Wall clock time and date at job start Tue Mar 31 2020 12:47:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86794 * 120.00581 * 2 1
4 4 H 1.48500 * 109.47360 * 239.99941 * 3 2 1
5 5 H 1.48498 * 109.46962 * 359.97438 * 3 2 1
6 6 H 1.48496 * 109.47440 * 119.99673 * 3 2 1
7 7 C 1.37880 * 119.99692 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00430 * 180.02562 * 7 2 1
9 9 C 1.50704 * 119.99850 * 0.02562 * 7 2 1
10 10 N 1.46504 * 109.46773 * 180.02562 * 9 7 2
11 11 C 1.46499 * 120.00381 * 90.00257 * 10 9 7
12 12 C 1.50701 * 109.46992 * 269.99655 * 11 10 9
13 13 C 1.34518 * 125.78832 * 89.71314 * 12 11 10
14 14 C 1.41377 * 106.83972 * 179.88997 * 13 12 11
15 15 C 1.34513 * 106.84156 * 0.37021 * 14 13 12
16 16 O 1.34300 * 125.78840 * 270.02396 * 12 11 10
17 17 C 1.34781 * 119.99832 * 269.99817 * 10 9 7
18 18 O 1.21279 * 120.00132 * 0.02562 * 17 10 9
19 19 C 1.50694 * 120.00287 * 180.02562 * 17 10 9
20 20 C 1.53000 * 109.47706 * 180.02562 * 19 17 10
21 21 C 1.50695 * 109.47173 * 180.02562 * 20 19 17
22 22 N 1.29028 * 124.91578 * 89.69945 * 21 20 19
23 23 C 1.31786 * 117.12441 * 179.80590 * 22 21 20
24 24 C 1.33642 * 114.49618 * 0.47848 * 23 22 21
25 25 S 1.70975 * 124.91523 * 269.99615 * 21 20 19
26 26 H 0.96996 * 119.99637 * 359.97438 * 1 2 3
27 27 H 1.08992 * 109.46915 * 60.00270 * 9 7 2
28 28 H 1.08994 * 109.47284 * 299.99534 * 9 7 2
29 29 H 1.09002 * 109.47391 * 149.99645 * 11 10 9
30 30 H 1.09001 * 109.46813 * 29.99701 * 11 10 9
31 31 H 1.08007 * 126.57748 * 0.02871 * 13 12 11
32 32 H 1.07997 * 126.57885 * 180.16682 * 14 13 12
33 33 H 1.08002 * 125.78655 * 179.74823 * 15 14 13
34 34 H 1.09000 * 109.47004 * 300.00293 * 19 17 10
35 35 H 1.09005 * 109.47052 * 59.99843 * 19 17 10
36 36 H 1.09000 * 109.47090 * 300.00193 * 20 19 17
37 37 H 1.08997 * 109.46473 * 60.00049 * 20 19 17
38 38 H 1.07999 * 122.75167 * 180.22479 * 23 22 21
39 39 H 1.08001 * 126.03237 * 179.71682 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2493 1.6176 0.0000
4 1 3.1031 1.6962 -1.2125
5 1 1.2844 2.7464 -0.0006
6 1 3.1030 1.6963 1.2125
7 6 2.0045 -1.1941 0.0005
8 1 3.0844 -1.1942 0.0010
9 6 1.2508 -2.4992 0.0005
10 7 2.2028 -3.6127 0.0018
11 6 2.6779 -4.1690 1.2711
12 6 3.9207 -3.4366 1.7067
13 6 3.9548 -2.3325 2.4745
14 6 5.3164 -1.9877 2.6358
15 6 6.0325 -2.8968 1.9502
16 8 5.1819 -3.7719 1.3894
17 6 2.6416 -4.1255 -1.1649
18 8 2.2487 -3.6648 -2.2157
19 6 3.6204 -5.2713 -1.1638
20 6 3.9535 -5.6591 -2.6058
21 6 4.9318 -6.8053 -2.6045
22 7 4.6065 -8.0539 -2.5995
23 6 5.5900 -8.9311 -2.6031
24 6 6.8130 -8.3923 -2.6015
25 16 6.6335 -6.6395 -2.6023
26 1 -0.4849 0.8400 0.0004
27 1 0.6246 -2.5571 -0.8896
28 1 0.6239 -2.5567 0.8903
29 1 2.9062 -5.2269 1.1413
30 1 1.9039 -4.0548 2.0300
31 1 3.1051 -1.8111 2.8900
32 1 5.7064 -1.1526 3.1986
33 1 7.1089 -2.9189 1.8648
34 1 4.5326 -4.9693 -0.6492
35 1 3.1792 -6.1255 -0.6500
36 1 3.0415 -5.9609 -3.1208
37 1 4.3948 -4.8048 -3.1190
38 1 5.4215 -9.9979 -2.6030
39 1 7.7465 -8.9355 -2.5995
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000299517088.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:47:12
Heat of formation + Delta-G solvation = 5.768821 kcal
Electronic energy + Delta-G solvation = -24421.432406 eV
Core-core repulsion = 20843.112133 eV
Total energy + Delta-G solvation = -3578.320273 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 320.098 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-43.33708 -40.91715 -40.40196 -36.96337 -35.10019 -34.60065 -33.74874 -31.48007
-30.82451 -29.38012 -27.25353 -26.58075 -25.00415 -23.60175 -22.52742 -21.59447
-20.81760 -20.01094 -19.01813 -18.75874 -18.27122 -17.78045 -17.14158 -16.69774
-16.50629 -16.29144 -16.21187 -15.50092 -15.34518 -14.85664 -14.65690 -14.26235
-14.07979 -13.90872 -13.65418 -13.51319 -13.47229 -13.31885 -13.08007 -12.91427
-12.68750 -12.50356 -12.37124 -12.21048 -12.15980 -11.73775 -10.74011 -10.67822
-10.59256 -10.58087 -10.34001 -9.80680 -9.67047 -9.23784 -8.18307 -6.28192
-0.24463 0.43819 0.85534 0.86349 1.35682 1.38630 1.45560 1.69074
1.84510 1.89485 2.24030 2.33899 2.47876 3.12597 3.17065 3.66972
3.86756 3.96011 4.00248 4.15829 4.27635 4.27914 4.42773 4.44953
4.52078 4.58673 4.61178 4.81332 4.98070 5.02412 5.04740 5.17230
5.26720 5.27914 5.33504 5.56673 5.71844 5.82772 6.11525 6.32360
6.63778 6.79462 6.81041 7.29333 7.44564 8.89308
Molecular weight = 320.10amu
Principal moments of inertia in cm(-1)
A = 0.014905 B = 0.003960 C = 0.003541
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1878.052663 B = 7069.411551 C = 7906.115105
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.012 3.988
3 Si 0.952 3.048
4 H -0.282 1.282
5 H -0.281 1.281
6 H -0.263 1.263
7 C -0.518 4.518
8 H 0.049 0.951
9 C 0.260 3.740
10 N -0.597 5.597
11 C 0.191 3.809
12 C -0.043 4.043
13 C -0.192 4.192
14 C -0.235 4.235
15 C -0.037 4.037
16 O -0.183 6.183
17 C 0.505 3.495
18 O -0.585 6.585
19 C -0.117 4.117
20 C -0.024 4.024
21 C 0.036 3.964
22 N -0.499 5.499
23 C 0.019 3.981
24 C -0.249 4.249
25 S 0.141 5.859
26 H 0.265 0.735
27 H 0.003 0.997
28 H 0.029 0.971
29 H 0.119 0.881
30 H 0.118 0.882
31 H 0.133 0.867
32 H 0.158 0.842
33 H 0.240 0.760
34 H 0.106 0.894
35 H 0.115 0.885
36 H 0.086 0.914
37 H 0.085 0.915
38 H 0.199 0.801
39 H 0.210 0.790
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.986 -15.851 2.812 23.403
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.186 4.186
3 Si 0.778 3.222
4 H -0.208 1.208
5 H -0.206 1.206
6 H -0.187 1.187
7 C -0.557 4.557
8 H 0.067 0.933
9 C 0.139 3.861
10 N -0.328 5.328
11 C 0.068 3.932
12 C -0.093 4.093
13 C -0.212 4.212
14 C -0.254 4.254
15 C -0.104 4.104
16 O -0.079 6.079
17 C 0.294 3.706
18 O -0.465 6.465
19 C -0.158 4.158
20 C -0.065 4.065
21 C -0.240 4.240
22 N -0.215 5.215
23 C -0.131 4.131
24 C -0.388 4.388
25 S 0.394 5.606
26 H 0.073 0.927
27 H 0.021 0.979
28 H 0.047 0.953
29 H 0.137 0.863
30 H 0.136 0.864
31 H 0.151 0.849
32 H 0.176 0.824
33 H 0.256 0.744
34 H 0.124 0.876
35 H 0.133 0.867
36 H 0.105 0.895
37 H 0.104 0.896
38 H 0.215 0.785
39 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges 16.792 -15.048 2.097 22.645
hybrid contribution -0.303 0.725 0.051 0.787
sum 16.489 -14.323 2.148 21.947
Atomic orbital electron populations
1.70024 1.07254 1.27830 1.51756 1.25661 0.95573 1.02333 0.95070
0.85694 0.78491 0.79263 0.78781 1.20770 1.20596 1.18721 1.21511
0.92888 0.91463 1.49827 0.93251 1.18852 0.87616 0.83471 0.96178
1.48283 1.44386 1.34587 1.05514 1.20127 0.89602 0.97090 0.86366
1.22913 0.84541 1.00048 1.01844 1.21727 0.98224 0.97639 1.03649
1.22093 0.93081 1.03518 1.06736 1.24697 0.97017 0.90721 0.97958
1.83947 1.15681 1.48167 1.60111 1.21116 0.81851 0.84446 0.83184
1.90654 1.59759 1.63664 1.32441 1.21616 0.99248 0.96674 0.98276
1.19820 0.97209 0.92738 0.96732 1.26856 0.97611 0.95390 1.04177
1.66297 1.37815 1.00861 1.16501 1.22240 0.86735 1.01624 1.02489
1.27516 1.04329 0.95723 1.11220 1.84087 1.03648 1.06177 1.66704
0.92655 0.97902 0.95280 0.86314 0.86371 0.84923 0.82432 0.74367
0.87569 0.86675 0.89504 0.89643 0.78453 0.77343
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.56 13.29 21.45 0.28 -55.27 16
2 C 0.01 0.70 5.46 84.66 0.46 1.16 16
3 Si 0.95 45.22 29.54 68.60 2.03 47.24 16
4 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16
5 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16
6 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16
7 C -0.52 -29.10 9.12 25.60 0.23 -28.87 16
8 H 0.05 2.82 7.63 -2.91 -0.02 2.80 16
9 C 0.26 13.56 5.20 85.63 0.45 14.00 16
10 N -0.60 -24.67 2.44 -830.51 -2.03 -26.69 16
11 C 0.19 5.89 5.78 85.63 0.50 6.39 16
12 C -0.04 -1.39 6.85 24.83 0.17 -1.22 16
13 C -0.19 -6.64 10.36 22.19 0.23 -6.41 16
14 C -0.24 -6.79 10.91 22.19 0.24 -6.55 16
15 C -0.04 -0.90 12.09 66.97 0.81 -0.09 16
16 O -0.18 -5.30 9.55 -2.50 -0.02 -5.32 16
17 C 0.50 20.72 7.67 87.65 0.67 21.39 16
18 O -0.58 -29.67 15.56 -3.02 -0.05 -29.72 16
19 C -0.12 -3.43 4.23 29.85 0.13 -3.30 16
20 C -0.02 -0.68 5.09 29.85 0.15 -0.53 16
21 C 0.04 0.91 6.64 88.52 0.59 1.49 16
22 N -0.50 -12.56 10.54 -191.45 -2.02 -14.58 16
23 C 0.02 0.35 11.35 83.66 0.95 1.30 16
24 C -0.25 -3.68 11.37 66.78 0.76 -2.92 16
25 S 0.14 2.67 23.18 -56.49 -1.31 1.36 16
26 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16
27 H 0.00 0.17 7.42 -2.39 -0.02 0.16 16
28 H 0.03 1.52 7.89 -2.39 -0.02 1.50 16
29 H 0.12 2.76 6.44 -2.39 -0.02 2.74 16
30 H 0.12 3.36 7.89 -2.39 -0.02 3.34 16
31 H 0.13 4.94 8.06 -2.91 -0.02 4.91 16
32 H 0.16 3.87 8.06 -2.91 -0.02 3.84 16
33 H 0.24 3.43 8.06 -2.91 -0.02 3.41 16
34 H 0.11 2.90 6.92 -2.39 -0.02 2.89 16
35 H 0.12 2.87 7.40 -2.38 -0.02 2.85 16
36 H 0.09 2.73 8.10 -2.39 -0.02 2.71 16
37 H 0.09 2.55 8.10 -2.39 -0.02 2.53 16
38 H 0.20 2.42 8.06 -2.91 -0.02 2.39 16
39 H 0.21 1.54 8.06 -2.91 -0.02 1.51 16
Total: -1.00 -75.70 353.93 4.29 -71.41
By element:
Atomic # 1 Polarization: 14.66 SS G_CDS: 1.07 Total: 15.73 kcal
Atomic # 6 Polarization: -10.49 SS G_CDS: 6.33 Total: -4.15 kcal
Atomic # 7 Polarization: -92.79 SS G_CDS: -3.76 Total: -96.55 kcal
Atomic # 8 Polarization: -34.97 SS G_CDS: -0.07 Total: -35.04 kcal
Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal
Atomic # 16 Polarization: 2.67 SS G_CDS: -1.31 Total: 1.36 kcal
Total: -75.70 4.29 -71.41 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000299517088.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.178 kcal
(2) G-P(sol) polarization free energy of solvation -75.697 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.481 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.288 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.409 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.769 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds