Wall clock time and date at job start Tue Mar 31 2020 13:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36612 * 120.92470 * 2 1 4 4 C 1.39289 * 119.93511 * 180.02562 * 3 2 1 5 5 N 1.31115 * 121.74912 * 359.97438 * 4 3 2 6 6 C 1.33650 * 121.32041 * 0.02562 * 5 4 3 7 7 C 1.40727 * 120.92411 * 180.02562 * 2 1 3 8 8 C 1.40436 * 121.37902 * 359.97438 * 7 2 1 9 9 C 1.36132 * 119.61088 * 179.97438 * 8 7 2 10 10 C 1.39362 * 120.87378 * 359.72420 * 9 8 7 11 11 C 1.36059 * 121.07353 * 0.56198 * 10 9 8 12 12 S 1.76204 * 120.12918 * 179.71726 * 11 10 9 13 13 O 1.42098 * 106.39820 * 1.18920 * 12 11 10 14 14 O 1.42093 * 106.40397 * 228.26626 * 12 11 10 15 15 N 1.65601 * 107.21660 * 114.72418 * 12 11 10 16 16 C 1.46500 * 120.00132 * 65.00075 * 15 12 11 17 17 H 1.08998 * 109.46845 * 25.00607 * 16 15 12 18 18 C 1.52997 * 109.47473 * 265.00058 * 16 15 12 19 19 C 1.50706 * 109.47187 * 144.99661 * 16 15 12 20 20 H 1.07998 * 119.99629 * 0.02562 * 19 16 15 21 21 C 1.37875 * 119.99955 * 179.97438 * 19 16 15 22 22 N 1.31510 * 120.00308 * 0.02562 * 21 19 16 23 23 Si 1.86800 * 119.99908 * 180.02562 * 21 19 16 24 24 H 1.48500 * 109.47233 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.46997 * 120.00173 * 23 21 19 26 26 H 1.48501 * 109.47364 * 240.00497 * 23 21 19 27 27 H 1.08998 * 109.47095 * 89.99183 * 1 2 3 28 28 H 1.08989 * 109.47228 * 209.99722 * 1 2 3 29 29 H 1.09003 * 109.46532 * 329.99757 * 1 2 3 30 30 H 1.08006 * 120.03627 * 0.04617 * 3 2 1 31 31 H 1.08000 * 119.12781 * 180.02562 * 4 3 2 32 32 H 1.08001 * 120.19406 * 359.95378 * 8 7 2 33 33 H 1.08008 * 119.56086 * 180.02562 * 9 8 7 34 34 H 1.07998 * 119.46410 * 180.30289 * 10 9 8 35 35 H 0.97003 * 119.99877 * 245.00296 * 15 12 11 36 36 H 1.09002 * 109.47153 * 59.99757 * 18 16 15 37 37 H 1.09001 * 109.46832 * 299.99948 * 18 16 15 38 38 H 1.09004 * 109.47261 * 179.97438 * 18 16 15 39 39 H 0.96998 * 120.00365 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2091 1.1719 0.0000 4 6 3.6018 1.1479 -0.0005 5 7 4.2723 0.0212 -0.0006 6 6 3.6465 -1.1598 -0.0006 7 6 2.2302 -1.2072 -0.0005 8 6 1.5775 -2.4507 -0.0006 9 6 2.3128 -3.5963 -0.0016 10 6 3.7057 -3.5521 -0.0084 11 6 4.3706 -2.3651 -0.0028 12 16 6.1325 -2.3383 -0.0041 13 8 6.5543 -3.6947 -0.0399 14 8 6.5207 -1.4302 1.0175 15 7 6.6113 -1.6618 -1.4378 16 6 6.2944 -0.2615 -1.7291 17 1 6.1629 0.2833 -0.7942 18 6 5.0033 -0.1901 -2.5469 19 6 7.4221 0.3557 -2.5156 20 1 8.2880 -0.2361 -2.7731 21 6 7.3478 1.6756 -2.9072 22 7 6.2932 2.3961 -2.5941 23 14 8.7453 2.4404 -3.8827 24 1 9.8071 1.4262 -4.1046 25 1 8.2326 2.9145 -5.1933 26 1 9.3069 3.5882 -3.1262 27 1 -0.3633 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5137 29 1 -0.3632 0.8900 0.5139 30 1 1.6848 2.1162 0.0008 31 1 4.1437 2.0821 -0.0001 32 1 0.4985 -2.4977 0.0006 33 1 1.8099 -4.5522 -0.0021 34 1 4.2664 -4.4751 -0.0141 35 1 7.1016 -2.1928 -2.0848 36 1 4.1877 -0.6365 -1.9780 37 1 5.1349 -0.7348 -3.4818 38 1 4.7673 0.8519 -2.7632 39 1 6.2411 3.3248 -2.8693 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547641192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:39 Heat of formation + Delta-G solvation = -4.849475 kcal Electronic energy + Delta-G solvation = -25848.976486 eV Core-core repulsion = 22270.195769 eV Total energy + Delta-G solvation = -3578.780717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.85365 -37.14724 -36.38994 -35.42324 -35.06457 -34.46280 -32.04367 -30.51036 -30.45068 -28.19548 -27.70697 -25.13126 -23.92712 -23.53588 -21.48840 -20.78532 -18.75003 -17.88760 -17.64733 -17.28130 -16.34718 -15.93242 -15.54629 -15.08273 -14.74002 -14.60813 -14.37779 -13.87754 -13.51825 -13.43768 -13.28690 -12.76219 -12.70282 -12.40115 -12.02795 -12.00239 -11.72142 -11.45335 -11.36465 -11.24234 -11.21996 -11.03877 -10.87831 -10.64117 -10.48392 -10.19885 -10.05590 -9.98360 -9.31798 -8.75982 -8.55369 -8.47758 -8.27409 -8.07417 -6.01858 -4.05311 0.25002 1.00658 1.23419 1.93235 2.96564 3.30402 3.38354 3.42909 3.88980 4.19927 4.38977 4.44309 4.52168 4.56070 4.75888 4.79044 4.90311 5.09508 5.12433 5.31370 5.38965 5.42000 5.50329 5.55177 5.65428 5.80569 5.99216 6.06926 6.12464 6.18999 6.39177 6.59253 6.63589 6.92124 6.96672 7.05565 7.23631 7.73706 7.83913 8.14162 8.17602 8.24604 8.45501 8.97679 9.57881 11.04248 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.013784 B = 0.006185 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.853530 B = 4525.736922 C = 5981.587891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.028 4.028 3 C -0.180 4.180 4 C 0.174 3.826 5 N -0.452 5.452 6 C 0.211 3.789 7 C -0.127 4.127 8 C -0.045 4.045 9 C -0.155 4.155 10 C 0.008 3.992 11 C -0.651 4.651 12 S 2.697 3.303 13 O -0.992 6.992 14 O -0.945 6.945 15 N -1.095 6.095 16 C 0.264 3.736 17 H 0.090 0.910 18 C -0.154 4.154 19 C -0.515 4.515 20 H 0.061 0.939 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.897 3.103 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.284 1.284 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.137 0.863 31 H 0.170 0.830 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.146 0.854 35 H 0.405 0.595 36 H 0.011 0.989 37 H 0.020 0.980 38 H 0.090 0.910 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.925 -5.891 4.364 15.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.036 4.036 3 C -0.200 4.200 4 C 0.002 3.998 5 N -0.160 5.160 6 C 0.089 3.911 7 C -0.130 4.130 8 C -0.064 4.064 9 C -0.174 4.174 10 C -0.013 4.013 11 C -0.735 4.735 12 S 2.784 3.216 13 O -0.982 6.982 14 O -0.935 6.935 15 N -0.856 5.856 16 C 0.160 3.840 17 H 0.107 0.893 18 C -0.213 4.213 19 C -0.555 4.555 20 H 0.079 0.921 21 C -0.138 4.138 22 N -0.527 5.527 23 Si 0.725 3.275 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.210 1.210 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.154 0.846 31 H 0.187 0.813 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.163 0.837 35 H 0.238 0.762 36 H 0.030 0.970 37 H 0.040 0.960 38 H 0.108 0.892 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.664 -5.984 5.163 14.928 hybrid contribution -0.833 0.390 -1.393 1.669 sum -13.497 -5.594 3.771 15.089 Atomic orbital electron populations 1.20842 0.90313 1.03219 1.02947 1.20078 0.96252 0.92207 0.95071 1.21830 0.95902 0.98535 1.03715 1.23144 0.90948 0.96973 0.88718 1.68477 1.38596 0.97333 1.11638 1.18024 0.89278 0.91348 0.92457 1.18694 0.94250 0.94111 1.05966 1.21228 0.99847 0.91582 0.93710 1.20962 0.93968 0.98740 1.03692 1.20837 0.94930 0.96961 0.88532 1.31007 1.28899 0.96881 1.16725 1.01737 0.73174 0.72356 0.74369 1.93494 1.80890 1.36274 1.87572 1.93571 1.79817 1.64256 1.55870 1.55479 1.69682 1.23313 1.37163 1.18955 0.92476 0.74366 0.98234 0.89294 1.22446 0.97530 1.03238 0.98108 1.21381 1.03604 0.96091 1.34438 0.92128 1.24833 0.95974 0.96887 0.96080 1.69867 1.28022 1.08193 1.46622 0.86470 0.82299 0.79230 0.79515 1.19862 1.21234 1.20977 0.90345 0.91150 0.90714 0.84557 0.81255 0.85018 0.85021 0.83660 0.76226 0.97046 0.96047 0.89151 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 9.60 36.01 0.35 -0.66 16 2 C -0.03 -0.37 5.92 -104.27 -0.62 -0.99 16 3 C -0.18 -2.48 9.72 -39.78 -0.39 -2.86 16 4 C 0.17 3.03 10.76 -17.47 -0.19 2.85 16 5 N -0.45 -9.21 4.21 -10.97 -0.05 -9.26 16 6 C 0.21 3.98 4.34 -84.85 -0.37 3.61 16 7 C -0.13 -1.96 5.74 -106.80 -0.61 -2.57 16 8 C -0.04 -0.55 9.31 -39.51 -0.37 -0.92 16 9 C -0.15 -1.89 9.95 -39.92 -0.40 -2.28 16 10 C 0.01 0.12 9.47 -39.95 -0.38 -0.25 16 11 C -0.65 -12.03 5.71 -39.47 -0.23 -12.26 16 12 S 2.70 56.07 5.45 -107.50 -0.59 55.49 16 13 O -0.99 -20.55 16.93 -57.17 -0.97 -21.51 16 14 O -0.95 -22.68 16.66 -57.17 -0.95 -23.63 16 15 N -1.10 -23.95 5.46 -5.88 -0.03 -23.98 16 16 C 0.26 6.55 2.13 -69.08 -0.15 6.40 16 17 H 0.09 2.39 5.42 -51.93 -0.28 2.10 16 18 C -0.15 -3.64 8.01 37.16 0.30 -3.34 16 19 C -0.51 -13.91 8.76 -34.44 -0.30 -14.21 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 22 N -0.89 -23.71 11.32 55.43 0.63 -23.09 16 23 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.51 6.52 -51.94 -0.34 0.17 16 29 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.17 2.86 8.06 -52.49 -0.42 2.44 16 32 H 0.13 1.13 6.45 -52.49 -0.34 0.79 16 33 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 34 H 0.15 1.93 7.26 -52.49 -0.38 1.54 16 35 H 0.40 8.05 8.83 -34.47 -0.30 7.75 16 36 H 0.01 0.24 4.24 -51.93 -0.22 0.02 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 39 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -33.35 325.07 -9.78 -43.13 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -4.26 Total: 7.90 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.44 Total: -25.87 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.55 Total: -56.33 kcal Atomic # 8 Polarization: -43.22 SS G_CDS: -1.92 Total: -45.14 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 56.07 SS G_CDS: -0.59 Total: 55.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.35 -9.78 -43.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547641192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.282 kcal (2) G-P(sol) polarization free energy of solvation -33.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds