Wall clock time and date at job start Tue Mar 31 2020 13:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.29428 * 124.80571 * 2 1 4 4 C 1.30947 * 117.36376 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.90257 * 179.97438 * 4 3 2 6 6 C 1.35654 * 114.19085 * 0.02562 * 4 3 2 7 7 C 1.46684 * 126.12989 * 180.02562 * 6 4 3 8 8 O 1.21693 * 120.00034 * 351.74851 * 7 6 4 9 9 N 1.34776 * 120.00312 * 171.74580 * 7 6 4 10 10 C 1.46501 * 119.99800 * 2.36673 * 9 7 6 11 11 C 1.50710 * 109.47199 * 82.19686 * 10 9 7 12 12 H 1.07997 * 119.99474 * 0.02562 * 11 10 9 13 13 C 1.37872 * 120.00016 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00154 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99960 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47194 * 90.00559 * 15 13 11 17 17 H 1.48504 * 109.47102 * 210.00542 * 15 13 11 18 18 H 1.48504 * 109.47200 * 330.00278 * 15 13 11 19 19 C 1.46497 * 120.00244 * 182.36044 * 9 7 6 20 20 C 1.50699 * 109.46784 * 90.00615 * 19 9 7 21 21 C 1.34518 * 125.79315 * 89.99912 * 20 19 9 22 22 C 1.41387 * 106.83923 * 180.02562 * 21 20 19 23 23 C 1.34510 * 106.84084 * 359.97438 * 22 21 20 24 24 O 1.34302 * 108.42390 * 359.74050 * 23 22 21 25 25 S 1.70959 * 124.80455 * 179.97438 * 2 1 3 26 26 H 1.09003 * 109.46982 * 90.02307 * 1 2 3 27 27 H 1.09000 * 109.47255 * 210.02294 * 1 2 3 28 28 H 1.09001 * 109.46972 * 330.02875 * 1 2 3 29 29 H 1.09002 * 109.47136 * 90.02239 * 5 4 3 30 30 H 1.08998 * 109.47214 * 210.02581 * 5 4 3 31 31 H 1.09000 * 109.47331 * 330.02445 * 5 4 3 32 32 H 1.08997 * 109.47064 * 202.19556 * 10 9 7 33 33 H 1.09000 * 109.47443 * 322.20205 * 10 9 7 34 34 H 0.96991 * 120.00239 * 179.97438 * 14 13 11 35 35 H 1.08999 * 109.47445 * 210.00281 * 19 9 7 36 36 H 1.08999 * 109.47603 * 330.00922 * 19 9 7 37 37 H 1.07999 * 126.57510 * 0.03671 * 21 20 19 38 38 H 1.07999 * 126.57170 * 179.97438 * 22 21 20 39 39 H 1.08006 * 125.78567 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2457 1.0627 0.0000 4 6 3.5441 0.8931 -0.0005 5 6 4.5197 2.0417 -0.0012 6 6 3.9351 -0.4059 -0.0015 7 6 5.3188 -0.8926 -0.0018 8 8 6.2389 -0.1106 -0.1523 9 7 5.5712 -2.2060 0.1647 10 6 4.4621 -3.1544 0.2940 11 6 3.9459 -3.5136 -1.0756 12 1 4.3991 -3.0791 -1.9544 13 6 2.8960 -4.3975 -1.2067 14 7 2.3446 -4.9269 -0.1365 15 14 2.2567 -4.8432 -2.9043 16 1 2.9925 -6.0276 -3.4151 17 1 0.8080 -5.1586 -2.8206 18 1 2.4613 -3.6976 -3.8268 19 6 6.9546 -2.6853 0.2163 20 6 7.4389 -2.6692 1.6432 21 6 7.3327 -3.6825 2.5216 22 6 7.9130 -3.2379 3.7318 23 6 8.3395 -1.9799 3.5205 24 8 8.0551 -1.6428 2.2519 25 16 2.4827 -1.4038 0.0006 26 1 -0.3633 -0.0004 -1.0277 27 1 -0.3634 -0.8898 0.5142 28 1 -0.3633 0.8903 0.5134 29 1 4.7557 2.3185 1.0264 30 1 5.4329 1.7425 -0.5157 31 1 4.0763 2.8948 -0.5146 32 1 4.8114 -4.0553 0.7984 33 1 3.6609 -2.6994 0.8763 34 1 1.6057 -5.5485 -0.2287 35 1 7.0013 -3.7028 -0.1717 36 1 7.5869 -2.0361 -0.3893 37 1 6.8895 -4.6500 2.3375 38 1 7.9975 -3.8006 4.6498 39 1 8.8317 -1.3495 4.2464 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299526513.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:42 Heat of formation + Delta-G solvation = 26.333651 kcal Electronic energy + Delta-G solvation = -25035.260414 eV Core-core repulsion = 21457.831899 eV Total energy + Delta-G solvation = -3577.428515 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.23651 -39.58427 -38.50078 -35.36861 -33.17565 -32.61214 -32.29102 -30.65056 -28.67366 -27.76145 -27.63611 -25.20276 -23.32453 -22.19905 -21.41276 -20.98748 -19.88331 -17.81339 -17.43223 -17.24778 -16.65625 -16.01471 -15.78061 -15.10721 -14.85413 -14.62062 -14.42356 -13.93321 -13.57096 -13.08643 -12.88376 -12.73685 -12.55252 -12.54006 -12.45265 -12.39678 -12.27931 -11.89791 -11.57295 -11.50524 -11.41719 -11.12166 -10.94322 -10.42865 -10.30523 -10.06699 -9.64044 -9.27949 -8.99771 -8.53390 -8.45863 -8.31203 -8.12210 -7.70810 -6.45813 -4.49653 1.05891 1.95743 2.23158 2.63313 2.85192 3.08872 3.11562 3.17435 3.21829 3.33389 3.83537 3.94138 4.14230 4.71283 4.88508 5.00131 5.21408 5.29471 5.41514 5.52319 5.69844 5.75583 5.78060 5.82733 5.93167 6.05122 6.12670 6.15166 6.20022 6.32155 6.37039 6.43085 6.49356 6.76712 6.80679 6.96701 7.20793 7.45429 7.49825 7.66226 8.00914 8.45274 8.51247 8.79903 9.11659 10.58533 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.010379 B = 0.006425 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.987493 B = 4357.127256 C = 6109.933217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.063 4.063 3 N -0.500 5.500 4 C 0.125 3.875 5 C -0.082 4.082 6 C -0.326 4.326 7 C 0.601 3.399 8 O -0.550 6.550 9 N -0.594 5.594 10 C 0.229 3.771 11 C -0.540 4.540 12 H 0.070 0.930 13 C 0.077 3.923 14 N -0.874 5.874 15 Si 0.891 3.109 16 H -0.275 1.275 17 H -0.280 1.280 18 H -0.268 1.268 19 C 0.199 3.801 20 C -0.018 4.018 21 C -0.202 4.202 22 C -0.217 4.217 23 C -0.050 4.050 24 O -0.166 6.166 25 S 0.368 5.632 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.041 0.959 34 H 0.271 0.729 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 2.474 4.084 5.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.333 4.333 3 N -0.217 5.217 4 C -0.018 4.018 5 C -0.141 4.141 6 C -0.452 4.452 7 C 0.390 3.610 8 O -0.431 6.431 9 N -0.324 5.324 10 C 0.107 3.893 11 C -0.581 4.581 12 H 0.088 0.912 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.717 3.283 16 H -0.200 1.200 17 H -0.205 1.205 18 H -0.193 1.193 19 C 0.076 3.924 20 C -0.070 4.070 21 C -0.222 4.222 22 C -0.236 4.236 23 C -0.118 4.118 24 O -0.061 6.061 25 S 0.634 5.366 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.113 0.887 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 2.564 2.423 3.939 5.288 hybrid contribution -0.005 0.052 -0.535 0.538 sum 2.559 2.475 3.404 4.926 Atomic orbital electron populations 1.20277 0.86756 1.03107 1.02911 1.28402 1.02853 0.98606 1.03451 1.66075 1.03990 1.33237 1.18435 1.20326 0.90263 0.93189 0.98025 1.20516 0.97341 0.93784 1.02506 1.25485 0.99123 0.97922 1.22630 1.16815 0.86412 0.81948 0.75797 1.90667 1.45196 1.55264 1.52006 1.48064 1.06850 1.07091 1.70438 1.19717 0.83212 0.88435 0.97946 1.21525 1.17179 1.26986 0.92438 0.91167 1.24903 0.95827 0.94816 0.97410 1.69905 1.23697 1.28969 1.28439 0.86563 0.78444 0.79432 0.83850 1.20046 1.20528 1.19284 1.19701 0.83217 1.02308 0.87191 1.23195 0.99981 0.86342 0.97452 1.21669 1.06127 1.01098 0.93276 1.21788 1.05561 0.96439 0.99828 1.23980 1.05381 0.97433 0.85031 1.84108 1.59441 1.39571 1.22981 1.86500 0.91418 1.00361 1.58303 0.90528 0.90618 0.90615 0.91506 0.88507 0.91841 0.92750 0.94215 0.91870 0.86842 0.88732 0.83346 0.83824 0.78648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.46 36.00 0.38 -0.65 16 2 C -0.06 -1.20 7.39 -13.29 -0.10 -1.30 16 3 N -0.50 -10.19 10.50 -7.71 -0.08 -10.27 16 4 C 0.12 2.59 6.79 -83.89 -0.57 2.02 16 5 C -0.08 -1.49 9.80 36.00 0.35 -1.14 16 6 C -0.33 -7.08 6.23 -37.10 -0.23 -7.31 16 7 C 0.60 13.28 7.55 -12.85 -0.10 13.18 16 8 O -0.55 -12.57 13.83 5.19 0.07 -12.50 16 9 N -0.59 -12.31 2.46 -177.98 -0.44 -12.75 16 10 C 0.23 5.02 4.75 -5.19 -0.02 5.00 16 11 C -0.54 -12.54 7.00 -34.44 -0.24 -12.78 16 12 H 0.07 1.70 7.81 -52.49 -0.41 1.29 16 13 C 0.08 1.79 5.06 -17.82 -0.09 1.70 16 14 N -0.87 -20.95 13.29 55.43 0.74 -20.21 16 15 Si 0.89 18.68 29.54 -169.99 -5.02 13.66 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 17 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 C 0.20 3.55 5.92 -5.20 -0.03 3.52 16 20 C -0.02 -0.31 6.90 -35.62 -0.25 -0.56 16 21 C -0.20 -3.23 10.81 -39.70 -0.43 -3.65 16 22 C -0.22 -3.06 10.91 -39.70 -0.43 -3.49 16 23 C -0.05 -0.70 12.09 29.41 0.36 -0.34 16 24 O -0.17 -2.93 10.65 5.70 0.06 -2.87 16 25 S 0.37 7.58 16.14 -107.50 -1.74 5.84 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 1.84 5.85 -51.93 -0.30 1.54 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.22 8.01 -51.93 -0.42 0.80 16 33 H 0.04 0.93 4.51 -22.93 -0.10 0.83 16 34 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 35 H 0.11 1.80 8.07 -51.93 -0.42 1.38 16 36 H 0.09 1.67 7.39 -51.93 -0.38 1.29 16 37 H 0.15 2.22 8.06 -52.49 -0.42 1.80 16 38 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.20 1.92 8.06 -52.48 -0.42 1.49 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -28.07 344.23 -7.18 -35.25 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -4.55 Total: 4.47 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -1.41 Total: -5.81 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.22 Total: -43.23 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: 0.13 Total: -15.37 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.02 Total: 13.66 kcal Atomic # 16 Polarization: 7.58 SS G_CDS: -1.74 Total: 5.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.07 -7.18 -35.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299526513.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.580 kcal (2) G-P(sol) polarization free energy of solvation -28.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds