Wall clock time and date at job start Tue Mar 31 2020 13:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 O 1.34906 * 126.33308 * 2 1
4 4 C 1.34545 * 107.67927 * 179.97438 * 3 2 1
5 5 C 1.47018 * 125.75713 * 179.97438 * 4 3 2
6 6 C 1.36174 * 125.33646 * 0.02562 * 5 4 3
7 7 C 1.37727 * 114.44465 * 179.97438 * 6 5 4
8 8 C 1.33719 * 115.19223 * 0.02562 * 7 6 5
9 9 S 1.75825 * 109.95835 * 359.75577 * 8 7 6
10 10 N 1.31522 * 108.47938 * 359.97438 * 4 3 2
11 11 C 1.34214 * 108.61424 * 359.97438 * 10 4 3
12 12 C 1.50698 * 126.05278 * 179.97438 * 11 10 4
13 13 C 1.50698 * 109.47302 * 89.97900 * 12 11 10
14 14 O 1.21287 * 119.99853 * 359.97438 * 13 12 11
15 15 N 1.34773 * 120.00539 * 180.02562 * 13 12 11
16 16 C 1.46499 * 120.00219 * 179.97438 * 15 13 12
17 17 H 1.08997 * 109.47515 * 324.99805 * 16 15 13
18 18 C 1.53008 * 109.47165 * 85.00137 * 16 15 13
19 19 C 1.50701 * 109.47022 * 204.99506 * 16 15 13
20 20 H 1.07996 * 120.00052 * 0.02562 * 19 16 15
21 21 C 1.37880 * 119.99825 * 179.97438 * 19 16 15
22 22 N 1.31511 * 119.99933 * 0.02562 * 21 19 16
23 23 Si 1.86797 * 119.99826 * 180.02562 * 21 19 16
24 24 H 1.48503 * 109.46950 * 90.00493 * 23 21 19
25 25 H 1.48503 * 109.47240 * 210.00073 * 23 21 19
26 26 H 1.48505 * 109.47437 * 330.00401 * 23 21 19
27 27 H 1.08994 * 109.47588 * 0.03122 * 1 2 3
28 28 H 1.09002 * 109.46849 * 120.02783 * 1 2 3
29 29 H 1.08997 * 109.47383 * 240.02308 * 1 2 3
30 30 H 1.08005 * 122.77972 * 0.02562 * 6 5 4
31 31 H 1.08001 * 122.40389 * 180.02562 * 7 6 5
32 32 H 1.07998 * 125.02129 * 179.97438 * 8 7 6
33 33 H 1.09003 * 109.47237 * 209.97721 * 12 11 10
34 34 H 1.09000 * 109.47383 * 329.97457 * 12 11 10
35 35 H 0.96997 * 119.99560 * 359.97438 * 15 13 12
36 36 H 1.08997 * 109.47176 * 59.99460 * 18 16 15
37 37 H 1.08992 * 109.47033 * 179.97438 * 18 16 15
38 38 H 1.09000 * 109.46561 * 299.99823 * 18 16 15
39 39 H 0.97001 * 119.99992 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 8 2.3062 1.0868 0.0000
4 6 3.5810 0.6564 0.0006
5 6 4.7766 1.5120 0.0002
6 6 4.7706 2.8738 -0.0002
7 6 6.0218 3.4492 0.0001
8 6 7.0445 2.5877 0.0003
9 16 6.4388 0.9371 0.0070
10 7 3.5770 -0.6588 0.0015
11 6 2.3038 -1.0833 0.0021
12 6 1.8478 -2.5196 0.0026
13 6 1.6968 -2.9982 1.4236
14 8 1.9364 -2.2470 2.3452
15 7 1.2965 -4.2613 1.6704
16 6 1.1503 -4.7266 3.0518
17 1 1.9161 -4.2637 3.6742
18 6 -0.2346 -4.3413 3.5759
19 6 1.3050 -6.2250 3.0961
20 1 1.4938 -6.7755 2.1864
21 6 1.2066 -6.8930 4.2983
22 7 0.9772 -6.2225 5.4062
23 14 1.3991 -8.7502 4.3533
24 1 2.8285 -9.0936 4.5635
25 1 0.5888 -9.2990 5.4702
26 1 0.9331 -9.3345 3.0700
27 1 -0.3634 1.0276 -0.0006
28 1 -0.3633 -0.5143 -0.8898
29 1 -0.3634 -0.5134 0.8901
30 1 3.8599 3.4545 0.0001
31 1 6.1667 4.5195 0.0002
32 1 8.0884 2.8649 0.0001
33 1 0.8891 -2.5967 -0.5105
34 1 2.5856 -3.1353 -0.5117
35 1 1.1053 -4.8621 0.9334
36 1 -1.0004 -4.8042 2.9535
37 1 -0.3435 -4.6879 4.6035
38 1 -0.3465 -3.2575 3.5438
39 1 0.9075 -6.6925 6.2519
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000194648663.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:26:27
Heat of formation + Delta-G solvation = 12.714609 kcal
Electronic energy + Delta-G solvation = -23503.837799 eV
Core-core repulsion = 19925.818718 eV
Total energy + Delta-G solvation = -3578.019081 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.58 seconds
Orbital eigenvalues (eV)
-43.22730 -38.83569 -37.90096 -35.21392 -34.58111 -33.24327 -32.36496 -30.24415
-30.09226 -28.27779 -26.08627 -25.24046 -24.13582 -22.25618 -21.66683 -20.79731
-19.48793 -19.02624 -18.14972 -17.27336 -16.62502 -16.29115 -15.63003 -15.55795
-15.16655 -14.72554 -14.28737 -13.89662 -13.79237 -13.50852 -13.08960 -13.00197
-12.93770 -12.87015 -12.52343 -12.36908 -12.32788 -11.94204 -11.53763 -11.17590
-11.04978 -11.02892 -10.95290 -10.71949 -10.45733 -10.29643 -10.22730 -9.66901
-9.05073 -8.99125 -8.75107 -8.53650 -8.04722 -7.89326 -6.11167 -4.20389
0.23376 1.11485 1.62832 1.72591 2.33810 2.73218 2.92894 3.25543
3.32019 3.33653 3.41136 3.77133 4.19847 4.42521 4.70285 4.76682
4.79167 5.03476 5.08734 5.21172 5.24545 5.35628 5.42395 5.51311
5.61254 5.62923 5.76996 5.85933 6.03980 6.05935 6.08945 6.29447
6.82942 6.96003 7.15869 7.47645 7.57625 7.70580 7.70884 7.93074
8.16168 8.68074 8.79793 9.15214 9.47264 10.94882
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.019173 B = 0.002708 C = 0.002499
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1460.004278 B =10336.029977 C =11200.802521
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 C -0.028 4.028
3 O -0.191 6.191
4 C 0.245 3.755
5 C -0.124 4.124
6 C -0.106 4.106
7 C -0.137 4.137
8 C -0.222 4.222
9 S 0.213 5.787
10 N -0.450 5.450
11 C 0.025 3.975
12 C -0.065 4.065
13 C 0.505 3.495
14 O -0.547 6.547
15 N -0.709 5.709
16 C 0.265 3.735
17 H 0.047 0.953
18 C -0.146 4.146
19 C -0.533 4.533
20 H 0.061 0.939
21 C 0.065 3.935
22 N -0.884 5.884
23 Si 0.902 3.098
24 H -0.280 1.280
25 H -0.285 1.285
26 H -0.273 1.273
27 H 0.078 0.922
28 H 0.090 0.910
29 H 0.094 0.906
30 H 0.147 0.853
31 H 0.146 0.854
32 H 0.171 0.829
33 H 0.105 0.895
34 H 0.107 0.893
35 H 0.389 0.611
36 H 0.026 0.974
37 H 0.090 0.910
38 H 0.013 0.987
39 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.873 16.759 -14.894 22.945
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.125 4.125
2 C -0.081 4.081
3 O -0.079 6.079
4 C 0.041 3.959
5 C -0.243 4.243
6 C -0.140 4.140
7 C -0.167 4.167
8 C -0.360 4.360
9 S 0.479 5.521
10 N -0.179 5.179
11 C -0.098 4.098
12 C -0.105 4.105
13 C 0.288 3.712
14 O -0.425 6.425
15 N -0.357 5.357
16 C 0.163 3.837
17 H 0.065 0.935
18 C -0.205 4.205
19 C -0.572 4.572
20 H 0.080 0.920
21 C -0.138 4.138
22 N -0.521 5.521
23 Si 0.729 3.271
24 H -0.206 1.206
25 H -0.211 1.211
26 H -0.198 1.198
27 H 0.097 0.903
28 H 0.108 0.892
29 H 0.113 0.887
30 H 0.164 0.836
31 H 0.163 0.837
32 H 0.188 0.812
33 H 0.123 0.877
34 H 0.125 0.875
35 H 0.221 0.779
36 H 0.046 0.954
37 H 0.108 0.892
38 H 0.033 0.967
39 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 6.251 15.468 -13.982 21.768
hybrid contribution -1.243 0.524 -0.156 1.358
sum 5.008 15.992 -14.138 21.925
Atomic orbital electron populations
1.20330 0.83642 1.04254 1.04274 1.23233 0.94746 0.83652 1.06509
1.84450 1.16877 1.36062 1.70487 1.22045 0.81978 0.88089 1.03768
1.21449 0.93437 0.94687 1.14682 1.20633 0.99602 0.91951 1.01822
1.19945 0.91017 1.01305 1.04392 1.26081 1.03748 0.96664 1.09470
1.84586 0.93630 1.05023 1.68873 1.70624 1.22799 1.07731 1.16752
1.20673 0.87793 0.96037 1.05249 1.20044 1.03156 0.89947 0.97398
1.20154 0.78051 0.83104 0.89851 1.90681 1.50745 1.55032 1.46049
1.46487 1.66477 1.11259 1.11526 1.18728 0.94473 0.93870 0.76605
0.93476 1.22071 0.97957 0.96496 1.03948 1.21225 1.50625 0.91156
0.94146 0.92038 1.24896 0.94691 0.98800 0.95380 1.69905 1.48098
1.35633 0.98504 0.86445 0.78171 0.84715 0.77740 1.20558 1.21087
1.19833 0.90346 0.89194 0.88738 0.83569 0.83679 0.81197 0.87687
0.87458 0.77876 0.95448 0.89188 0.96748 0.92591
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.73 9.94 36.00 0.36 -0.37 16
2 C -0.03 -0.42 7.38 -35.64 -0.26 -0.68 16
3 O -0.19 -3.00 10.79 3.37 0.04 -2.96 16
4 C 0.25 3.99 8.09 -14.13 -0.11 3.88 16
5 C -0.12 -1.66 6.46 -36.77 -0.24 -1.90 16
6 C -0.11 -1.13 10.15 -40.51 -0.41 -1.54 16
7 C -0.14 -1.15 10.15 -41.35 -0.42 -1.57 16
8 C -0.22 -1.85 11.21 29.15 0.33 -1.52 16
9 S 0.21 2.41 23.30 -107.50 -2.50 -0.09 16
10 N -0.45 -8.11 11.33 -8.12 -0.09 -8.20 16
11 C 0.02 0.42 5.59 -82.88 -0.46 -0.05 16
12 C -0.06 -0.97 6.03 -29.04 -0.18 -1.15 16
13 C 0.50 10.24 7.79 -10.99 -0.09 10.15 16
14 O -0.55 -13.66 15.70 5.55 0.09 -13.57 16
15 N -0.71 -14.73 5.07 -54.93 -0.28 -15.01 16
16 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16
17 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16
18 C -0.15 -3.63 9.26 37.16 0.34 -3.29 16
19 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 16
20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16
21 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16
22 N -0.88 -25.15 11.32 55.43 0.63 -24.53 16
23 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16
24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
25 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16
26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16
27 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16
28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16
30 H 0.15 1.36 8.06 -52.48 -0.42 0.93 16
31 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16
32 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16
33 H 0.10 1.17 7.88 -51.93 -0.41 0.76 16
34 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16
35 H 0.39 6.80 8.54 -40.82 -0.35 6.45 16
36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16
37 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16
38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16
39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16
LS Contribution 356.13 15.07 5.37 5.37
Total: -1.00 -34.57 356.13 -8.30 -42.87
By element:
Atomic # 1 Polarization: 9.44 SS G_CDS: -4.81 Total: 4.62 kcal
Atomic # 6 Polarization: -2.52 SS G_CDS: -1.71 Total: -4.23 kcal
Atomic # 7 Polarization: -48.00 SS G_CDS: 0.26 Total: -47.74 kcal
Atomic # 8 Polarization: -16.66 SS G_CDS: 0.12 Total: -16.53 kcal
Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal
Atomic # 16 Polarization: 2.41 SS G_CDS: -2.50 Total: -0.09 kcal
Total LS contribution 5.37 Total: 5.37 kcal
Total: -34.57 -8.30 -42.87 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194648663.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 55.585 kcal
(2) G-P(sol) polarization free energy of solvation -34.567 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.018 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.870 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.715 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds