Wall clock time and date at job start Tue Mar 31 2020 13:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99681 * 2 1 4 4 C 1.53011 * 109.46540 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47234 * 65.00011 * 4 3 2 6 6 C 1.36848 * 120.00077 * 93.63872 * 5 4 3 7 7 H 1.08001 * 120.00010 * 224.95268 * 6 5 4 8 8 C 1.39041 * 119.99954 * 44.68248 * 6 5 4 9 9 N 1.31362 * 120.00010 * 6.47297 * 8 6 5 10 10 Si 1.86803 * 119.99789 * 186.47515 * 8 6 5 11 11 H 1.48505 * 109.47317 * 60.00300 * 10 8 6 12 12 H 1.48504 * 109.46965 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.47303 * 300.00125 * 10 8 6 14 14 C 1.34780 * 119.99770 * 273.63769 * 5 4 3 15 15 O 1.21660 * 119.99952 * 355.32272 * 14 5 4 16 16 C 1.47248 * 119.99773 * 175.32011 * 14 5 4 17 17 N 1.29752 * 121.84152 * 5.59153 * 16 14 5 18 18 S 1.55998 * 111.73812 * 179.97438 * 17 16 14 19 19 C 1.76257 * 97.57291 * 359.97438 * 18 17 16 20 20 C 1.38693 * 134.17522 * 180.02562 * 19 18 17 21 21 C 1.36815 * 119.62906 * 179.97438 * 20 19 18 22 22 C 1.38896 * 120.30473 * 0.02562 * 21 20 19 23 23 C 1.50696 * 119.48388 * 179.97438 * 22 21 20 24 24 C 1.36355 * 121.02943 * 0.02562 * 22 21 20 25 25 C 1.40393 * 119.96395 * 359.69248 * 24 22 21 26 26 H 1.09000 * 109.47159 * 59.99992 * 1 2 3 27 27 H 1.08997 * 109.47083 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46978 * 300.00487 * 1 2 3 29 29 H 1.08999 * 109.47375 * 60.00526 * 3 2 1 30 30 H 1.08997 * 109.47271 * 299.99624 * 3 2 1 31 31 H 1.08997 * 109.46611 * 304.99489 * 4 3 2 32 32 H 1.09002 * 109.46570 * 184.99998 * 4 3 2 33 33 H 0.97002 * 119.99998 * 179.97438 * 9 8 6 34 34 H 1.07997 * 120.18617 * 359.97438 * 20 19 18 35 35 H 1.07996 * 119.85009 * 179.97438 * 21 20 19 36 36 H 1.09003 * 109.47165 * 90.00316 * 23 22 21 37 37 H 1.09009 * 109.47290 * 209.99597 * 23 22 21 38 38 H 1.08993 * 109.47586 * 330.00079 * 23 22 21 39 39 H 1.07997 * 120.01237 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.3374 1.3483 -2.3145 7 1 3.9845 1.1095 -3.3069 8 6 5.1545 2.4554 -2.1148 9 7 5.6828 2.6771 -0.9328 10 14 5.5010 3.6274 -3.5276 11 1 4.2235 4.2076 -4.0142 12 1 6.3925 4.7184 -3.0583 13 1 6.1619 2.8884 -4.6331 14 6 4.0246 -0.7784 -1.3588 15 8 3.7854 -1.4742 -0.3900 16 6 4.3673 -1.4030 -2.6474 17 7 4.7322 -0.6985 -3.6741 18 16 5.0393 -1.5971 -4.9117 19 6 4.6940 -3.1535 -4.1602 20 6 4.7286 -4.4683 -4.6004 21 6 4.3923 -5.4784 -3.7411 22 6 4.0175 -5.1916 -2.4348 23 6 3.6503 -6.3186 -1.5042 24 6 3.9757 -3.9063 -1.9816 25 6 4.3211 -2.8491 -2.8384 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8514 0.5682 0.8410 32 1 3.9786 2.1765 0.0889 33 1 6.2532 3.4493 -0.7935 34 1 5.0193 -4.6934 -5.6159 35 1 4.4176 -6.5034 -4.0803 36 1 4.5426 -6.6641 -0.9821 37 1 2.9181 -5.9659 -0.7777 38 1 3.2245 -7.1407 -2.0793 39 1 3.6816 -3.7020 -0.9627 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457209773.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:24 Heat of formation + Delta-G solvation = -27.525302 kcal Electronic energy + Delta-G solvation = -25001.050833 eV Core-core repulsion = 21421.286819 eV Total energy + Delta-G solvation = -3579.764014 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44325 -40.10006 -38.59869 -37.72591 -36.69243 -33.58994 -33.43093 -31.72390 -30.98785 -27.88594 -27.38204 -27.17000 -26.14546 -24.22399 -23.13889 -21.95228 -21.01656 -19.40662 -19.14428 -17.84581 -17.36010 -17.08831 -16.83621 -16.44941 -16.22915 -16.01780 -15.91878 -15.62463 -15.15150 -14.89381 -14.71132 -14.43440 -14.16000 -13.54048 -13.35869 -13.28424 -13.03418 -12.90319 -12.84086 -12.73001 -12.61647 -12.52500 -12.37022 -12.15016 -11.96124 -11.62506 -11.42106 -10.99356 -10.59581 -10.57388 -10.31581 -9.81867 -9.38609 -8.70763 -8.29806 -6.08752 -0.47364 0.17497 0.54151 0.80462 1.01362 1.41169 1.44781 1.51164 2.27058 2.39093 2.75247 2.79221 2.98952 3.17765 3.48953 3.84797 3.99333 4.24597 4.27402 4.34615 4.35313 4.47386 4.48331 4.54730 4.55418 4.66488 4.76993 4.80004 4.90635 4.98279 5.06511 5.14350 5.23901 5.27400 5.27875 5.49852 5.58533 5.67184 5.97167 6.05132 6.36440 6.51637 7.09816 7.49558 7.96305 8.71734 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011724 B = 0.005860 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.671405 B = 4777.353596 C = 6509.739457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.404 6.404 3 C 0.059 3.941 4 C 0.117 3.883 5 N -0.425 5.425 6 C -0.313 4.313 7 H 0.104 0.896 8 C 0.003 3.997 9 N -0.899 5.899 10 Si 0.981 3.019 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.273 1.273 14 C 0.522 3.478 15 O -0.598 6.598 16 C 0.083 3.917 17 N -0.467 5.467 18 S 0.327 5.673 19 C -0.208 4.208 20 C -0.070 4.070 21 C -0.083 4.083 22 C -0.088 4.088 23 C -0.109 4.109 24 C -0.071 4.071 25 C -0.111 4.111 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.274 0.726 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.097 0.903 39 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.921 -11.974 -6.373 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.019 4.019 4 C -0.006 4.006 5 N -0.143 5.143 6 C -0.444 4.444 7 H 0.121 0.879 8 C -0.200 4.200 9 N -0.538 5.538 10 Si 0.805 3.195 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.198 1.198 14 C 0.308 3.692 15 O -0.484 6.484 16 C -0.103 4.103 17 N -0.291 5.291 18 S 0.487 5.513 19 C -0.329 4.329 20 C -0.092 4.092 21 C -0.105 4.105 22 C -0.090 4.090 23 C -0.166 4.166 24 C -0.093 4.093 25 C -0.122 4.122 26 H 0.057 0.943 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.185 0.815 35 H 0.196 0.804 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.222 -10.701 -7.348 13.650 hybrid contribution -0.295 0.525 1.257 1.394 sum -4.516 -10.176 -6.091 12.690 Atomic orbital electron populations 1.22852 0.80657 1.03038 1.00388 1.88116 1.20572 1.28213 1.95373 1.22955 0.94059 0.84676 1.00172 1.21594 0.91761 1.00949 0.86295 1.43422 1.54640 1.03245 1.12951 1.20015 1.28030 1.07389 0.88997 0.87896 1.26280 0.94163 1.00055 0.99472 1.69819 1.30931 1.29306 1.23731 0.85176 0.78760 0.77400 0.78211 1.18648 1.20154 1.19820 1.17874 0.81928 0.83386 0.86027 1.90568 1.56461 1.62884 1.38453 1.22157 1.03646 0.90383 0.94091 1.72619 1.17918 1.33157 1.05400 1.81024 1.64416 0.88343 1.17552 1.24484 1.08170 1.02529 0.97703 1.20410 0.99462 0.87571 1.01769 1.21374 0.96593 1.00875 0.91697 1.20006 0.98678 0.93769 0.96506 1.20868 1.02270 0.95381 0.98058 1.20675 0.98311 0.91197 0.99125 1.19858 1.05214 0.91532 0.95586 0.94282 0.89382 0.92551 0.90906 0.93908 0.93802 0.86648 0.91643 0.81475 0.80449 0.90011 0.92051 0.88429 0.86322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 11.01 113.37 1.25 2.10 16 2 O -0.40 -17.80 9.27 -138.38 -1.28 -19.09 16 3 C 0.06 2.50 6.28 71.99 0.45 2.95 16 4 C 0.12 5.94 5.41 86.38 0.47 6.41 16 5 N -0.42 -23.35 2.49 -639.44 -1.59 -24.94 16 6 C -0.31 -17.04 7.71 84.10 0.65 -16.39 16 7 H 0.10 5.66 5.88 -2.91 -0.02 5.64 16 8 C 0.00 0.14 5.21 84.96 0.44 0.59 16 9 N -0.90 -48.95 11.16 21.68 0.24 -48.71 16 10 Si 0.98 41.89 29.56 68.60 2.03 43.92 16 11 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 12 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 13 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 14 C 0.52 28.95 7.12 86.61 0.62 29.57 16 15 O -0.60 -34.34 13.76 6.38 0.09 -34.25 16 16 C 0.08 4.15 6.70 43.82 0.29 4.45 16 17 N -0.47 -22.23 7.38 -64.46 -0.48 -22.70 16 18 S 0.33 11.85 23.36 -56.49 -1.32 10.53 16 19 C -0.21 -7.14 6.73 22.97 0.15 -6.98 16 20 C -0.07 -1.70 10.03 22.04 0.22 -1.48 16 21 C -0.08 -1.73 9.63 22.09 0.21 -1.52 16 22 C -0.09 -2.33 5.84 -20.15 -0.12 -2.45 16 23 C -0.11 -2.05 9.98 71.23 0.71 -1.34 16 24 C -0.07 -2.65 9.18 22.36 0.21 -2.45 16 25 C -0.11 -4.70 6.10 -20.17 -0.12 -4.82 16 26 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 2.34 7.47 -2.39 -0.02 2.33 16 32 H 0.12 6.01 5.55 -2.39 -0.01 6.00 16 33 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 34 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.18 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.26 8.07 -2.38 -0.02 1.24 16 38 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 39 H 0.12 5.01 6.66 -2.91 -0.02 4.99 16 Total: -1.00 -72.31 340.17 4.20 -68.11 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.08 Total: 18.50 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 5.43 Total: 8.64 kcal Atomic # 7 Polarization: -94.53 SS G_CDS: -1.82 Total: -96.35 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -1.19 Total: -53.33 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 11.85 SS G_CDS: -1.32 Total: 10.53 kcal Total: -72.31 4.20 -68.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457209773.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.582 kcal (2) G-P(sol) polarization free energy of solvation -72.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds