Wall clock time and date at job start Tue Mar 31 2020 12:59:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99894 * 2 1 4 4 H 1.48504 * 109.46973 * 270.00036 * 3 2 1 5 5 H 1.48502 * 109.47243 * 29.99836 * 3 2 1 6 6 H 1.48499 * 109.47023 * 150.00001 * 3 2 1 7 7 C 1.38807 * 120.00153 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99990 * 159.38162 * 7 2 1 9 9 N 1.36939 * 119.99944 * 339.38569 * 7 2 1 10 10 C 1.46500 * 120.00048 * 321.43683 * 9 7 2 11 11 C 1.50699 * 109.47185 * 270.00156 * 10 9 7 12 12 C 1.33634 * 126.03970 * 89.99895 * 11 10 9 13 13 N 1.31781 * 114.50536 * 180.02562 * 12 11 10 14 14 C 1.29029 * 117.11825 * 359.97438 * 13 12 11 15 15 C 1.50701 * 124.91350 * 180.02562 * 14 13 12 16 16 F 1.39903 * 109.47047 * 4.97527 * 15 14 13 17 17 F 1.39892 * 109.47131 * 124.97660 * 15 14 13 18 18 F 1.39897 * 109.47257 * 244.97694 * 15 14 13 19 19 S 1.70974 * 110.17134 * 359.73005 * 14 13 12 20 20 C 1.46506 * 119.99926 * 141.43628 * 9 7 2 21 21 C 1.55240 * 110.57921 * 60.10144 * 20 9 7 22 22 C 1.54889 * 102.58618 * 203.33509 * 21 20 9 23 23 C 1.54262 * 104.31242 * 37.93725 * 22 21 20 24 24 C 1.53880 * 106.60017 * 336.31992 * 23 22 21 25 25 H 0.97003 * 120.00150 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.46751 * 30.00055 * 10 9 7 27 27 H 1.08997 * 109.47032 * 149.99776 * 10 9 7 28 28 H 1.08007 * 122.74957 * 359.97438 * 12 11 10 29 29 H 1.08997 * 110.43052 * 182.68549 * 20 9 7 30 30 H 1.09005 * 110.89389 * 85.04972 * 21 20 9 31 31 H 1.09001 * 110.76780 * 321.57078 * 21 20 9 32 32 H 1.08993 * 110.48883 * 279.18932 * 22 21 20 33 33 H 1.08999 * 110.48426 * 156.67834 * 22 21 20 34 34 H 1.09000 * 110.03825 * 95.60445 * 23 22 21 35 35 H 1.09005 * 110.03270 * 216.99080 * 23 22 21 36 36 H 1.08994 * 110.03288 * 119.28814 * 24 23 22 37 37 H 1.09000 * 110.03149 * 240.67132 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6528 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0384 -1.2322 -0.3288 9 7 1.3913 -2.3499 0.4186 10 6 0.4698 -2.3123 1.5568 11 6 1.2350 -2.5604 2.8311 12 6 1.8057 -1.6280 3.5997 13 7 2.4200 -2.0996 4.6660 14 6 2.3987 -3.3780 4.8398 15 6 3.0417 -4.1023 5.9944 16 9 3.5615 -3.1698 6.8986 17 9 2.0852 -4.8939 6.6390 18 9 4.0753 -4.9155 5.5174 19 16 1.5286 -4.1305 3.5750 20 6 1.6508 -3.6154 -0.2724 21 6 3.1583 -3.9784 -0.1985 22 6 3.3394 -4.9178 -1.4166 23 6 2.4421 -4.3019 -2.5099 24 6 1.3683 -3.4738 -1.7824 25 1 -0.4850 0.8401 -0.0004 26 1 -0.0085 -1.3340 1.6048 27 1 -0.2910 -3.0831 1.4339 28 1 1.7674 -0.5743 3.3658 29 1 1.0450 -4.4139 0.1558 30 1 3.3872 -4.5014 0.7300 31 1 3.7762 -3.0865 -0.3032 32 1 3.0063 -5.9266 -1.1732 33 1 4.3806 -4.9282 -1.7389 34 1 3.0340 -3.6573 -3.1596 35 1 1.9719 -5.0918 -3.0958 36 1 1.4393 -2.4274 -2.0791 37 1 0.3765 -3.8613 -2.0154 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447733582.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:04 Heat of formation + Delta-G solvation = -103.700186 kcal Electronic energy + Delta-G solvation = -25249.290645 eV Core-core repulsion = 21124.366699 eV Total energy + Delta-G solvation = -4124.923945 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.32861 -48.85773 -48.80901 -40.84324 -39.28623 -36.38376 -33.57046 -32.23729 -29.69648 -29.33853 -28.08889 -26.80684 -24.99416 -23.81148 -21.48156 -21.32038 -20.76194 -20.23139 -19.73808 -18.90332 -18.11332 -18.10150 -17.05465 -16.56663 -16.00142 -15.89423 -15.85772 -15.60160 -15.45329 -15.24939 -14.97291 -14.95945 -14.91511 -14.62593 -14.30661 -14.04705 -13.83602 -13.32247 -13.08690 -12.83737 -12.72394 -12.44471 -12.23076 -11.92445 -11.85807 -11.76446 -11.75194 -11.26060 -11.10292 -10.97831 -10.53199 -10.35358 -10.09513 -8.59802 -7.91083 -5.48290 -0.64213 0.01621 0.53962 1.29949 1.42053 1.49443 1.55291 1.59072 2.30989 2.47221 2.99961 3.14760 3.20683 3.57810 3.71618 3.97831 4.01179 4.15702 4.30030 4.36937 4.63208 4.77214 4.89629 4.90803 4.93983 4.99874 5.05093 5.19369 5.25260 5.34080 5.46769 5.53473 5.64146 5.67246 5.79218 6.40291 6.46582 7.10948 7.76537 8.29262 9.06597 Molecular weight = 320.09amu Principal moments of inertia in cm(-1) A = 0.012800 B = 0.005118 C = 0.004125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.967159 B = 5469.334468 C = 6786.071972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.016 4.016 3 Si 0.937 3.063 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.248 4.248 8 H 0.052 0.948 9 N -0.570 5.570 10 C 0.207 3.793 11 C -0.160 4.160 12 C 0.007 3.993 13 N -0.430 5.430 14 C -0.129 4.129 15 C 0.564 3.436 16 F -0.164 7.164 17 F -0.160 7.160 18 F -0.164 7.164 19 S 0.238 5.762 20 C 0.162 3.838 21 C -0.133 4.133 22 C -0.113 4.113 23 C -0.115 4.115 24 C -0.127 4.127 25 H 0.256 0.744 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.172 0.828 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 -11.438 4.918 12.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.215 4.215 3 Si 0.766 3.234 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.378 4.378 8 H 0.070 0.930 9 N -0.288 5.288 10 C 0.078 3.922 11 C -0.286 4.286 12 C -0.145 4.145 13 N -0.146 5.146 14 C -0.404 4.404 15 C 0.506 3.494 16 F -0.145 7.145 17 F -0.142 7.142 18 F -0.145 7.145 19 S 0.490 5.510 20 C 0.056 3.944 21 C -0.172 4.172 22 C -0.151 4.151 23 C -0.153 4.153 24 C -0.166 4.166 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.078 0.922 28 H 0.189 0.811 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.396 -12.038 5.106 13.294 hybrid contribution 0.556 2.382 0.008 2.446 sum 2.952 -9.656 5.114 11.318 Atomic orbital electron populations 1.70018 1.06259 1.26371 1.51809 1.25601 0.95427 1.00566 0.99882 0.85767 0.78677 0.81326 0.77618 1.21294 1.21512 1.20424 1.18893 0.93706 0.86070 1.39171 0.93039 1.43996 1.52018 1.04493 1.28246 1.19591 0.89843 1.03248 0.79561 1.28210 1.04411 0.94157 1.01853 1.21558 1.00269 1.02006 0.90662 1.65939 1.16438 1.11396 1.20850 1.26615 1.13562 0.95541 1.04680 1.16768 0.76096 0.76460 0.80111 1.93221 1.87070 1.65585 1.68631 1.93244 1.63731 1.74746 1.82456 1.93246 1.59474 1.73616 1.88189 1.83433 1.45204 1.08893 1.13495 1.21618 0.94295 0.86901 0.91623 1.22866 0.98040 0.98452 0.97858 1.22249 0.99578 0.98684 0.94596 1.22032 0.96802 0.98782 0.97641 1.22382 0.97875 0.99859 0.96517 0.93469 0.88591 0.92151 0.81086 0.91510 0.92549 0.93597 0.90339 0.91464 0.92947 0.90751 0.93476 0.93181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.60 11.49 21.65 0.25 -46.35 16 2 C -0.02 -0.77 4.96 84.86 0.42 -0.35 16 3 Si 0.94 41.54 29.60 68.60 2.03 43.57 16 4 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 5 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.25 -11.95 7.73 84.03 0.65 -11.30 16 8 H 0.05 2.60 6.73 -2.91 -0.02 2.58 16 9 N -0.57 -24.26 2.44 -675.70 -1.65 -25.91 16 10 C 0.21 8.31 5.81 85.63 0.50 8.81 16 11 C -0.16 -5.82 6.18 24.64 0.15 -5.66 16 12 C 0.01 0.27 11.25 83.66 0.94 1.21 16 13 N -0.43 -15.95 10.25 -191.44 -1.96 -17.91 16 14 C -0.13 -4.15 6.71 88.52 0.59 -3.56 16 15 C 0.56 15.93 3.52 71.24 0.25 16.18 16 16 F -0.16 -4.90 17.09 44.97 0.77 -4.13 16 17 F -0.16 -4.08 17.30 44.97 0.78 -3.30 16 18 F -0.16 -4.40 17.30 44.97 0.78 -3.62 16 19 S 0.24 6.97 23.18 -56.49 -1.31 5.66 16 20 C 0.16 5.83 3.39 46.19 0.16 5.99 16 21 C -0.13 -4.37 6.47 32.01 0.21 -4.16 16 22 C -0.11 -2.95 6.82 31.67 0.22 -2.74 16 23 C -0.11 -3.21 6.80 31.32 0.21 -3.00 16 24 C -0.13 -4.52 6.41 31.32 0.20 -4.32 16 25 H 0.26 12.96 8.31 -92.71 -0.77 12.19 16 26 H 0.10 4.45 5.56 -2.39 -0.01 4.44 16 27 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 28 H 0.17 6.79 8.06 -2.91 -0.02 6.77 16 29 H 0.07 2.20 7.84 -2.39 -0.02 2.19 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.75 16 31 H 0.05 1.75 6.63 -2.39 -0.02 1.74 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 34 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.05 2.04 6.92 -2.39 -0.02 2.03 16 37 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -51.99 332.88 5.29 -46.70 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: 1.11 Total: 8.20 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 4.50 Total: -2.91 kcal Atomic # 7 Polarization: -86.81 SS G_CDS: -3.36 Total: -90.18 kcal Atomic # 9 Polarization: -13.37 SS G_CDS: 2.32 Total: -11.05 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 16 Polarization: 6.97 SS G_CDS: -1.31 Total: 5.66 kcal Total: -51.99 5.29 -46.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447733582.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.996 kcal (2) G-P(sol) polarization free energy of solvation -51.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds