15 6 2.1121 -7.8379 0.0033 16 6 1.7990 -8.5947 1.1378 17 6 1.3011 -9.7822 0.7218 18 7 1.3083 -9.7805 -0.6304 19 6 0.8760 -10.8253 -1.4590 20 6 0.9335 -10.6875 -2.8393 21 6 0.5063 -11.7185 -3.6533 22 6 0.0222 -12.8871 -3.0946 23 6 -0.0363 -13.0272 -1.7202 24 6 0.3894 -11.9998 -0.9011 25 7 1.8186 -8.5474 -1.0565 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8717 -3.6044 0.8905 30 1 2.8718 -3.6045 -0.8894 31 1 3.3013 -6.3051 0.8919 32 1 3.3014 -6.3059 -0.8880 33 1 1.9275 -8.2840 2.1641 34 1 0.9617 -10.5878 1.3560 35 1 1.3123 -9.7753 -3.2763 36 1 0.5467 -11.6102 -4.7271 37 1 -0.3109 -13.6920 -3.7330 38 1 -0.4145 -13.9412 -1.2867 39 1 0.3439 -12.1099 0.1723 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190921903.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:23 Heat of formation + Delta-G solvation = 6.810452 kcal Electronic energy + Delta-G solvation = -23180.448070 eV Core-core repulsion = 19602.172966 eV Total energy + Delta-G solvation = -3578.275104 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.74055 -39.97786 -37.98782 -37.03321 -35.86197 -35.29112 -33.11884 -32.33428 -31.97261 -30.99304 -28.86635 -27.52902 -24.33284 -23.95004 -23.29760 -21.79205 -21.05811 -19.84311 -19.37380 -18.84545 -17.54254 -17.22131 -17.12889 -16.92459 -16.48711 -16.33394 -15.95619 -15.83491 -15.21714 -15.00407 -14.62297 -14.46154 -14.43156 -14.26055 -13.84645 -13.71436 -13.47691 -13.10499 -13.03804 -12.87000 -12.75277 -12.62335 -12.43365 -12.21668 -12.17845 -12.09940 -11.79876 -11.70599 -11.24585 -10.84071 -10.62101 -10.27415 -10.05302 -9.11825 -8.23803 -6.38466 -1.09845 -0.21390 0.30159 1.07300 1.19610 1.42098 1.46334 1.53618 1.54262 1.90119 2.39515 2.67623 2.76196 3.04153 3.09501 3.18094 3.50093 3.77333 3.85719 3.95436 4.07225 4.11690 4.20225 4.23265 4.37354 4.40924 4.48873 4.59235 4.68675 4.80920 4.83064 4.99130 5.19268 5.31684 5.32011 5.33327 5.41660 5.49656 5.70721 5.75380 6.07200 6.12018 6.37898 6.76304 7.31665 8.88492 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.032645 B = 0.002384 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.511751 B =11741.503513 C =12100.721560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.009 4.009 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.260 1.260 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.019 3.981 10 C -0.569 4.569 11 S 2.403 3.597 12 O -0.987 6.987 13 O -0.974 6.974 14 C -0.512 4.512 15 C 0.059 3.941 16 C -0.261 4.261 17 C 0.058 3.942 18 N -0.325 5.325 19 C 0.123 3.877 20 C -0.147 4.147 21 C -0.101 4.101 22 C -0.125 4.125 23 C -0.090 4.090 24 C -0.140 4.140 25 N -0.311 5.311 26 H 0.266 0.734 27 H 0.000 1.000 28 H 0.005 0.995 29 H 0.158 0.842 30 H 0.150 0.850 31 H 0.199 0.801 32 H 0.172 0.828 33 H 0.186 0.814 34 H 0.228 0.772 35 H 0.115 0.885 36 H 0.149 0.851 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.394 -29.063 -0.434 29.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.801 3.199 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.100 0.900 9 C -0.019 4.019 10 C -0.701 4.701 11 S 2.591 3.409 12 O -0.984 6.984 13 O -0.971 6.971 14 C -0.642 4.642 15 C -0.107 4.107 16 C -0.290 4.290 17 C -0.083 4.083 18 N -0.101 5.101 19 C 0.032 3.968 20 C -0.167 4.167 21 C -0.119 4.119 22 C -0.143 4.143 23 C -0.108 4.108 24 C -0.160 4.160 25 N -0.134 5.134 26 H 0.075 0.925 27 H 0.018 0.982 28 H 0.024 0.976 29 H 0.176 0.824 30 H 0.168 0.832 31 H 0.216 0.784 32 H 0.190 0.810 33 H 0.203 0.797 34 H 0.245 0.755 35 H 0.133 0.867 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.186 0.814 39 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 5.277 -29.222 -1.727 29.745 hybrid contribution 0.731 1.528 0.639 1.811 sum 6.008 -27.694 -1.088 28.359 Atomic orbital electron populations 1.70128 1.08251 1.28330 1.50976 1.26198 0.95874 1.04137 0.94461 0.85316 0.78047 0.77011 0.79575 1.18718 1.21230 1.18437 1.21551 0.94220 0.90589 1.51394 0.89983 1.18830 0.93761 0.93153 0.96188 1.30089 1.12305 1.14344 1.13354 1.08427 0.79324 0.79284 0.73907 1.93491 1.71169 1.86527 1.47231 1.93484 1.70791 1.86471 1.46354 1.28763 1.17405 1.01589 1.16469 1.21590 1.00776 0.95908 0.92437 1.22027 1.11166 0.94819 1.00960 1.23408 1.00010 1.01211 0.83682 1.46061 1.47378 1.11204 1.05496 1.18072 1.01349 0.87022 0.90330 1.21059 1.02913 1.00994 0.91769 1.21370 0.97016 0.92628 1.00887 1.21685 0.98738 0.97977 0.95929 1.21455 0.97172 0.98787 0.93370 1.21197 1.01268 0.91230 1.02315 1.77391 1.19784 0.92685 1.23496 0.92490 0.98176 0.97624 0.82387 0.83205 0.78357 0.80995 0.79651 0.75530 0.86712 0.83373 0.82279 0.81428 0.82639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.45 13.29 21.45 0.28 -58.16 16 2 C -0.01 -0.50 5.46 84.65 0.46 -0.04 16 3 Si 0.98 43.63 29.54 68.60 2.03 45.66 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 7 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 8 H 0.08 4.11 7.74 -2.91 -0.02 4.09 16 9 C 0.02 1.02 4.98 29.85 0.15 1.17 16 10 C -0.57 -20.90 5.74 71.98 0.41 -20.48 16 11 S 2.40 87.93 4.70 -56.49 -0.27 87.67 16 12 O -0.99 -45.64 18.10 -127.37 -2.31 -47.95 16 13 O -0.97 -41.58 18.10 -127.37 -2.30 -43.88 16 14 C -0.51 -12.20 6.37 71.24 0.45 -11.74 16 15 C 0.06 1.73 6.48 43.11 0.28 2.01 16 16 C -0.26 -6.24 10.74 22.00 0.24 -6.00 16 17 C 0.06 1.22 10.80 83.50 0.90 2.12 16 18 N -0.33 -8.76 3.80 -187.77 -0.71 -9.47 16 19 C 0.12 2.83 6.69 38.09 0.25 3.08 16 20 C -0.15 -3.42 9.66 22.39 0.22 -3.20 16 21 C -0.10 -1.60 10.04 22.25 0.22 -1.37 16 22 C -0.13 -1.37 10.04 22.29 0.22 -1.15 16 23 C -0.09 -0.91 10.04 22.25 0.22 -0.69 16 24 C -0.14 -2.03 9.46 22.39 0.21 -1.82 16 25 N -0.31 -10.21 11.87 -47.33 -0.56 -10.77 16 26 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 27 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.16 4.60 8.14 -2.39 -0.02 4.58 16 30 H 0.15 4.61 8.14 -2.39 -0.02 4.59 16 31 H 0.20 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.17 3.24 8.14 -2.39 -0.02 3.22 16 33 H 0.19 3.35 8.06 -2.91 -0.02 3.33 16 34 H 0.23 2.21 7.04 -2.91 -0.02 2.19 16 35 H 0.11 3.12 7.70 -2.91 -0.02 3.10 16 36 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 37 H 0.16 0.74 8.06 -2.91 -0.02 0.72 16 38 H 0.17 0.52 8.06 -2.91 -0.02 0.50 16 39 H 0.16 1.33 6.74 -2.91 -0.02 1.31 16 Total: -1.00 -91.98 354.92 1.70 -90.28 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.05 Total: 14.54 kcal Atomic # 6 Polarization: -72.40 SS G_CDS: 4.48 Total: -67.92 kcal Atomic # 7 Polarization: -77.41 SS G_CDS: -0.99 Total: -78.40 kcal Atomic # 8 Polarization: -87.22 SS G_CDS: -4.61 Total: -91.83 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 87.93 SS G_CDS: -0.27 Total: 87.67 kcal Total: -91.98 1.70 -90.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190921903.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.093 kcal (2) G-P(sol) polarization free energy of solvation -91.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds