Wall clock time and date at job start Tue Mar 31 2020 12:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46973 * 270.00036 * 3 2 1 5 5 H 1.48502 * 109.47243 * 29.99836 * 3 2 1 6 6 H 1.48499 * 109.47023 * 150.00001 * 3 2 1 7 7 C 1.38807 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99990 * 159.38162 * 7 2 1 9 9 N 1.36939 * 119.99944 * 339.38569 * 7 2 1 10 10 C 1.46500 * 120.00048 * 321.43683 * 9 7 2 11 11 C 1.50699 * 109.47185 * 270.00156 * 10 9 7 12 12 C 1.33634 * 126.03970 * 89.99895 * 11 10 9 13 13 N 1.31781 * 114.50536 * 180.02562 * 12 11 10 14 14 C 1.29029 * 117.11825 * 359.97438 * 13 12 11 15 15 C 1.50701 * 124.91350 * 180.02562 * 14 13 12 16 16 F 1.39903 * 109.47047 * 4.97527 * 15 14 13 17 17 F 1.39892 * 109.47131 * 124.97660 * 15 14 13 18 18 F 1.39897 * 109.47257 * 244.97694 * 15 14 13 19 19 S 1.70974 * 110.17134 * 359.73005 * 14 13 12 20 20 C 1.46506 * 119.99926 * 141.43628 * 9 7 2 21 21 C 1.55240 * 110.57921 * 60.10144 * 20 9 7 22 22 C 1.54889 * 102.58618 * 203.33509 * 21 20 9 23 23 C 1.54262 * 104.31242 * 37.93725 * 22 21 20 24 24 C 1.53880 * 106.60017 * 336.31992 * 23 22 21 25 25 H 0.97003 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46751 * 30.00055 * 10 9 7 27 27 H 1.08997 * 109.47032 * 149.99776 * 10 9 7 28 28 H 1.08007 * 122.74957 * 359.97438 * 12 11 10 29 29 H 1.08997 * 110.43052 * 182.68549 * 20 9 7 30 30 H 1.09005 * 110.89389 * 85.04972 * 21 20 9 31 31 H 1.09001 * 110.76780 * 321.57078 * 21 20 9 32 32 H 1.08993 * 110.48883 * 279.18932 * 22 21 20 33 33 H 1.08999 * 110.48426 * 156.67834 * 22 21 20 34 34 H 1.09000 * 110.03825 * 95.60445 * 23 22 21 35 35 H 1.09005 * 110.03270 * 216.99080 * 23 22 21 36 36 H 1.08994 * 110.03288 * 119.28814 * 24 23 22 37 37 H 1.09000 * 110.03149 * 240.67132 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0384 -1.2322 -0.3288 9 7 1.3913 -2.3499 0.4186 10 6 0.4698 -2.3123 1.5568 11 6 1.2350 -2.5604 2.8311 12 6 1.8057 -1.6280 3.5997 13 7 2.4200 -2.0996 4.6660 14 6 2.3987 -3.3780 4.8398 15 6 3.0417 -4.1023 5.9944 16 9 3.5615 -3.1698 6.8986 17 9 2.0852 -4.8939 6.6390 18 9 4.0753 -4.9155 5.5174 19 16 1.5286 -4.1305 3.5750 20 6 1.6508 -3.6154 -0.2724 21 6 3.1583 -3.9784 -0.1985 22 6 3.3394 -4.9178 -1.4166 23 6 2.4421 -4.3019 -2.5099 24 6 1.3683 -3.4738 -1.7824 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0085 -1.3340 1.6048 27 1 -0.2910 -3.0831 1.4339 28 1 1.7674 -0.5743 3.3658 29 1 1.0450 -4.4139 0.1558 30 1 3.3872 -4.5014 0.7300 31 1 3.7762 -3.0865 -0.3032 32 1 3.0063 -5.9266 -1.1732 33 1 4.3806 -4.9282 -1.7389 34 1 3.0340 -3.6573 -3.1596 35 1 1.9719 -5.0918 -3.0958 36 1 1.4393 -2.4274 -2.0791 37 1 0.3765 -3.8613 -2.0154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447733582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:04 Heat of formation + Delta-G solvation = -93.742296 kcal Electronic energy + Delta-G solvation = -25248.858838 eV Core-core repulsion = 21124.366699 eV Total energy + Delta-G solvation = -4124.492139 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.09190 -47.64699 -47.55719 -39.35412 -37.85079 -34.85858 -31.88762 -30.72735 -28.28233 -27.98955 -26.56539 -25.24824 -23.55744 -22.25188 -20.07085 -19.97445 -19.31836 -18.90829 -18.50660 -17.51056 -16.69058 -16.46886 -15.55371 -15.00093 -14.64389 -14.46348 -14.43448 -14.26050 -14.03182 -14.00963 -13.74211 -13.72945 -13.41357 -13.10748 -12.87660 -12.67048 -12.47661 -11.75602 -11.39783 -11.20732 -11.15289 -10.86902 -10.68119 -10.55466 -10.43420 -10.27823 -10.19637 -9.89791 -9.67833 -9.53044 -8.94077 -8.75653 -8.62367 -6.88925 -6.12718 -3.65447 0.77929 1.42515 2.00112 2.61338 3.07652 3.20869 3.30056 3.34254 3.61363 4.24647 4.27492 4.40208 5.00844 5.09484 5.16974 5.29400 5.31156 5.57270 5.69372 5.88411 5.99830 6.09787 6.15405 6.25686 6.34325 6.43379 6.47521 6.51774 6.57247 6.68371 6.91056 6.96437 7.11880 7.23543 7.59571 7.87031 8.22059 8.84777 9.45753 10.03044 10.87826 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.005118 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.967159 B = 5469.334468 C = 6786.071972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.019 3.981 3 Si 0.894 3.106 4 H -0.282 1.282 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.557 5.557 10 C 0.201 3.799 11 C -0.143 4.143 12 C 0.011 3.989 13 N -0.407 5.407 14 C -0.125 4.125 15 C 0.557 3.443 16 F -0.161 7.161 17 F -0.171 7.171 18 F -0.171 7.171 19 S 0.157 5.843 20 C 0.169 3.831 21 C -0.137 4.137 22 C -0.122 4.122 23 C -0.120 4.120 24 C -0.129 4.129 25 H 0.261 0.739 26 H 0.124 0.876 27 H 0.048 0.952 28 H 0.182 0.818 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.876 -8.840 4.326 10.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.183 4.183 3 Si 0.723 3.277 4 H -0.209 1.209 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.382 4.382 8 H 0.084 0.916 9 N -0.273 5.273 10 C 0.071 3.929 11 C -0.269 4.269 12 C -0.141 4.141 13 N -0.123 5.123 14 C -0.400 4.400 15 C 0.499 3.501 16 F -0.143 7.143 17 F -0.153 7.153 18 F -0.152 7.152 19 S 0.408 5.592 20 C 0.063 3.937 21 C -0.177 4.177 22 C -0.160 4.160 23 C -0.158 4.158 24 C -0.168 4.168 25 H 0.071 0.929 26 H 0.141 0.859 27 H 0.067 0.933 28 H 0.199 0.801 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.777 -9.421 4.509 10.595 hybrid contribution 0.747 1.731 0.050 1.886 sum 2.524 -7.690 4.559 9.289 Atomic orbital electron populations 1.69942 1.05640 1.26603 1.49309 1.25243 0.95035 0.99002 0.99036 0.86429 0.79851 0.83197 0.78261 1.20885 1.21106 1.19921 1.18967 0.94397 0.85095 1.39777 0.91627 1.43924 1.52196 1.04268 1.26903 1.19864 0.89826 1.04189 0.79020 1.28478 1.04780 0.92084 1.01570 1.21604 1.00163 1.01993 0.90297 1.65905 1.15347 1.10382 1.20620 1.26098 1.14538 0.95522 1.03837 1.16983 0.75950 0.76494 0.80649 1.93218 1.87042 1.65337 1.68668 1.93216 1.64110 1.75179 1.82777 1.93227 1.59776 1.73941 1.88255 1.83759 1.47336 1.12264 1.15798 1.21417 0.93132 0.87614 0.91586 1.22966 0.99704 0.98824 0.96171 1.22272 0.98808 0.98496 0.96461 1.22072 0.97607 0.98629 0.97526 1.22459 0.96474 1.01666 0.96212 0.92881 0.85904 0.93337 0.80082 0.92893 0.93065 0.90906 0.92564 0.92786 0.92607 0.93151 0.89562 0.93455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.80 11.49 55.49 0.64 -21.17 16 2 C 0.02 0.46 4.96 -17.43 -0.09 0.37 16 3 Si 0.89 19.54 29.60 -169.99 -5.03 14.51 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.25 -5.92 7.73 -15.06 -0.12 -6.03 16 8 H 0.07 1.59 6.73 -52.49 -0.35 1.24 16 9 N -0.56 -11.76 2.44 -164.92 -0.40 -12.16 16 10 C 0.20 4.02 5.81 -5.19 -0.03 3.99 16 11 C -0.14 -2.65 6.18 -35.92 -0.22 -2.87 16 12 C 0.01 0.22 11.25 -19.19 -0.22 0.00 16 13 N -0.41 -7.78 10.25 -11.86 -0.12 -7.90 16 14 C -0.12 -2.16 6.71 -13.45 -0.09 -2.25 16 15 C 0.56 8.63 3.52 36.01 0.13 8.76 16 16 F -0.16 -2.58 17.09 2.25 0.04 -2.54 16 17 F -0.17 -2.45 17.30 2.25 0.04 -2.41 16 18 F -0.17 -2.55 17.30 2.25 0.04 -2.51 16 19 S 0.16 2.53 23.18 -107.50 -2.49 0.03 16 20 C 0.17 3.14 3.39 -66.08 -0.22 2.92 16 21 C -0.14 -2.37 6.47 -24.55 -0.16 -2.53 16 22 C -0.12 -1.78 6.82 -25.07 -0.17 -1.95 16 23 C -0.12 -1.82 6.80 -25.61 -0.17 -1.99 16 24 C -0.13 -2.33 6.41 -25.61 -0.16 -2.49 16 25 H 0.26 6.36 8.31 -40.82 -0.34 6.02 16 26 H 0.12 2.77 5.56 -51.93 -0.29 2.48 16 27 H 0.05 0.91 7.92 -51.93 -0.41 0.50 16 28 H 0.18 3.48 8.06 -52.48 -0.42 3.06 16 29 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.07 1.40 6.63 -51.93 -0.34 1.06 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.83 6.92 -51.93 -0.36 1.47 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 332.88 15.07 5.02 5.02 Total: -1.00 -24.08 332.88 -8.06 -32.14 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.26 Total: 1.07 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.53 Total: -4.08 kcal Atomic # 7 Polarization: -41.34 SS G_CDS: 0.11 Total: -41.23 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.12 Total: -7.47 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.03 Total: 14.51 kcal Atomic # 16 Polarization: 2.53 SS G_CDS: -2.49 Total: 0.03 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -24.08 -8.06 -32.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447733582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.598 kcal (2) G-P(sol) polarization free energy of solvation -24.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds