Wall clock time and date at job start Tue Mar 31 2020 13:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38365 * 119.92482 * 2 1 4 4 C 1.38371 * 120.29822 * 179.97438 * 3 2 1 5 5 C 1.50697 * 119.92119 * 180.02562 * 4 3 2 6 6 C 1.37948 * 120.14895 * 0.02562 * 4 3 2 7 7 C 1.39616 * 119.84958 * 0.02562 * 6 4 3 8 8 C 1.47745 * 120.14875 * 180.02562 * 7 6 4 9 9 N 1.31069 * 126.29758 * 359.97438 * 8 7 6 10 10 N 1.28646 * 109.42274 * 179.97438 * 9 8 7 11 11 C 1.31323 * 109.43457 * 359.97438 * 10 9 8 12 12 S 1.76199 * 126.28566 * 179.97438 * 11 10 9 13 13 C 1.80995 * 100.00152 * 0.02709 * 12 11 10 14 14 C 1.52996 * 109.47201 * 179.97438 * 13 12 11 15 15 H 1.08994 * 109.47405 * 304.99973 * 14 13 12 16 16 O 1.42899 * 109.46993 * 65.00100 * 14 13 12 17 17 C 1.50702 * 109.47159 * 184.99940 * 14 13 12 18 18 H 1.08002 * 120.00299 * 0.02562 * 17 14 13 19 19 C 1.37884 * 119.99942 * 179.72211 * 17 14 13 20 20 N 1.31514 * 119.99698 * 0.28408 * 19 17 14 21 21 Si 1.86794 * 119.99837 * 180.27476 * 19 17 14 22 22 H 1.48496 * 109.47341 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46983 * 120.00379 * 21 19 17 24 24 H 1.48503 * 109.47491 * 240.00192 * 21 19 17 25 25 O 1.34658 * 107.42524 * 0.26099 * 11 10 9 26 26 C 1.37953 * 119.92606 * 180.29756 * 2 1 3 27 27 H 1.08999 * 109.47458 * 90.00122 * 1 2 3 28 28 H 1.09002 * 109.47193 * 210.00359 * 1 2 3 29 29 H 1.09006 * 109.47095 * 330.00331 * 1 2 3 30 30 H 1.07995 * 119.85359 * 0.02562 * 3 2 1 31 31 H 1.08994 * 109.47331 * 269.97892 * 5 4 3 32 32 H 1.09005 * 109.47498 * 29.98436 * 5 4 3 33 33 H 1.09011 * 109.46769 * 149.97892 * 5 4 3 34 34 H 1.07997 * 120.07160 * 180.02562 * 6 4 3 35 35 H 1.09009 * 109.47288 * 59.99863 * 13 12 11 36 36 H 1.09003 * 109.47496 * 300.00144 * 13 12 11 37 37 H 0.96699 * 113.99712 * 60.00257 * 16 14 13 38 38 H 0.97005 * 119.99651 * 179.97438 * 20 19 17 39 39 H 1.08006 * 120.07476 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5809 1.2082 0.0005 5 6 4.3241 2.5192 0.0011 6 6 4.2815 0.0199 0.0005 7 6 3.5913 -1.1937 -0.0005 8 6 4.3350 -2.4704 0.0000 9 7 5.6383 -2.6091 0.0010 10 7 5.9353 -3.8608 0.0018 11 6 4.8313 -4.5718 0.0019 12 16 4.7236 -6.3305 0.0022 13 6 6.4835 -6.7532 0.0031 14 6 6.6426 -8.2748 0.0042 15 1 6.0938 -8.6970 0.8460 16 8 6.1263 -8.8085 -1.2168 17 6 8.1025 -8.6272 0.1288 18 1 8.8429 -7.8442 0.2006 19 6 8.4926 -9.9495 0.1575 20 7 7.5910 -10.9030 0.0705 21 14 10.3015 -10.3862 0.3198 22 1 11.1062 -9.1408 0.3999 23 1 10.5083 -11.1889 1.5520 24 1 10.7280 -11.1764 -0.8630 25 8 3.7966 -3.7100 -0.0048 26 6 2.1952 -1.1956 -0.0062 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8901 0.5138 30 1 1.6536 2.1324 0.0004 31 1 4.5040 2.8353 -1.0263 32 1 3.7287 3.2742 0.5147 33 1 5.2772 2.3963 0.5157 34 1 5.3614 0.0284 0.0014 35 1 6.9564 -6.3382 0.8933 36 1 6.9573 -6.3386 -0.8867 37 1 6.5689 -8.4759 -2.0096 38 1 7.8655 -11.8332 0.0904 39 1 1.6552 -2.1309 -0.0115 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352154022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:00 Heat of formation + Delta-G solvation = -21.958331 kcal Electronic energy + Delta-G solvation = -22710.507529 eV Core-core repulsion = 19130.984916 eV Total energy + Delta-G solvation = -3579.522612 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.24844 -40.56826 -38.00605 -37.43688 -34.60751 -34.52842 -34.32263 -31.91499 -31.22788 -28.26732 -27.80328 -27.48711 -25.90761 -25.05456 -23.13759 -22.44174 -21.61305 -19.74430 -19.26189 -18.68010 -17.93811 -17.30962 -16.79653 -16.72530 -16.35953 -16.33030 -16.13850 -15.55709 -15.03657 -14.53941 -14.42093 -14.10565 -13.98092 -13.80240 -13.60296 -13.39011 -13.34172 -13.21186 -13.01568 -12.96587 -12.82453 -12.80609 -12.69121 -12.30188 -12.09523 -12.04604 -11.77152 -11.69969 -11.22155 -10.75904 -10.39796 -9.90984 -9.68377 -8.89993 -8.19761 -6.46082 -0.76008 -0.59054 0.24714 0.33719 0.88981 1.19729 1.40983 1.43165 1.46833 1.55493 2.38329 2.60632 2.88874 3.07373 3.58910 3.66773 3.75239 3.91136 3.97658 4.01401 4.06980 4.09255 4.19545 4.23712 4.33371 4.54942 4.64041 4.81803 4.82838 4.84288 4.86665 4.92541 5.16326 5.24254 5.32329 5.43960 5.45098 5.50362 5.63125 5.85625 5.91882 6.62859 6.88512 7.25883 7.41723 8.84988 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.029847 B = 0.002268 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.906453 B =12340.512836 C =13157.989031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.089 4.089 4 C -0.082 4.082 5 C -0.114 4.114 6 C -0.087 4.087 7 C -0.039 4.039 8 C 0.207 3.793 9 N -0.292 5.292 10 N -0.313 5.313 11 C 0.134 3.866 12 S 0.089 5.911 13 C -0.118 4.118 14 C 0.248 3.752 15 H 0.043 0.957 16 O -0.572 6.572 17 C -0.581 4.581 18 H 0.064 0.936 19 C 0.031 3.969 20 N -0.894 5.894 21 Si 0.963 3.037 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.278 1.278 25 O -0.207 6.207 26 C -0.101 4.101 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.163 0.837 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.363 0.637 38 H 0.265 0.735 39 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.754 26.401 -0.515 29.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.082 4.082 3 C -0.108 4.108 4 C -0.082 4.082 5 C -0.170 4.170 6 C -0.107 4.107 7 C -0.041 4.041 8 C -0.005 4.005 9 N -0.139 5.139 10 N -0.165 5.165 11 C -0.183 4.183 12 S 0.321 5.679 13 C -0.267 4.267 14 C 0.188 3.812 15 H 0.061 0.939 16 O -0.376 6.376 17 C -0.620 4.620 18 H 0.082 0.918 19 C -0.173 4.173 20 N -0.530 5.530 21 Si 0.788 3.212 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.203 1.203 25 O -0.089 6.089 26 C -0.121 4.121 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.108 0.892 30 H 0.181 0.819 31 H 0.102 0.898 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.149 0.851 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.209 0.791 38 H 0.074 0.926 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.864 25.434 -0.098 28.967 hybrid contribution 1.435 -0.175 -0.198 1.460 sum -12.429 25.259 -0.295 28.153 Atomic orbital electron populations 1.20885 0.88260 1.04244 1.03659 1.20150 0.98007 0.91739 0.98324 1.21584 0.93225 0.98895 0.97060 1.20152 0.94412 0.95243 0.98429 1.20884 1.00226 0.92253 1.03663 1.21146 1.00675 0.90185 0.98663 1.17385 0.92881 0.85044 1.08746 1.26113 0.89004 0.85412 1.00002 1.74347 1.11494 1.10054 1.17988 1.74929 1.23704 0.97129 1.20701 1.30631 0.83100 1.01912 1.02617 1.86282 1.13285 0.78930 1.89447 1.24768 0.91520 1.03511 1.06885 1.19011 0.93931 0.83191 0.85083 0.93888 1.86535 1.62599 1.72403 1.16080 1.21839 0.92729 0.92791 1.54674 0.91759 1.25858 1.02019 0.96283 0.93125 1.70196 1.35169 1.00221 1.47416 0.85445 0.79524 0.78402 0.77832 1.18927 1.20370 1.20319 1.84998 1.36869 1.15812 1.71253 1.21275 0.91388 0.99979 0.99460 0.89819 0.91155 0.89190 0.81923 0.89815 0.89112 0.91228 0.85118 0.88650 0.88717 0.79118 0.92613 0.85107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 10.01 71.24 0.71 -0.22 16 2 C -0.08 -1.16 5.87 -19.90 -0.12 -1.27 16 3 C -0.09 -1.04 9.34 22.33 0.21 -0.83 16 4 C -0.08 -1.20 5.87 -19.90 -0.12 -1.31 16 5 C -0.11 -0.99 10.01 71.24 0.71 -0.28 16 6 C -0.09 -1.83 9.35 22.53 0.21 -1.62 16 7 C -0.04 -0.96 5.87 -20.10 -0.12 -1.08 16 8 C 0.21 6.71 7.98 87.32 0.70 7.41 16 9 N -0.29 -10.80 11.89 -166.15 -1.98 -12.78 16 10 N -0.31 -12.39 11.62 -171.86 -2.00 -14.39 16 11 C 0.13 4.94 8.53 130.32 1.11 6.06 16 12 S 0.09 3.22 22.09 -56.49 -1.25 1.97 16 13 C -0.12 -4.78 4.83 71.98 0.35 -4.44 16 14 C 0.25 12.09 2.81 29.85 0.08 12.18 16 15 H 0.04 2.32 8.14 -2.39 -0.02 2.30 16 16 O -0.57 -27.99 12.49 -148.98 -1.86 -29.85 16 17 C -0.58 -30.67 8.76 25.60 0.22 -30.45 16 18 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 19 C 0.03 1.67 5.40 84.66 0.46 2.12 16 20 N -0.89 -51.39 12.84 21.45 0.28 -51.12 16 21 Si 0.96 42.32 29.54 68.60 2.03 44.34 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 O -0.21 -7.09 10.69 -14.57 -0.16 -7.25 16 26 C -0.10 -2.03 9.38 22.53 0.21 -1.82 16 27 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 29 H 0.09 0.40 8.08 -2.38 -0.02 0.38 16 30 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 31 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 0.43 8.08 -2.38 -0.02 0.41 16 33 H 0.07 0.65 8.08 -2.38 -0.02 0.63 16 34 H 0.13 2.88 7.86 -2.91 -0.02 2.86 16 35 H 0.09 3.89 8.14 -2.39 -0.02 3.87 16 36 H 0.09 3.76 8.14 -2.39 -0.02 3.74 16 37 H 0.36 15.57 9.04 -74.06 -0.67 14.90 16 38 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 39 H 0.13 2.55 7.93 -2.91 -0.02 2.53 16 Total: -1.00 -66.87 358.49 0.11 -66.77 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: 0.41 Total: 17.86 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 4.63 Total: -15.57 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -3.70 Total: -78.28 kcal Atomic # 8 Polarization: -35.08 SS G_CDS: -2.02 Total: -37.10 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.25 Total: 1.97 kcal Total: -66.87 0.11 -66.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352154022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.811 kcal (2) G-P(sol) polarization free energy of solvation -66.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds