Wall clock time and date at job start Tue Mar 31 2020 12:47:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86794 * 120.00581 * 2 1
4 4 H 1.48500 * 109.47360 * 239.99941 * 3 2 1
5 5 H 1.48498 * 109.46962 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47440 * 119.99673 * 3 2 1
7 7 C 1.37880 * 119.99692 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00430 * 180.02562 * 7 2 1
9 9 C 1.50704 * 119.99850 * 0.02562 * 7 2 1
10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2
11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7
12 12 C 1.50701 * 109.46992 * 269.99655 * 11 10 9
13 13 C 1.34518 * 125.78832 * 89.71314 * 12 11 10
14 14 C 1.41377 * 106.83972 * 179.88997 * 13 12 11
15 15 C 1.34513 * 106.84156 * 0.37021 * 14 13 12
16 16 O 1.34300 * 125.78840 * 270.02396 * 12 11 10
17 17 C 1.34781 * 119.99832 * 269.99817 * 10 9 7
18 18 O 1.21279 * 120.00132 * 0.02562 * 17 10 9
19 19 C 1.50694 * 120.00287 * 180.02562 * 17 10 9
20 20 C 1.53000 * 109.47706 * 180.02562 * 19 17 10
21 21 C 1.50695 * 109.47173 * 180.02562 * 20 19 17
22 22 N 1.29028 * 124.91578 * 89.69945 * 21 20 19
23 23 C 1.31786 * 117.12441 * 179.80590 * 22 21 20
24 24 C 1.33642 * 114.49618 * 0.47848 * 23 22 21
25 25 S 1.70975 * 124.91523 * 269.99615 * 21 20 19
26 26 H 0.96996 * 119.99637 * 359.97438 * 1 2 3
27 27 H 1.08992 * 109.46915 * 60.00270 * 9 7 2
28 28 H 1.08994 * 109.47284 * 299.99534 * 9 7 2
29 29 H 1.09002 * 109.47391 * 149.99645 * 11 10 9
30 30 H 1.09001 * 109.46813 * 29.99701 * 11 10 9
31 31 H 1.08007 * 126.57748 * 0.02871 * 13 12 11
32 32 H 1.07997 * 126.57885 * 180.16682 * 14 13 12
33 33 H 1.08002 * 125.78655 * 179.74823 * 15 14 13
34 34 H 1.09000 * 109.47004 * 300.00293 * 19 17 10
35 35 H 1.09005 * 109.47052 * 59.99843 * 19 17 10
36 36 H 1.09000 * 109.47090 * 300.00193 * 20 19 17
37 37 H 1.08997 * 109.46473 * 60.00049 * 20 19 17
38 38 H 1.07999 * 122.75167 * 180.22479 * 23 22 21
39 39 H 1.08001 * 126.03237 * 179.71682 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 3.1031 1.6962 -1.2125
5 1 1.2844 2.7464 -0.0006
6 1 3.1030 1.6963 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1942 0.0010
9 6 1.2508 -2.4992 0.0005
10 7 2.2028 -3.6127 0.0018
11 6 2.6779 -4.1690 1.2711
12 6 3.9207 -3.4366 1.7067
13 6 3.9548 -2.3325 2.4745
14 6 5.3164 -1.9877 2.6358
15 6 6.0325 -2.8968 1.9502
16 8 5.1819 -3.7719 1.3894
17 6 2.6416 -4.1255 -1.1649
18 8 2.2487 -3.6648 -2.2157
19 6 3.6204 -5.2713 -1.1638
20 6 3.9535 -5.6591 -2.6058
21 6 4.9318 -6.8053 -2.6045
22 7 4.6065 -8.0539 -2.5995
23 6 5.5900 -8.9311 -2.6031
24 6 6.8130 -8.3923 -2.6015
25 16 6.6335 -6.6395 -2.6023
26 1 -0.4849 0.8400 0.0004
27 1 0.6246 -2.5571 -0.8896
28 1 0.6239 -2.5567 0.8903
29 1 2.9062 -5.2269 1.1413
30 1 1.9039 -4.0548 2.0300
31 1 3.1051 -1.8111 2.8900
32 1 5.7064 -1.1526 3.1986
33 1 7.1089 -2.9189 1.8648
34 1 4.5326 -4.9693 -0.6492
35 1 3.1792 -6.1255 -0.6500
36 1 3.0415 -5.9609 -3.1208
37 1 4.3948 -4.8048 -3.1190
38 1 5.4215 -9.9979 -2.6030
39 1 7.7465 -8.9355 -2.5995
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000299517088.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:13
Heat of formation + Delta-G solvation = 26.498952 kcal
Electronic energy + Delta-G solvation = -24420.533480 eV
Core-core repulsion = 20843.112133 eV
Total energy + Delta-G solvation = -3577.421347 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-42.12612 -39.80816 -39.03661 -35.31910 -33.78594 -32.66054 -32.51260 -30.04903
-29.78896 -27.70010 -26.03082 -25.16831 -23.56604 -22.10972 -21.30508 -20.32687
-19.94830 -18.50563 -18.08978 -17.17265 -16.63647 -16.30640 -15.60427 -15.47451
-15.27409 -15.09697 -14.57911 -14.34971 -14.06487 -13.69940 -13.35709 -12.93753
-12.54336 -12.43459 -12.38540 -12.23368 -12.03642 -11.92110 -11.59993 -11.45080
-11.19979 -11.00677 -10.90875 -10.59330 -10.20885 -9.71621 -9.70801 -9.51515
-9.40382 -9.13190 -8.87133 -8.42484 -8.13193 -7.76897 -6.03100 -4.05779
0.59494 1.26411 1.66524 2.08922 2.72657 3.04026 3.24526 3.32637
3.37006 3.40450 3.49981 3.84781 4.17292 4.46735 4.86681 5.00972
5.05553 5.11750 5.14614 5.25496 5.31627 5.36239 5.39472 5.46751
5.60704 5.74706 5.79047 5.91571 6.08433 6.17658 6.22873 6.43799
6.49217 6.93691 6.98358 7.39067 7.45728 7.57136 7.64621 7.93759
8.23713 8.28152 8.88343 9.03300 9.58561 11.05403
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.014905 B = 0.003960 C = 0.003541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1878.052663 B = 7069.411551 C = 7906.115105
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.896 5.896
2 C 0.062 3.938
3 Si 0.893 3.107
4 H -0.278 1.278
5 H -0.287 1.287
6 H -0.277 1.277
7 C -0.517 4.517
8 H 0.058 0.942
9 C 0.245 3.755
10 N -0.594 5.594
11 C 0.195 3.805
12 C -0.030 4.030
13 C -0.169 4.169
14 C -0.213 4.213
15 C -0.054 4.054
16 O -0.180 6.180
17 C 0.513 3.487
18 O -0.533 6.533
19 C -0.137 4.137
20 C -0.030 4.030
21 C 0.064 3.936
22 N -0.477 5.477
23 C 0.040 3.960
24 C -0.271 4.271
25 S 0.122 5.878
26 H 0.263 0.737
27 H 0.046 0.954
28 H 0.033 0.967
29 H 0.082 0.918
30 H 0.108 0.892
31 H 0.150 0.850
32 H 0.141 0.859
33 H 0.195 0.805
34 H 0.094 0.906
35 H 0.093 0.907
36 H 0.103 0.897
37 H 0.094 0.906
38 H 0.174 0.826
39 H 0.175 0.825
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.664 -14.460 2.036 19.998
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.536 5.536
2 C -0.139 4.139
3 Si 0.721 3.279
4 H -0.203 1.203
5 H -0.213 1.213
6 H -0.202 1.202
7 C -0.555 4.555
8 H 0.077 0.923
9 C 0.126 3.874
10 N -0.326 5.326
11 C 0.070 3.930
12 C -0.081 4.081
13 C -0.189 4.189
14 C -0.232 4.232
15 C -0.122 4.122
16 O -0.077 6.077
17 C 0.299 3.701
18 O -0.410 6.410
19 C -0.179 4.179
20 C -0.071 4.071
21 C -0.213 4.213
22 N -0.192 5.192
23 C -0.112 4.112
24 C -0.410 4.410
25 S 0.376 5.624
26 H 0.072 0.928
27 H 0.064 0.936
28 H 0.051 0.949
29 H 0.100 0.900
30 H 0.126 0.874
31 H 0.168 0.832
32 H 0.159 0.841
33 H 0.212 0.788
34 H 0.113 0.887
35 H 0.111 0.889
36 H 0.122 0.878
37 H 0.113 0.887
38 H 0.191 0.809
39 H 0.192 0.808
Dipole moment (debyes) X Y Z Total
from point charges 13.453 -13.629 1.282 19.193
hybrid contribution 0.639 0.363 0.288 0.789
sum 14.092 -13.266 1.569 19.417
Atomic orbital electron populations
1.69914 1.05916 1.27003 1.50744 1.24882 0.94773 0.99004 0.95279
0.86635 0.79577 0.83052 0.78667 1.20324 1.21304 1.20213 1.21361
0.93362 0.90332 1.50491 0.92341 1.19375 0.87206 0.82215 0.98587
1.48339 1.45090 1.35733 1.03417 1.19833 0.89424 0.95456 0.88242
1.22974 0.83865 0.99855 1.01389 1.21616 0.97377 0.97059 1.02833
1.21816 0.93914 1.02086 1.05422 1.23830 0.95483 0.92513 1.00361
1.83945 1.15987 1.47723 1.60040 1.20200 0.81877 0.83803 0.84182
1.90686 1.57877 1.61840 1.30632 1.21735 1.00530 0.98473 0.97154
1.20039 0.97264 0.92194 0.97618 1.27254 0.96549 0.95863 1.01657
1.66323 1.35999 1.00378 1.16483 1.21823 0.86790 1.00748 1.01806
1.27069 1.03332 0.96639 1.13975 1.84175 1.05916 1.04826 1.67473
0.92758 0.93555 0.94894 0.90010 0.87382 0.83218 0.84102 0.78850
0.88733 0.88884 0.87835 0.88718 0.80913 0.80790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -26.12 13.29 55.43 0.74 -25.38 16
2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16
3 Si 0.89 21.83 29.54 -169.99 -5.02 16.80 16
4 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16
5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16
7 C -0.52 -14.12 9.12 -34.44 -0.31 -14.43 16
8 H 0.06 1.64 7.63 -52.49 -0.40 1.24 16
9 C 0.24 6.12 5.20 -5.19 -0.03 6.09 16
10 N -0.59 -12.03 2.44 -176.44 -0.43 -12.46 16
11 C 0.20 3.08 5.78 -5.19 -0.03 3.05 16
12 C -0.03 -0.50 6.85 -35.62 -0.24 -0.75 16
13 C -0.17 -2.95 10.36 -39.70 -0.41 -3.36 16
14 C -0.21 -3.28 10.91 -39.70 -0.43 -3.71 16
15 C -0.05 -0.75 12.09 29.42 0.36 -0.40 16
16 O -0.18 -2.85 9.55 5.70 0.05 -2.79 16
17 C 0.51 10.29 7.67 -10.99 -0.08 10.21 16
18 O -0.53 -12.89 15.56 5.56 0.09 -12.81 16
19 C -0.14 -2.06 4.23 -27.89 -0.12 -2.18 16
20 C -0.03 -0.43 5.09 -27.89 -0.14 -0.57 16
21 C 0.06 0.84 6.64 -13.46 -0.09 0.75 16
22 N -0.48 -6.39 10.54 -11.86 -0.13 -6.52 16
23 C 0.04 0.42 11.35 -19.18 -0.22 0.20 16
24 C -0.27 -2.51 11.37 29.12 0.33 -2.18 16
25 S 0.12 1.31 23.18 -107.50 -2.49 -1.18 16
26 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
27 H 0.05 1.32 7.42 -51.93 -0.39 0.93 16
28 H 0.03 0.82 7.89 -51.93 -0.41 0.41 16
29 H 0.08 1.04 6.44 -51.93 -0.33 0.71 16
30 H 0.11 1.55 7.89 -51.93 -0.41 1.14 16
31 H 0.15 2.70 8.06 -52.48 -0.42 2.28 16
32 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16
33 H 0.19 1.88 8.06 -52.49 -0.42 1.46 16
34 H 0.09 1.38 6.92 -51.93 -0.36 1.02 16
35 H 0.09 1.24 7.40 -51.93 -0.38 0.86 16
36 H 0.10 1.56 8.10 -51.93 -0.42 1.14 16
37 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16
38 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16
39 H 0.17 1.09 8.06 -52.49 -0.42 0.67 16
LS Contribution 353.93 15.07 5.33 5.33
Total: -1.00 -33.52 353.93 -8.15 -41.67
By element:
Atomic # 1 Polarization: 7.73 SS G_CDS: -4.77 Total: 2.96 kcal
Atomic # 6 Polarization: -4.10 SS G_CDS: -1.52 Total: -5.63 kcal
Atomic # 7 Polarization: -44.54 SS G_CDS: 0.18 Total: -44.36 kcal
Atomic # 8 Polarization: -15.74 SS G_CDS: 0.14 Total: -15.60 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal
Atomic # 16 Polarization: 1.31 SS G_CDS: -2.49 Total: -1.18 kcal
Total LS contribution 5.33 Total: 5.33 kcal
Total: -33.52 -8.15 -41.67 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299517088.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.167 kcal
(2) G-P(sol) polarization free energy of solvation -33.516 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.652 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.153 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.669 kcal
(6) G-S(sol) free energy of system = (1) + (5) 26.499 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds