Wall clock time and date at job start Tue Mar 31 2020 12:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00132 * 2 1 4 4 H 1.48495 * 109.47302 * 239.99847 * 3 2 1 5 5 H 1.48503 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47092 * 119.99888 * 3 2 1 7 7 C 1.37883 * 119.99922 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99889 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99715 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46743 * 180.02562 * 9 7 2 11 11 N 1.46502 * 109.46909 * 179.97438 * 10 9 7 12 12 S 1.65595 * 120.00160 * 165.00203 * 11 10 9 13 13 O 1.42110 * 106.39954 * 311.45640 * 12 11 10 14 14 O 1.42096 * 106.40630 * 178.53793 * 12 11 10 15 15 C 1.76194 * 107.22226 * 64.99324 * 12 11 10 16 16 C 1.38280 * 119.93900 * 269.72964 * 15 12 11 17 17 C 1.38123 * 120.06843 * 180.27253 * 16 15 12 18 18 C 1.38830 * 119.93367 * 0.02562 * 17 16 15 19 19 N 1.40189 * 120.06394 * 179.97438 * 18 17 16 20 20 C 1.36573 * 125.67025 * 179.71223 * 19 18 17 21 21 C 1.34849 * 108.20278 * 179.86959 * 20 19 18 22 22 C 1.40936 * 107.46696 * 0.39353 * 21 20 19 23 23 C 1.34851 * 107.47286 * 359.75624 * 22 21 20 24 24 C 1.38826 * 119.86785 * 359.97438 * 18 17 16 25 25 C 1.38121 * 119.93658 * 0.02562 * 24 18 17 26 26 H 0.97004 * 119.99824 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47545 * 59.99767 * 9 7 2 28 28 H 1.08998 * 109.47169 * 299.99703 * 9 7 2 29 29 H 1.09002 * 109.47498 * 59.99993 * 10 9 7 30 30 H 1.08998 * 109.46875 * 299.99674 * 10 9 7 31 31 H 0.96999 * 119.99899 * 344.99352 * 11 10 9 32 32 H 1.07996 * 119.96164 * 0.27524 * 16 15 12 33 33 H 1.07993 * 120.03280 * 180.02562 * 17 16 15 34 34 H 1.08004 * 125.89832 * 0.02562 * 20 19 18 35 35 H 1.08000 * 126.26786 * 180.15228 * 21 20 19 36 36 H 1.08005 * 126.26427 * 179.75689 * 22 21 20 37 37 H 1.07996 * 125.90762 * 180.02562 * 23 22 21 38 38 H 1.08001 * 120.03288 * 179.97438 * 24 18 17 39 39 H 1.08000 * 119.97111 * 179.97438 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 7 1.5127 -4.9308 -0.0020 12 16 2.2984 -6.3405 -0.3730 13 8 3.0287 -6.0907 -1.5662 14 8 1.3365 -7.3795 -0.2536 15 6 3.4928 -6.6204 0.8918 16 6 4.7735 -6.1170 0.7552 17 6 5.7135 -6.3397 1.7424 18 6 5.3717 -7.0701 2.8724 19 7 6.3237 -7.2982 3.8758 20 6 6.1112 -7.9931 5.0322 21 6 7.2605 -7.9986 5.7376 22 6 8.2154 -7.2742 4.9962 23 6 7.6163 -6.8572 3.8623 24 6 4.0852 -7.5743 3.0067 25 6 3.1494 -7.3484 2.0162 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8713 -3.6048 0.8890 30 1 2.8725 -3.6040 -0.8909 31 1 0.5674 -4.9451 0.2151 32 1 5.0388 -5.5492 -0.1242 33 1 6.7134 -5.9459 1.6354 34 1 5.1837 -8.4600 5.3291 35 1 7.4189 -8.4684 6.6971 36 1 9.2396 -7.0873 5.2835 37 1 8.0787 -6.2755 3.0787 38 1 3.8165 -8.1433 3.8845 39 1 2.1485 -7.7407 2.1199 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361809416.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:43:10 Heat of formation + Delta-G solvation = -20.003200 kcal Electronic energy + Delta-G solvation = -23549.138062 eV Core-core repulsion = 19969.700231 eV Total energy + Delta-G solvation = -3579.437831 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.67804 -39.97387 -38.37989 -37.02413 -36.96965 -34.72350 -34.42278 -32.49739 -30.99550 -30.14369 -29.86051 -26.41166 -24.63967 -24.30599 -22.96234 -21.38901 -21.04219 -20.53221 -19.76323 -19.02139 -18.41903 -18.13607 -17.14910 -16.51335 -16.24678 -16.09508 -16.07457 -15.61875 -15.48314 -15.11968 -14.95085 -14.50525 -14.40814 -14.04299 -13.92434 -13.38862 -13.32448 -13.25842 -13.24295 -13.15831 -13.06973 -12.96189 -12.44795 -12.38465 -12.37280 -12.00225 -11.48925 -11.33333 -11.21122 -10.60647 -10.33485 -10.28261 -9.31006 -9.28806 -8.19703 -6.30227 -0.76175 -0.50570 0.08782 1.22592 1.44330 1.46525 1.54028 1.69152 1.99799 2.01256 2.40440 2.44796 2.74477 3.15450 3.23227 3.49396 3.59998 3.94431 4.05454 4.09354 4.21389 4.22658 4.34218 4.50301 4.55866 4.63000 4.75257 4.79644 4.84353 4.87249 4.92370 4.99721 5.25692 5.27687 5.48325 5.51188 5.65355 5.82388 5.88664 6.03886 6.12886 6.23853 6.31770 6.85714 7.39071 8.92114 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011590 B = 0.003382 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.315559 B = 8278.047007 C =10004.775511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.963 3.037 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.020 3.980 10 C 0.132 3.868 11 N -1.111 6.111 12 S 2.714 3.286 13 O -0.987 6.987 14 O -0.983 6.983 15 C -0.697 4.697 16 C 0.002 3.998 17 C -0.166 4.166 18 C 0.189 3.811 19 N -0.412 5.412 20 C -0.029 4.029 21 C -0.196 4.196 22 C -0.196 4.196 23 C -0.031 4.031 24 C -0.166 4.166 25 C 0.006 3.994 26 H 0.264 0.736 27 H 0.001 0.999 28 H 0.008 0.992 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.422 0.578 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.188 0.812 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.184 0.816 38 H 0.165 0.835 39 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.457 -16.805 9.911 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.087 0.913 9 C -0.019 4.019 10 C 0.007 3.993 11 N -0.872 5.872 12 S 2.806 3.194 13 O -0.977 6.977 14 O -0.974 6.974 15 C -0.786 4.786 16 C -0.018 4.018 17 C -0.187 4.187 18 C 0.095 3.905 19 N -0.085 5.085 20 C -0.154 4.154 21 C -0.220 4.220 22 C -0.220 4.220 23 C -0.156 4.156 24 C -0.186 4.186 25 C -0.014 4.014 26 H 0.072 0.928 27 H 0.019 0.981 28 H 0.026 0.974 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.258 0.742 32 H 0.174 0.826 33 H 0.178 0.822 34 H 0.205 0.795 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.201 0.799 38 H 0.182 0.818 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 13.185 -17.183 8.956 23.437 hybrid contribution -0.003 1.162 0.615 1.315 sum 13.182 -16.021 9.571 22.848 Atomic orbital electron populations 1.70080 1.07758 1.27897 1.51353 1.25921 0.95716 1.03254 0.94684 0.85522 0.78264 0.78162 0.79250 1.19202 1.21234 1.19009 1.21557 0.93963 0.91739 1.50988 0.91276 1.19154 0.94511 0.92066 0.96183 1.21323 0.94938 0.81882 1.01184 1.55357 1.21917 1.21559 1.88370 1.00968 0.72926 0.71733 0.73736 1.93542 1.74153 1.85329 1.44651 1.93535 1.60884 1.55483 1.87451 1.30769 1.13534 1.15559 1.18773 1.21023 0.90370 0.92462 0.97959 1.21157 1.02168 1.02155 0.93192 1.18377 0.89199 0.94763 0.88181 1.41934 1.09390 1.41774 1.15359 1.22474 1.02328 1.03253 0.87320 1.21417 0.93008 1.05453 1.02120 1.21417 1.01202 1.03917 0.95457 1.22453 0.83647 1.06554 1.02927 1.21185 0.91210 1.04202 1.01994 1.21026 1.00462 0.90496 0.89406 0.92757 0.98077 0.97377 0.91298 0.91200 0.74244 0.82614 0.82192 0.79512 0.82190 0.82305 0.79850 0.81790 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 2 C 0.00 0.14 5.46 84.66 0.46 0.61 16 3 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 6 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 7 C -0.54 -29.04 9.11 25.60 0.23 -28.81 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.02 0.95 5.11 29.85 0.15 1.11 16 10 C 0.13 4.94 6.16 86.38 0.53 5.47 16 11 N -1.11 -35.03 6.00 -187.48 -1.12 -36.16 16 12 S 2.71 79.74 5.74 -56.49 -0.32 79.41 16 13 O -0.99 -34.47 16.74 -128.00 -2.14 -36.61 16 14 O -0.98 -31.46 17.28 -128.00 -2.21 -33.67 16 15 C -0.70 -17.18 5.95 22.29 0.13 -17.04 16 16 C 0.00 0.04 9.51 22.25 0.21 0.25 16 17 C -0.17 -3.33 9.45 22.38 0.21 -3.12 16 18 C 0.19 3.81 6.62 38.09 0.25 4.06 16 19 N -0.41 -7.78 2.97 -346.67 -1.03 -8.81 16 20 C -0.03 -0.48 10.74 83.18 0.89 0.42 16 21 C -0.20 -3.09 10.86 22.15 0.24 -2.85 16 22 C -0.20 -3.16 10.86 22.15 0.24 -2.92 16 23 C -0.03 -0.53 10.74 83.18 0.89 0.36 16 24 C -0.17 -3.08 9.45 22.38 0.21 -2.87 16 25 C 0.01 0.13 9.51 22.25 0.21 0.34 16 26 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 27 H 0.00 0.04 8.14 -2.39 -0.02 0.03 16 28 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.60 7.75 -2.39 -0.02 2.58 16 31 H 0.42 12.46 8.65 -96.75 -0.84 11.62 16 32 H 0.16 3.34 7.61 -2.91 -0.02 3.32 16 33 H 0.16 2.38 6.70 -2.91 -0.02 2.36 16 34 H 0.19 2.02 7.01 -2.91 -0.02 2.00 16 35 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 36 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.18 2.28 7.01 -2.91 -0.02 2.26 16 38 H 0.16 2.06 6.71 -2.91 -0.02 2.04 16 39 H 0.16 2.87 7.61 -2.91 -0.02 2.85 16 Total: -1.00 -71.43 348.05 0.60 -70.84 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.24 Total: 19.78 kcal Atomic # 6 Polarization: -49.87 SS G_CDS: 4.88 Total: -44.99 kcal Atomic # 7 Polarization: -97.41 SS G_CDS: -1.87 Total: -99.28 kcal Atomic # 8 Polarization: -65.92 SS G_CDS: -4.35 Total: -70.28 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Atomic # 16 Polarization: 79.74 SS G_CDS: -0.32 Total: 79.41 kcal Total: -71.43 0.60 -70.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361809416.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.833 kcal (2) G-P(sol) polarization free energy of solvation -71.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds