Wall clock time and date at job start Tue Mar 31 2020 13:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36031 * 117.00045 * 2 1 4 4 C 1.37469 * 119.77348 * 359.97438 * 3 2 1 5 5 C 1.41040 * 120.36218 * 179.97438 * 4 3 2 6 6 N 1.34732 * 129.50602 * 180.02562 * 5 4 3 7 7 C 1.27905 * 117.84635 * 180.02562 * 6 5 4 8 8 C 1.50704 * 124.23881 * 180.26538 * 7 6 5 9 9 S 1.70633 * 111.52654 * 359.97438 * 7 6 5 10 10 C 1.39898 * 118.68961 * 0.06208 * 5 4 3 11 11 C 1.39288 * 120.47604 * 359.97438 * 10 5 4 12 12 C 1.38149 * 120.13119 * 359.97438 * 11 10 5 13 13 N 1.40177 * 120.05968 * 180.02562 * 12 11 10 14 14 C 1.34777 * 119.99885 * 24.82966 * 13 12 11 15 15 O 1.21302 * 119.99720 * 5.53680 * 14 13 12 16 16 C 1.50693 * 120.00161 * 185.53166 * 14 13 12 17 17 C 1.53005 * 109.47483 * 180.02562 * 16 14 13 18 18 C 1.50693 * 109.47483 * 179.97438 * 17 16 14 19 19 H 1.07999 * 119.99991 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00111 * 179.97438 * 18 17 16 21 21 N 1.31520 * 119.99979 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00338 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46673 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47145 * 120.00029 * 22 20 18 25 25 H 1.48494 * 109.47267 * 240.00757 * 22 20 18 26 26 H 1.09001 * 109.46896 * 60.00872 * 1 2 3 27 27 H 1.09006 * 109.47210 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47739 * 299.99985 * 1 2 3 29 29 H 1.08007 * 119.81532 * 359.97398 * 4 3 2 30 30 H 1.08996 * 109.46976 * 269.70231 * 8 7 6 31 31 H 1.08999 * 109.46813 * 29.69648 * 8 7 6 32 32 H 1.09003 * 109.47109 * 149.69721 * 8 7 6 33 33 H 1.07999 * 119.93477 * 180.02562 * 11 10 5 34 34 H 0.96999 * 120.00144 * 204.83742 * 13 12 11 35 35 H 1.09005 * 109.47254 * 300.00571 * 16 14 13 36 36 H 1.08996 * 109.47183 * 60.00335 * 16 14 13 37 37 H 1.09010 * 109.46474 * 299.99836 * 17 16 14 38 38 H 1.08996 * 109.47183 * 59.99666 * 17 16 14 39 39 H 0.96996 * 119.99609 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2120 0.0000 4 6 1.2933 2.3620 -0.0005 5 6 1.9207 3.6252 0.0000 6 7 1.3709 4.8552 0.0001 7 6 2.1596 5.8621 0.0001 8 6 1.7017 7.2979 0.0060 9 16 3.7953 5.3762 0.0007 10 6 3.3186 3.6808 -0.0002 11 6 4.0722 2.5094 -0.0005 12 6 3.4425 1.2797 0.0001 13 7 4.2024 0.1018 0.0004 14 6 5.4579 0.1099 0.4903 15 8 5.8950 1.1088 1.0220 16 6 6.3187 -1.1218 0.3778 17 6 7.6858 -0.8481 1.0080 18 6 8.5464 -2.0801 0.8960 19 1 8.1571 -2.9695 0.4231 20 6 9.8307 -2.0718 1.3973 21 7 10.3046 -0.9888 1.9737 22 14 10.8973 -3.5992 1.2591 23 1 10.1355 -4.6744 0.5743 24 1 12.1177 -3.2814 0.4751 25 1 11.2864 -4.0557 2.6175 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 0.2152 2.2977 -0.0014 30 1 1.5926 7.6487 -1.0202 31 1 0.7427 7.3713 0.5189 32 1 2.4386 7.9122 0.5236 33 1 5.1509 2.5625 -0.0002 34 1 3.8247 -0.7192 -0.3521 35 1 5.8380 -1.9499 0.8988 36 1 6.4479 -1.3800 -0.6732 37 1 8.1667 -0.0200 0.4871 38 1 7.5563 -0.5902 2.0590 39 1 11.2081 -0.9831 2.3267 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360148233.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:09 Heat of formation + Delta-G solvation = -21.768633 kcal Electronic energy + Delta-G solvation = -23448.709267 eV Core-core repulsion = 19869.194880 eV Total energy + Delta-G solvation = -3579.514386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.09224 -39.54757 -39.08068 -36.38834 -34.24366 -33.54567 -31.46690 -30.81106 -30.41970 -28.58417 -27.06960 -25.61748 -23.84651 -23.16971 -21.55401 -20.98268 -19.78215 -19.00773 -17.65462 -17.14654 -17.05211 -16.39226 -16.11716 -15.62409 -15.20525 -15.10227 -14.76403 -14.47152 -14.19077 -13.82752 -13.48560 -13.39531 -13.29675 -13.07954 -12.66808 -12.50492 -12.23325 -12.11687 -11.85324 -11.32331 -11.21058 -11.05989 -10.96142 -10.61331 -10.07556 -10.01756 -9.93134 -9.82087 -9.68438 -9.23964 -9.09340 -8.36319 -8.05640 -7.77865 -5.99772 -4.04365 0.28346 1.03826 1.16463 1.67393 2.14487 2.88408 2.99738 3.21601 3.30901 3.38444 3.41534 3.59888 3.71918 4.44595 4.46312 4.68931 4.81655 4.89327 4.94136 5.05287 5.13944 5.17957 5.22533 5.35621 5.41368 5.52579 5.58695 5.62325 5.76690 6.10194 6.11189 6.11784 6.21099 6.60877 6.78544 7.06923 7.49754 7.59688 7.69954 7.78817 8.01477 8.31191 8.49724 9.03601 9.59635 11.11163 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.016804 B = 0.002866 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.888720 B = 9767.201025 C =11331.491641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.116 3.884 4 C -0.147 4.147 5 C 0.093 3.907 6 N -0.470 5.470 7 C 0.079 3.921 8 C -0.080 4.080 9 S 0.110 5.890 10 C -0.185 4.185 11 C -0.061 4.061 12 C 0.160 3.840 13 N -0.671 5.671 14 C 0.509 3.491 15 O -0.512 6.512 16 C -0.128 4.128 17 C 0.036 3.964 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.142 0.858 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.165 0.835 34 H 0.416 0.584 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.034 10.485 -6.450 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.066 3.934 4 C -0.170 4.170 5 C -0.028 4.028 6 N -0.185 5.185 7 C -0.205 4.205 8 C -0.140 4.140 9 S 0.365 5.635 10 C -0.304 4.304 11 C -0.086 4.086 12 C 0.059 3.941 13 N -0.316 5.316 14 C 0.300 3.700 15 O -0.386 6.386 16 C -0.168 4.168 17 C -0.001 4.001 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.527 5.527 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.076 0.924 29 H 0.160 0.840 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.183 0.817 34 H 0.253 0.747 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.047 11.700 -5.972 24.810 hybrid contribution -0.369 -1.912 -0.160 1.954 sum -21.416 9.788 -6.132 24.332 Atomic orbital electron populations 1.23105 0.77871 1.04220 1.01612 1.86074 1.21803 1.25633 1.88998 1.18276 0.90171 0.84805 1.00126 1.20202 0.99876 0.88242 1.08662 1.18663 0.88585 0.91335 1.04218 1.66119 1.38037 0.97430 1.16949 1.26656 0.93293 0.99694 1.00882 1.20524 1.03014 0.86397 1.04082 1.84001 1.08452 0.96740 1.74325 1.23508 0.96843 0.97998 1.12016 1.20449 1.01703 0.87262 0.99192 1.16968 0.86777 0.87572 1.02750 1.43865 1.15071 1.10444 1.62203 1.21942 0.80406 0.91938 0.75760 1.90640 1.71942 1.35093 1.40886 1.21926 0.98466 0.92929 1.03445 1.18935 0.87370 0.97212 0.96633 1.21223 0.98258 0.98512 1.38587 0.92455 1.25024 0.98010 0.96123 0.95217 1.70004 1.16638 1.27456 1.38642 0.86526 0.80469 0.83163 0.77753 1.19727 1.20997 1.20998 0.92424 0.87877 0.92399 0.84033 0.89345 0.89205 0.89760 0.81732 0.74726 0.89664 0.89555 0.95668 0.95657 0.92953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.80 101.05 0.99 1.18 16 2 O -0.31 -3.45 9.90 -19.84 -0.20 -3.65 16 3 C 0.12 1.52 6.68 -39.29 -0.26 1.26 16 4 C -0.15 -1.87 9.09 -38.80 -0.35 -2.23 16 5 C 0.09 1.34 6.99 -84.91 -0.59 0.75 16 6 N -0.47 -6.43 10.57 -9.07 -0.10 -6.53 16 7 C 0.08 0.90 7.28 -13.91 -0.10 0.80 16 8 C -0.08 -0.55 10.44 36.01 0.38 -0.17 16 9 S 0.11 1.36 23.11 -107.50 -2.48 -1.12 16 10 C -0.18 -2.79 6.55 -38.57 -0.25 -3.05 16 11 C -0.06 -0.99 8.74 -39.22 -0.34 -1.34 16 12 C 0.16 2.43 6.45 -83.50 -0.54 1.90 16 13 N -0.67 -10.00 5.29 -9.76 -0.05 -10.05 16 14 C 0.51 9.51 7.63 -10.99 -0.08 9.43 16 15 O -0.51 -11.42 13.15 5.54 0.07 -11.34 16 16 C -0.13 -2.48 5.64 -27.88 -0.16 -2.64 16 17 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 18 C -0.53 -14.66 9.11 -34.45 -0.31 -14.97 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 22 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H 0.06 0.35 7.64 -51.93 -0.40 -0.05 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.38 7.64 -51.93 -0.40 -0.02 16 29 H 0.14 1.45 6.21 -52.48 -0.33 1.12 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.17 2.99 5.77 -52.49 -0.30 2.69 16 34 H 0.42 4.97 8.34 -40.82 -0.34 4.63 16 35 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.02 0.71 8.10 -51.92 -0.42 0.29 16 38 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 346.98 15.07 5.23 5.23 Total: -1.00 -34.74 346.98 -8.34 -43.08 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.68 Total: 0.97 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -1.85 Total: -6.70 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.59 Total: -42.89 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: -0.12 Total: -14.99 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.48 Total: -1.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.74 -8.34 -43.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360148233.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.315 kcal (2) G-P(sol) polarization free energy of solvation -34.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds