Wall clock time and date at job start Tue Mar 31 2020 12:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39629 * 120.14800 * 241.00973 * 3 2 1 5 5 C 1.37942 * 119.84472 * 179.97438 * 4 3 2 6 6 C 1.38366 * 120.15475 * 359.97438 * 5 4 3 7 7 S 1.76194 * 119.85061 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40323 * 336.45697 * 7 6 5 9 9 O 1.42104 * 106.40231 * 203.53974 * 7 6 5 10 10 N 1.65593 * 107.22011 * 89.99818 * 7 6 5 11 11 C 1.46927 * 120.63300 * 89.99854 * 10 7 6 12 12 C 1.53195 * 108.77659 * 126.40977 * 11 10 7 13 13 C 1.53042 * 109.30906 * 54.63811 * 12 11 10 14 14 C 1.53034 * 109.53942 * 298.63449 * 13 12 11 15 15 H 1.09001 * 109.49923 * 301.41438 * 14 13 12 16 16 C 1.50702 * 109.49907 * 181.32018 * 14 13 12 17 17 H 1.08005 * 119.99355 * 275.04509 * 16 14 13 18 18 C 1.37869 * 120.00450 * 95.05233 * 16 14 13 19 19 N 1.31518 * 120.00168 * 186.20657 * 18 16 14 20 20 Si 1.86800 * 119.99856 * 6.19800 * 18 16 14 21 21 H 1.48494 * 109.46969 * 84.77608 * 20 18 16 22 22 H 1.48502 * 109.46931 * 204.77390 * 20 18 16 23 23 H 1.48501 * 109.47411 * 324.77429 * 20 18 16 24 24 C 1.46933 * 120.63252 * 270.01937 * 10 7 6 25 25 C 1.38364 * 120.30157 * 0.27471 * 6 5 4 26 26 C 1.37952 * 120.15152 * 359.49012 * 25 6 5 27 27 H 1.08003 * 120.07723 * 359.95943 * 4 3 2 28 28 H 1.08003 * 119.93006 * 180.02562 * 5 4 3 29 29 H 1.08997 * 109.58395 * 6.62803 * 11 10 7 30 30 H 1.08997 * 109.59056 * 246.19967 * 11 10 7 31 31 H 1.08999 * 109.49950 * 294.69089 * 12 11 10 32 32 H 1.09001 * 109.49902 * 174.58819 * 12 11 10 33 33 H 1.09005 * 109.46175 * 178.60904 * 13 12 11 34 34 H 1.09005 * 109.45146 * 58.65010 * 13 12 11 35 35 H 0.97003 * 120.00297 * 179.97438 * 19 18 16 36 36 H 1.09001 * 109.58334 * 113.79990 * 24 10 7 37 37 H 1.08999 * 109.58440 * 353.37574 * 24 10 7 38 38 H 1.08001 * 119.92668 * 179.72459 * 25 6 5 39 39 H 1.07995 * 120.07687 * 180.25465 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 0.5861 1.0561 5 6 4.6485 0.5828 1.0500 6 6 5.3374 0.0005 0.0008 7 16 7.0994 0.0001 0.0015 8 8 7.5006 1.0823 0.8304 9 8 7.5012 -0.1301 -1.3553 10 7 7.5890 -1.3832 0.7689 11 6 7.8106 -2.6218 0.0104 12 6 9.2190 -3.1416 0.3155 13 6 9.3856 -3.2933 1.8292 14 6 9.2180 -1.9289 2.5019 15 1 9.9565 -1.2335 2.1031 16 6 9.4142 -2.0738 3.9890 17 1 8.5865 -2.3697 4.6165 18 6 10.6502 -1.8285 4.5485 19 7 10.8544 -2.0717 5.8247 20 14 12.0349 -1.1508 3.4937 21 1 11.9257 0.3285 3.4241 22 1 13.3415 -1.5230 4.0933 23 1 11.9385 -1.7191 2.1251 24 6 7.8097 -1.3954 2.2215 25 6 4.6491 -0.5769 -1.0514 26 6 3.2696 -0.5849 -1.0558 27 1 2.7325 1.0408 1.8758 28 1 5.1921 1.0349 1.8664 29 1 7.7196 -2.4181 -1.0565 30 1 7.0736 -3.3683 0.3062 31 1 9.9576 -2.4347 -0.0627 32 1 9.3617 -4.1095 -0.1650 33 1 10.3785 -3.6864 2.0478 34 1 8.6308 -3.9812 2.2103 35 1 11.7241 -1.8995 6.2183 36 1 7.0725 -2.0419 2.6976 37 1 7.7179 -0.3825 2.6136 38 1 5.1930 -1.0258 -1.8694 39 1 2.7336 -1.0396 -1.8757 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397633531.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:22 Heat of formation + Delta-G solvation = -40.763368 kcal Electronic energy + Delta-G solvation = -24544.063993 eV Core-core repulsion = 20963.725933 eV Total energy + Delta-G solvation = -3580.338060 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.50427 -39.35432 -38.40037 -37.67644 -36.94399 -35.05736 -33.13754 -32.77014 -32.27199 -32.08281 -27.05013 -25.67881 -25.18627 -23.98837 -23.12531 -21.06529 -20.20872 -20.08526 -19.20331 -18.51012 -18.31865 -17.21500 -16.45389 -16.28579 -15.80817 -15.44485 -15.33790 -15.26116 -15.21546 -14.66883 -14.61769 -14.46100 -14.44380 -14.20415 -14.06224 -13.68993 -13.62893 -13.33361 -13.19290 -12.93883 -12.88383 -12.82067 -12.36736 -12.31778 -11.98165 -11.83786 -11.74463 -11.38617 -11.25306 -10.87587 -10.60564 -10.49806 -10.17564 -9.79499 -8.25263 -6.26252 -0.90120 -0.58623 0.19439 1.36031 1.39735 1.44082 1.47250 1.52591 2.01645 2.37923 2.56654 2.62047 2.78036 3.11658 3.19815 3.74164 3.78259 3.87412 4.15599 4.22551 4.24969 4.36095 4.46818 4.48192 4.60599 4.78290 4.80322 4.85790 4.86959 4.94594 5.00871 5.08450 5.10003 5.19398 5.27388 5.38928 5.58818 5.63164 5.67162 5.77076 5.87328 6.24372 6.36383 6.81671 7.39553 8.91008 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.019694 B = 0.003750 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.390706 B = 7464.850574 C = 7864.546290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.275 3.725 3 C 0.021 3.979 4 C -0.085 4.085 5 C -0.031 4.031 6 C -0.651 4.651 7 S 2.690 3.310 8 O -0.986 6.986 9 O -0.972 6.972 10 N -0.995 5.995 11 C 0.116 3.884 12 C -0.134 4.134 13 C -0.107 4.107 14 C -0.002 4.002 15 H 0.022 0.978 16 C -0.506 4.506 17 H 0.046 0.954 18 C 0.019 3.981 19 N -0.946 5.946 20 Si 0.923 3.077 21 H -0.274 1.274 22 H -0.289 1.289 23 H -0.245 1.245 24 C 0.138 3.862 25 C -0.023 4.023 26 C -0.080 4.080 27 H 0.163 0.837 28 H 0.153 0.847 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.035 0.965 34 H 0.062 0.938 35 H 0.264 0.736 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.170 0.830 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.309 0.804 -16.663 21.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.040 4.040 3 C 0.017 3.983 4 C -0.106 4.106 5 C -0.051 4.051 6 C -0.740 4.740 7 S 2.784 3.216 8 O -0.976 6.976 9 O -0.962 6.962 10 N -0.835 5.835 11 C -0.008 4.008 12 C -0.173 4.173 13 C -0.145 4.145 14 C -0.023 4.023 15 H 0.040 0.960 16 C -0.545 4.545 17 H 0.065 0.935 18 C -0.179 4.179 19 N -0.587 5.587 20 Si 0.748 3.252 21 H -0.200 1.200 22 H -0.216 1.216 23 H -0.169 1.169 24 C 0.013 3.987 25 C -0.042 4.042 26 C -0.101 4.101 27 H 0.181 0.819 28 H 0.171 0.829 29 H 0.126 0.874 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.188 0.812 39 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -14.414 1.452 -16.896 22.257 hybrid contribution 0.813 0.222 0.665 1.074 sum -13.601 1.674 -16.232 21.243 Atomic orbital electron populations 1.81321 1.13092 1.08897 1.08504 1.25696 0.92500 0.92969 0.92848 1.16340 0.83649 1.00893 0.97410 1.21509 0.93660 0.97573 0.97882 1.21078 0.94734 0.93186 0.96060 1.31090 1.26431 1.12296 1.04206 1.01741 0.74654 0.72551 0.72607 1.93559 1.81909 1.52839 1.69342 1.93530 1.81820 1.86255 1.34621 1.57618 1.81591 1.26965 1.17282 1.21715 0.97524 0.85295 0.96254 1.21969 0.97035 1.02006 0.96261 1.21643 1.00421 0.98090 0.94382 1.19478 0.94217 0.94690 0.93892 0.95972 1.21208 0.96193 1.44870 0.92220 0.93545 1.25754 1.00919 0.95542 0.95667 1.70031 1.24443 1.50471 1.13730 0.86094 0.78905 0.79486 0.80670 1.19975 1.21581 1.16864 1.21507 0.98042 1.02026 0.77125 1.21166 0.94532 0.92848 0.95645 1.21591 0.93773 0.97151 0.97623 0.81913 0.82943 0.87399 0.88758 0.93324 0.88544 0.94643 0.91949 0.92708 0.90461 0.90368 0.81233 0.81006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.45 18.54 19.01 0.35 -9.10 16 2 C 0.28 4.45 15.33 88.33 1.35 5.80 16 3 C 0.02 0.27 5.73 -21.36 -0.12 0.15 16 4 C -0.09 -1.16 9.76 22.54 0.22 -0.94 16 5 C -0.03 -0.55 9.50 22.23 0.21 -0.34 16 6 C -0.65 -12.30 5.98 22.33 0.13 -12.16 16 7 S 2.69 71.15 5.72 -56.49 -0.32 70.83 16 8 O -0.99 -33.51 15.86 -128.00 -2.03 -35.54 16 9 O -0.97 -27.27 15.85 -128.00 -2.03 -29.30 16 10 N -1.00 -27.21 3.29 -513.06 -1.69 -28.90 16 11 C 0.12 2.55 6.48 86.36 0.56 3.11 16 12 C -0.13 -3.59 6.08 30.67 0.19 -3.41 16 13 C -0.11 -3.86 5.15 30.62 0.16 -3.70 16 14 C 0.00 -0.09 1.93 -11.47 -0.02 -0.11 16 15 H 0.02 1.00 5.25 -2.39 -0.01 0.99 16 16 C -0.51 -26.82 8.86 25.60 0.23 -26.59 16 17 H 0.05 2.67 8.06 -2.91 -0.02 2.64 16 18 C 0.02 1.05 5.47 84.65 0.46 1.51 16 19 N -0.95 -57.44 13.96 21.45 0.30 -57.14 16 20 Si 0.92 43.86 27.03 68.60 1.85 45.71 16 21 H -0.27 -12.96 7.11 99.48 0.71 -12.25 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.25 -10.78 6.77 99.48 0.67 -10.11 16 24 C 0.14 4.73 5.74 86.36 0.50 5.22 16 25 C -0.02 -0.31 9.50 22.23 0.21 -0.10 16 26 C -0.08 -0.85 9.76 22.54 0.22 -0.63 16 27 H 0.16 1.51 8.06 -2.91 -0.02 1.49 16 28 H 0.15 2.68 7.60 -2.91 -0.02 2.65 16 29 H 0.11 1.90 6.92 -2.39 -0.02 1.88 16 30 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 35 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.08 2.81 6.92 -2.39 -0.02 2.79 16 38 H 0.17 1.64 7.60 -2.91 -0.02 1.62 16 39 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -72.56 342.11 1.77 -70.79 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.04 Total: 4.83 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 4.29 Total: -32.18 kcal Atomic # 7 Polarization: -94.10 SS G_CDS: -1.04 Total: -95.14 kcal Atomic # 8 Polarization: -60.78 SS G_CDS: -4.06 Total: -64.84 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 1.85 Total: 45.71 kcal Atomic # 16 Polarization: 71.15 SS G_CDS: -0.32 Total: 70.83 kcal Total: -72.56 1.77 -70.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397633531.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.023 kcal (2) G-P(sol) polarization free energy of solvation -72.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds