Wall clock time and date at job start Tue Mar 31 2020 13:26:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50693 * 1
3 3 O 1.34906 * 126.33308 * 2 1
4 4 C 1.34545 * 107.67927 * 179.97438 * 3 2 1
5 5 C 1.47018 * 125.75713 * 179.97438 * 4 3 2
6 6 C 1.36174 * 125.33646 * 0.02562 * 5 4 3
7 7 C 1.37727 * 114.44465 * 179.97438 * 6 5 4
8 8 C 1.33719 * 115.19223 * 0.02562 * 7 6 5
9 9 S 1.75825 * 109.95835 * 359.75577 * 8 7 6
10 10 N 1.31522 * 108.47938 * 359.97438 * 4 3 2
11 11 C 1.34214 * 108.61424 * 359.97438 * 10 4 3
12 12 C 1.50698 * 126.05278 * 179.97438 * 11 10 4
13 13 C 1.50698 * 109.47302 * 89.97900 * 12 11 10
14 14 O 1.21287 * 119.99853 * 359.97438 * 13 12 11
15 15 N 1.34773 * 120.00539 * 180.02562 * 13 12 11
16 16 C 1.46499 * 120.00219 * 179.97438 * 15 13 12
17 17 H 1.08997 * 109.47515 * 324.99805 * 16 15 13
18 18 C 1.53008 * 109.47165 * 85.00137 * 16 15 13
19 19 C 1.50701 * 109.47022 * 204.99506 * 16 15 13
20 20 H 1.07996 * 120.00052 * 0.02562 * 19 16 15
21 21 C 1.37880 * 119.99825 * 179.97438 * 19 16 15
22 22 N 1.31511 * 119.99933 * 0.02562 * 21 19 16
23 23 Si 1.86797 * 119.99826 * 180.02562 * 21 19 16
24 24 H 1.48503 * 109.46950 * 90.00493 * 23 21 19
25 25 H 1.48503 * 109.47240 * 210.00073 * 23 21 19
26 26 H 1.48505 * 109.47437 * 330.00401 * 23 21 19
27 27 H 1.08994 * 109.47588 * 0.03122 * 1 2 3
28 28 H 1.09002 * 109.46849 * 120.02783 * 1 2 3
29 29 H 1.08997 * 109.47383 * 240.02308 * 1 2 3
30 30 H 1.08005 * 122.77972 * 0.02562 * 6 5 4
31 31 H 1.08001 * 122.40389 * 180.02562 * 7 6 5
32 32 H 1.07998 * 125.02129 * 179.97438 * 8 7 6
33 33 H 1.09003 * 109.47237 * 209.97721 * 12 11 10
34 34 H 1.09000 * 109.47383 * 329.97457 * 12 11 10
35 35 H 0.96997 * 119.99560 * 359.97438 * 15 13 12
36 36 H 1.08997 * 109.47176 * 59.99460 * 18 16 15
37 37 H 1.08992 * 109.47033 * 179.97438 * 18 16 15
38 38 H 1.09000 * 109.46561 * 299.99823 * 18 16 15
39 39 H 0.97001 * 119.99992 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 8 2.3062 1.0868 0.0000
4 6 3.5810 0.6564 0.0006
5 6 4.7766 1.5120 0.0002
6 6 4.7706 2.8738 -0.0002
7 6 6.0218 3.4492 0.0001
8 6 7.0445 2.5877 0.0003
9 16 6.4388 0.9371 0.0070
10 7 3.5770 -0.6588 0.0015
11 6 2.3038 -1.0833 0.0021
12 6 1.8478 -2.5196 0.0026
13 6 1.6968 -2.9982 1.4236
14 8 1.9364 -2.2470 2.3452
15 7 1.2965 -4.2613 1.6704
16 6 1.1503 -4.7266 3.0518
17 1 1.9161 -4.2637 3.6742
18 6 -0.2346 -4.3413 3.5759
19 6 1.3050 -6.2250 3.0961
20 1 1.4938 -6.7755 2.1864
21 6 1.2066 -6.8930 4.2983
22 7 0.9772 -6.2225 5.4062
23 14 1.3991 -8.7502 4.3533
24 1 2.8285 -9.0936 4.5635
25 1 0.5888 -9.2990 5.4702
26 1 0.9331 -9.3345 3.0700
27 1 -0.3634 1.0276 -0.0006
28 1 -0.3633 -0.5143 -0.8898
29 1 -0.3634 -0.5134 0.8901
30 1 3.8599 3.4545 0.0001
31 1 6.1667 4.5195 0.0002
32 1 8.0884 2.8649 0.0001
33 1 0.8891 -2.5967 -0.5105
34 1 2.5856 -3.1353 -0.5117
35 1 1.1053 -4.8621 0.9334
36 1 -1.0004 -4.8042 2.9535
37 1 -0.3435 -4.6879 4.6035
38 1 -0.3465 -3.2575 3.5438
39 1 0.9075 -6.6925 6.2519
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000194648663.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:26:27
Heat of formation + Delta-G solvation = -12.680499 kcal
Electronic energy + Delta-G solvation = -23504.939013 eV
Core-core repulsion = 19925.818718 eV
Total energy + Delta-G solvation = -3579.120295 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-44.36968 -40.53343 -38.68266 -36.85525 -36.09152 -34.40490 -34.23089 -31.66379
-31.07141 -29.86209 -27.35212 -27.04955 -25.05128 -23.65916 -22.97976 -22.14427
-21.18363 -20.03508 -19.09637 -18.87748 -18.00197 -17.46810 -17.26703 -17.02888
-16.51127 -16.05265 -15.95424 -15.06739 -14.90894 -14.74360 -14.36502 -14.31142
-14.05004 -13.79565 -13.76448 -13.65896 -13.31818 -13.28569 -13.05322 -12.94357
-12.81699 -12.66740 -12.38877 -12.25794 -12.12373 -11.82404 -11.61886 -11.11316
-10.86590 -10.60861 -10.45502 -9.75376 -9.59003 -9.06473 -8.17856 -6.35548
-0.65380 0.25444 0.58646 0.96869 1.39295 1.44763 1.45627 1.56260
1.69409 1.81102 1.89770 2.37022 2.65440 2.85426 3.12716 3.57917
3.70880 4.11196 4.11585 4.17612 4.24088 4.40504 4.51082 4.54828
4.62958 4.68503 4.76482 4.89423 4.93455 4.99344 5.04475 5.09948
5.16489 5.25434 5.38471 5.44486 5.61195 5.69804 5.91775 6.10288
6.55265 6.72835 6.96852 7.32358 7.57266 8.88547
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.019173 B = 0.002708 C = 0.002499
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1460.004278 B =10336.029977 C =11200.802521
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 C -0.029 4.029
3 O -0.198 6.198
4 C 0.240 3.760
5 C -0.172 4.172
6 C -0.087 4.087
7 C -0.142 4.142
8 C -0.191 4.191
9 S 0.169 5.831
10 N -0.489 5.489
11 C -0.010 4.010
12 C -0.049 4.049
13 C 0.503 3.497
14 O -0.600 6.600
15 N -0.702 5.702
16 C 0.271 3.729
17 H -0.010 1.010
18 C -0.132 4.132
19 C -0.546 4.546
20 H 0.075 0.925
21 C 0.012 3.988
22 N -0.919 5.919
23 Si 0.973 3.027
24 H -0.280 1.280
25 H -0.283 1.283
26 H -0.257 1.257
27 H 0.096 0.904
28 H 0.124 0.876
29 H 0.083 0.917
30 H 0.158 0.842
31 H 0.183 0.817
32 H 0.207 0.793
33 H 0.152 0.848
34 H 0.123 0.877
35 H 0.408 0.592
36 H 0.045 0.955
37 H 0.064 0.936
38 H 0.012 0.988
39 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.867 17.361 -16.978 24.766
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.123 4.123
2 C -0.083 4.083
3 O -0.086 6.086
4 C 0.036 3.964
5 C -0.290 4.290
6 C -0.122 4.122
7 C -0.171 4.171
8 C -0.328 4.328
9 S 0.435 5.565
10 N -0.219 5.219
11 C -0.131 4.131
12 C -0.089 4.089
13 C 0.290 3.710
14 O -0.481 6.481
15 N -0.352 5.352
16 C 0.168 3.832
17 H 0.008 0.992
18 C -0.190 4.190
19 C -0.584 4.584
20 H 0.094 0.906
21 C -0.188 4.188
22 N -0.558 5.558
23 Si 0.798 3.202
24 H -0.206 1.206
25 H -0.209 1.209
26 H -0.181 1.181
27 H 0.114 0.886
28 H 0.142 0.858
29 H 0.101 0.899
30 H 0.175 0.825
31 H 0.200 0.800
32 H 0.224 0.776
33 H 0.170 0.830
34 H 0.141 0.859
35 H 0.244 0.756
36 H 0.065 0.935
37 H 0.083 0.917
38 H 0.031 0.969
39 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 6.228 16.049 -16.122 23.586
hybrid contribution -1.140 0.517 0.508 1.351
sum 5.088 16.566 -15.614 23.326
Atomic orbital electron populations
1.20543 0.80670 1.05859 1.05232 1.23991 0.96324 0.83066 1.04923
1.84450 1.16963 1.36466 1.70672 1.22613 0.82822 0.88199 1.02782
1.21629 0.93060 0.95610 1.18724 1.21017 1.01258 0.91009 0.98956
1.20308 0.89765 1.03090 1.03900 1.26524 1.05451 0.94208 1.06598
1.84678 0.93638 1.08296 1.69935 1.70581 1.23864 1.08912 1.18536
1.21009 0.87941 0.97133 1.07022 1.20026 1.06028 0.89297 0.93512
1.21044 0.76192 0.82088 0.91708 1.90657 1.52719 1.56346 1.48401
1.46210 1.66651 1.12091 1.10234 1.18314 0.93014 0.93475 0.78435
0.99204 1.21872 0.98111 0.96335 1.02723 1.21571 1.50438 0.91584
0.94835 0.90647 1.25835 0.94219 1.03760 0.94960 1.70065 1.48957
1.37619 0.99128 0.85327 0.77866 0.78691 0.78343 1.20607 1.20901
1.18067 0.88552 0.85786 0.89855 0.82454 0.80020 0.77646 0.83036
0.85915 0.75605 0.93544 0.91750 0.96906 0.92594
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.30 9.94 71.23 0.71 -0.60 16
2 C -0.03 -0.88 7.38 24.82 0.18 -0.69 16
3 O -0.20 -6.27 10.79 -10.87 -0.12 -6.39 16
4 C 0.24 8.08 8.09 87.04 0.70 8.78 16
5 C -0.17 -4.68 6.46 24.09 0.16 -4.53 16
6 C -0.09 -1.75 10.15 21.67 0.22 -1.53 16
7 C -0.14 -1.98 10.15 21.12 0.21 -1.76 16
8 C -0.19 -2.68 11.21 66.79 0.75 -1.93 16
9 S 0.17 3.86 23.30 -56.49 -1.32 2.55 16
10 N -0.49 -18.31 11.33 -293.47 -3.33 -21.63 16
11 C -0.01 -0.33 5.59 41.33 0.23 -0.10 16
12 C -0.05 -1.42 6.03 29.10 0.18 -1.24 16
13 C 0.50 20.63 7.79 87.66 0.68 21.32 16
14 O -0.60 -31.29 15.70 -3.05 -0.05 -31.34 16
15 N -0.70 -29.16 5.07 -446.09 -2.26 -31.42 16
16 C 0.27 14.31 2.56 44.25 0.11 14.42 16
17 H -0.01 -0.63 7.58 -2.39 -0.02 -0.65 16
18 C -0.13 -6.68 9.26 71.98 0.67 -6.02 16
19 C -0.55 -29.18 8.73 25.60 0.22 -28.95 16
20 H 0.08 3.73 7.74 -2.91 -0.02 3.70 16
21 C 0.01 0.66 5.30 84.66 0.45 1.11 16
22 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16
23 Si 0.97 42.36 29.54 68.60 2.03 44.38 16
24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16
25 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16
26 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16
27 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16
28 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16
29 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
30 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16
31 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16
32 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16
33 H 0.15 2.90 7.88 -2.39 -0.02 2.88 16
34 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16
35 H 0.41 13.68 8.54 -92.71 -0.79 12.89 16
36 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16
37 H 0.06 3.61 6.07 -2.39 -0.01 3.59 16
38 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16
39 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16
Total: -1.00 -80.34 356.13 0.97 -79.37
By element:
Atomic # 1 Polarization: 19.28 SS G_CDS: 0.30 Total: 19.58 kcal
Atomic # 6 Polarization: -7.19 SS G_CDS: 5.48 Total: -1.72 kcal
Atomic # 7 Polarization: -101.09 SS G_CDS: -5.34 Total: -106.44 kcal
Atomic # 8 Polarization: -37.56 SS G_CDS: -0.17 Total: -37.72 kcal
Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.38 kcal
Atomic # 16 Polarization: 3.86 SS G_CDS: -1.32 Total: 2.55 kcal
Total: -80.34 0.97 -79.37 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000194648663.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 66.689 kcal
(2) G-P(sol) polarization free energy of solvation -80.343 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.654 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.973 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.370 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.680 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds