Wall clock time and date at job start Tue Mar 31 2020 12:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47207 * 331.46092 * 3 2 1 5 5 C 1.36862 * 119.99664 * 272.46767 * 4 3 2 6 6 H 1.08007 * 119.99818 * 187.91625 * 5 4 3 7 7 C 1.39047 * 120.00283 * 7.92136 * 5 4 3 8 8 N 1.31361 * 120.00122 * 24.68001 * 7 5 4 9 9 Si 1.86805 * 119.99778 * 204.68591 * 7 5 4 10 10 H 1.48502 * 109.46935 * 94.99129 * 9 7 5 11 11 H 1.48500 * 109.46911 * 214.98315 * 9 7 5 12 12 H 1.48499 * 109.47421 * 334.98676 * 9 7 5 13 13 C 1.34770 * 120.00196 * 92.46751 * 4 3 2 14 14 O 1.21615 * 120.00062 * 183.81366 * 13 4 3 15 15 C 1.47591 * 119.99904 * 3.81601 * 13 4 3 16 16 C 1.39999 * 119.86918 * 307.57846 * 15 13 4 17 17 C 1.36512 * 120.12172 * 180.02562 * 16 15 13 18 18 C 1.39315 * 120.05852 * 0.03724 * 17 16 15 19 19 C 1.40361 * 120.49787 * 359.96176 * 18 17 16 20 20 C 1.38645 * 119.23406 * 0.02562 * 19 18 17 21 21 O 1.35153 * 108.52258 * 180.02562 * 19 18 17 22 22 C 1.35092 * 111.51947 * 0.02562 * 21 19 18 23 23 C 1.39004 * 132.30358 * 180.02562 * 22 21 19 24 24 C 1.37882 * 120.09166 * 179.97438 * 23 22 21 25 25 C 1.38619 * 120.62903 * 359.97438 * 24 23 22 26 26 C 1.37874 * 120.14356 * 0.03767 * 25 24 23 27 27 C 1.39165 * 119.71461 * 359.92793 * 26 25 24 28 28 H 1.09004 * 109.46781 * 211.45709 * 3 2 1 29 29 H 1.08993 * 109.47187 * 91.46269 * 3 2 1 30 30 H 0.97005 * 119.99975 * 180.02562 * 8 7 5 31 31 H 1.08003 * 119.93568 * 0.02562 * 16 15 13 32 32 H 1.08009 * 119.96948 * 180.02562 * 17 16 15 33 33 H 1.08002 * 120.08886 * 179.97438 * 20 19 18 34 34 H 1.08005 * 119.95249 * 359.94682 * 23 22 21 35 35 H 1.08002 * 119.68272 * 179.97438 * 24 23 22 36 36 H 1.08001 * 119.93025 * 180.02562 * 25 24 23 37 37 H 1.07993 * 120.14312 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.2125 0.6599 5 6 3.2769 -1.2283 2.0165 6 1 3.7559 -2.0738 2.4879 7 6 2.8430 -0.1559 2.7880 8 7 1.8720 0.6151 2.3541 9 14 3.6411 0.1884 4.4415 10 1 4.7134 1.2017 4.2721 11 1 2.6184 0.7033 5.3871 12 1 4.2260 -1.0660 4.9797 13 6 3.3694 -2.3129 -0.0689 14 8 3.7087 -3.3408 0.4854 15 6 3.2562 -2.2705 -1.5399 16 6 2.0757 -1.8101 -2.1353 17 6 1.9652 -1.7692 -3.4953 18 6 3.0273 -2.1864 -4.2946 19 6 4.2173 -2.6505 -3.7127 20 6 4.3249 -2.6900 -2.3310 21 8 5.0754 -2.9878 -4.7009 22 6 4.5338 -2.7778 -5.9206 23 6 5.0227 -2.9716 -7.2073 24 6 4.2372 -2.6663 -8.2986 25 6 2.9559 -2.1653 -8.1285 26 6 2.4532 -1.9658 -6.8603 27 6 3.2371 -2.2712 -5.7516 28 1 2.9709 0.8775 0.5363 29 1 2.9714 0.0271 -1.0273 30 1 1.5696 1.3634 2.8922 31 1 1.2510 -1.4867 -1.5175 32 1 1.0535 -1.4132 -3.9521 33 1 5.2341 -3.0450 -1.8687 34 1 6.0194 -3.3614 -7.3524 35 1 4.6238 -2.8191 -9.2954 36 1 2.3502 -1.9304 -8.9913 37 1 1.4552 -1.5751 -6.7277 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351963319.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:13:17 Heat of formation + Delta-G solvation = 45.807182 kcal Electronic energy + Delta-G solvation = -25281.666847 eV Core-core repulsion = 21569.638817 eV Total energy + Delta-G solvation = -3712.028030 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 320.095 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.52479 -41.14044 -39.01420 -38.39587 -37.75270 -36.22720 -34.03251 -33.35544 -32.06812 -31.01136 -30.43430 -29.25497 -27.15133 -25.22607 -24.22870 -23.65551 -22.26037 -21.36155 -19.98351 -19.50602 -18.46694 -18.13399 -17.87230 -17.39611 -17.27131 -16.79967 -16.16946 -16.10689 -15.60352 -15.39563 -15.04005 -14.97520 -14.78072 -14.63953 -14.35138 -13.99258 -13.59385 -13.44479 -13.39181 -13.29861 -13.13048 -12.96972 -12.77907 -12.34797 -12.29646 -12.19039 -12.12133 -11.88267 -11.20882 -10.95872 -10.62917 -10.27568 -10.12553 -9.25931 -9.21143 -8.52884 -6.00892 -0.60659 -0.04810 0.51763 0.59772 1.33532 1.40609 1.48626 1.58985 1.73607 1.95855 2.19807 2.31360 2.47128 2.79001 2.86328 2.99709 3.26976 3.42897 3.50850 3.60207 3.74933 3.97878 4.03740 4.15978 4.23808 4.35761 4.44097 4.46556 4.49261 4.78256 4.80040 4.86292 5.04634 5.08063 5.21633 5.26599 5.39823 5.41227 5.42440 5.49185 5.74888 5.87222 6.11227 6.27784 6.93782 6.98071 7.19284 7.74972 8.50149 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.003237 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.251613 B = 8648.599298 C = 9335.438106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.264 3.736 3 C 0.219 3.781 4 N -0.433 5.433 5 C -0.349 4.349 6 H 0.090 0.910 7 C 0.012 3.988 8 N -0.880 5.880 9 Si 0.993 3.007 10 H -0.258 1.258 11 H -0.282 1.282 12 H -0.275 1.275 13 C 0.478 3.522 14 O -0.613 6.613 15 C -0.074 4.074 16 C -0.121 4.121 17 C -0.052 4.052 18 C -0.114 4.114 19 C 0.069 3.931 20 C -0.075 4.075 21 O -0.213 6.213 22 C 0.053 3.947 23 C -0.123 4.123 24 C -0.073 4.073 25 C -0.132 4.132 26 C -0.069 4.069 27 C -0.142 4.142 28 H 0.129 0.871 29 H 0.122 0.878 30 H 0.281 0.719 31 H 0.124 0.876 32 H 0.162 0.838 33 H 0.138 0.862 34 H 0.151 0.849 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.358 1.065 -22.075 22.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.178 5.178 2 C -0.053 4.053 3 C 0.092 3.908 4 N -0.150 5.150 5 C -0.476 4.476 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.517 5.517 9 Si 0.816 3.184 10 H -0.182 1.182 11 H -0.208 1.208 12 H -0.200 1.200 13 C 0.268 3.732 14 O -0.500 6.500 15 C -0.077 4.077 16 C -0.140 4.140 17 C -0.070 4.070 18 C -0.115 4.115 19 C 0.023 3.977 20 C -0.095 4.095 21 O -0.118 6.118 22 C 0.007 3.993 23 C -0.142 4.142 24 C -0.091 4.091 25 C -0.150 4.150 26 C -0.087 4.087 27 C -0.142 4.142 28 H 0.147 0.853 29 H 0.140 0.860 30 H 0.092 0.908 31 H 0.141 0.859 32 H 0.180 0.820 33 H 0.156 0.844 34 H 0.169 0.831 35 H 0.193 0.807 36 H 0.184 0.816 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 2.988 0.671 -21.650 21.865 hybrid contribution 0.533 0.002 1.739 1.819 sum 3.521 0.673 -19.911 20.231 Atomic orbital electron populations 1.80912 1.14063 1.09482 1.13327 1.29248 0.95410 0.91619 0.88991 1.19148 0.81047 0.91076 0.99508 1.43728 1.54690 1.09505 1.07084 1.19760 1.39282 1.06587 0.81945 0.89240 1.25964 0.94487 0.95487 1.03237 1.69874 1.22113 1.18589 1.41171 0.84925 0.78217 0.78722 0.76535 1.18238 1.20803 1.20018 1.18277 0.84727 0.83401 0.86766 1.90625 1.54574 1.31612 1.73210 1.19556 0.95056 1.00698 0.92403 1.21060 0.96763 1.00677 0.95506 1.20303 0.98123 0.97165 0.91370 1.19671 0.95149 1.04011 0.92709 1.19300 0.89016 1.00185 0.89182 1.19814 0.99899 1.01958 0.87806 1.84006 1.40795 1.73971 1.13014 1.20204 0.92658 1.00737 0.85685 1.20445 1.02775 1.04670 0.86282 1.21482 0.93380 0.95251 0.98950 1.21532 0.96555 0.99883 0.97016 1.20922 0.99908 0.97350 0.90494 1.19548 0.96025 1.06750 0.91923 0.85320 0.86013 0.90808 0.85853 0.82034 0.84390 0.83084 0.80738 0.81552 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.96 18.45 20.01 0.37 -22.59 16 2 C 0.26 11.50 10.55 89.44 0.94 12.44 16 3 C 0.22 8.79 4.76 84.57 0.40 9.19 16 4 N -0.43 -20.79 2.58 -649.00 -1.68 -22.46 16 5 C -0.35 -18.27 9.41 84.10 0.79 -17.48 16 6 H 0.09 5.07 7.32 -2.91 -0.02 5.05 16 7 C 0.01 0.58 4.92 84.96 0.42 1.00 16 8 N -0.88 -42.58 8.99 21.68 0.19 -42.38 16 9 Si 0.99 39.23 29.62 68.60 2.03 41.26 16 10 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 11 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 12 H -0.28 -11.23 7.11 99.48 0.71 -10.53 16 13 C 0.48 23.08 7.12 86.71 0.62 23.70 16 14 O -0.61 -34.49 16.66 -4.08 -0.07 -34.56 16 15 C -0.07 -2.88 4.75 -20.10 -0.10 -2.98 16 16 C -0.12 -4.16 7.61 22.29 0.17 -3.99 16 17 C -0.05 -1.47 10.02 22.13 0.22 -1.25 16 18 C -0.11 -3.36 6.38 -20.08 -0.13 -3.49 16 19 C 0.07 2.26 7.33 22.88 0.17 2.43 16 20 C -0.08 -2.70 9.75 22.65 0.22 -2.48 16 21 O -0.21 -6.57 10.58 -19.01 -0.20 -6.77 16 22 C 0.05 1.34 7.34 22.94 0.17 1.51 16 23 C -0.12 -2.13 10.06 22.37 0.22 -1.90 16 24 C -0.07 -0.82 10.01 22.28 0.22 -0.60 16 25 C -0.13 -1.54 10.04 22.27 0.22 -1.32 16 26 C -0.07 -1.19 10.09 22.41 0.23 -0.96 16 27 C -0.14 -3.53 6.38 -20.14 -0.13 -3.66 16 28 H 0.13 5.17 6.43 -2.38 -0.02 5.16 16 29 H 0.12 4.01 5.89 -2.39 -0.01 4.00 16 30 H 0.28 12.95 8.31 -92.70 -0.77 12.18 16 31 H 0.12 4.58 4.89 -2.91 -0.01 4.57 16 32 H 0.16 3.49 8.06 -2.91 -0.02 3.46 16 33 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 34 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.18 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.17 0.79 8.06 -2.91 -0.02 0.77 16 37 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.01 325.89 6.46 -62.55 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.15 Total: 14.79 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 4.67 Total: 10.16 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -1.11 Total: -87.44 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.27 Total: -41.33 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -69.01 6.46 -62.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351963319.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.356 kcal (2) G-P(sol) polarization free energy of solvation -69.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds