Wall clock time and date at job start Tue Mar 31 2020 12:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 115.55176 * 2 1 4 4 C 1.53075 * 117.49456 * 214.26986 * 2 1 3 5 5 C 1.52997 * 59.98423 * 252.51648 * 4 2 1 6 6 C 1.47201 * 117.50449 * 107.50133 * 5 4 2 7 7 N 3.58156 * 77.26300 * 145.65316 * 2 1 3 8 8 N 1.46503 * 117.49646 * 252.49691 * 5 4 2 9 9 S 1.65604 * 120.00082 * 248.74422 * 8 5 4 10 10 O 1.42096 * 106.40368 * 311.46081 * 9 8 5 11 11 O 1.42105 * 106.40084 * 178.54127 * 9 8 5 12 12 C 1.76191 * 107.21471 * 65.00165 * 9 8 5 13 13 C 1.38655 * 119.87930 * 270.01875 * 12 9 8 14 14 C 1.38610 * 120.50445 * 179.97438 * 13 12 9 15 15 C 1.37640 * 120.25117 * 0.02562 * 14 13 12 16 16 C 1.40697 * 119.74042 * 359.97438 * 15 14 13 17 17 C 1.41398 * 120.24404 * 180.02562 * 16 15 14 18 18 H 1.07993 * 120.00289 * 155.23865 * 17 16 15 19 19 C 1.39944 * 119.99714 * 335.23134 * 17 16 15 20 20 N 1.30826 * 120.00374 * 342.26904 * 19 17 16 21 21 Si 1.86805 * 119.99612 * 162.26100 * 19 17 16 22 22 H 1.48500 * 109.47178 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46811 * 120.00602 * 21 19 17 24 24 H 1.48508 * 109.47037 * 240.00400 * 21 19 17 25 25 C 1.37606 * 119.87618 * 90.00037 * 12 9 8 26 26 H 1.09005 * 109.47509 * 274.33318 * 1 2 3 27 27 H 1.09005 * 109.47210 * 34.33174 * 1 2 3 28 28 H 1.08998 * 109.47750 * 154.33173 * 1 2 3 29 29 H 1.09002 * 109.47068 * 205.66831 * 3 2 1 30 30 H 1.08999 * 109.46798 * 325.66516 * 3 2 1 31 31 H 1.09003 * 109.47174 * 85.67057 * 3 2 1 32 32 H 1.08999 * 117.51686 * 145.04029 * 4 2 1 33 33 H 1.09003 * 117.49183 * 359.97438 * 4 2 1 34 34 H 0.97000 * 119.99737 * 68.74984 * 8 5 4 35 35 H 1.08006 * 119.74597 * 0.02562 * 13 12 9 36 36 H 1.08005 * 119.87865 * 180.02562 * 14 13 12 37 37 H 1.07994 * 120.13123 * 180.02562 * 15 14 13 38 38 H 0.96998 * 119.99595 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.12336 * 359.74404 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2366 -1.1221 -0.7646 5 6 2.2363 -1.1207 0.7654 6 6 1.3920 -2.1161 1.4459 7 7 0.7403 -2.8843 1.9710 8 7 3.4932 -0.7902 1.4417 9 16 4.3106 -1.9566 2.2864 10 8 3.3526 -2.5942 3.1200 11 8 5.4879 -1.3384 2.7875 12 6 4.8417 -3.1678 1.1222 13 6 4.0226 -4.2465 0.8254 14 6 4.4272 -5.2066 -0.0888 15 6 5.6495 -5.0988 -0.7124 16 6 6.4890 -4.0085 -0.4190 17 6 7.7466 -3.8870 -1.0538 18 1 8.2072 -2.9158 -1.1582 19 6 8.3945 -5.0254 -1.5466 20 7 8.0351 -6.2133 -1.1328 21 14 9.7725 -4.8486 -2.7954 22 1 9.9858 -3.4102 -3.0968 23 1 11.0216 -5.4280 -2.2393 24 1 9.4057 -5.5671 -4.0422 25 6 6.0676 -3.0396 0.5106 26 1 -0.3634 0.0776 1.0248 27 1 -0.3634 0.8487 -0.5796 28 1 -0.3634 -0.9262 -0.4451 29 1 3.1823 1.3087 -0.4452 30 1 1.5809 2.0742 -0.5796 31 1 2.2766 1.7417 1.0248 32 1 3.1719 -0.8771 -1.2679 33 1 1.6112 -1.8601 -1.2669 34 1 3.8464 0.1120 1.3948 35 1 3.0616 -4.3388 1.3097 36 1 3.7809 -6.0425 -0.3128 37 1 5.9626 -5.8478 -1.4247 38 1 8.4840 -7.0023 -1.4747 39 1 6.7022 -2.1963 0.7399 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589596565.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:24 Heat of formation + Delta-G solvation = -2.212619 kcal Electronic energy + Delta-G solvation = -24817.700043 eV Core-core repulsion = 21239.033669 eV Total energy + Delta-G solvation = -3578.666374 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.70844 -37.67692 -36.80657 -35.70491 -35.39634 -33.87198 -33.17196 -30.10950 -29.84624 -29.24649 -27.75429 -25.51610 -23.83747 -21.95935 -21.03144 -20.30886 -19.30214 -18.31229 -17.45646 -17.12902 -15.96376 -15.60248 -15.21308 -14.90203 -14.67174 -14.29138 -14.17420 -13.77925 -13.48824 -13.40082 -12.96401 -12.93168 -12.64907 -12.60619 -12.47410 -12.01013 -11.96353 -11.81520 -11.67534 -11.54701 -11.49523 -11.43058 -11.39546 -11.31785 -11.06524 -10.90963 -10.60786 -10.08037 -9.79421 -9.68622 -9.38124 -9.17331 -8.07973 -7.73342 -6.94655 -4.56190 0.82274 2.13303 2.50784 2.60096 2.70962 2.98886 3.02006 3.04884 3.30967 3.63325 3.67362 3.81067 4.13080 4.33481 4.39480 4.55472 4.70158 4.72255 4.97504 5.34753 5.36412 5.44860 5.59079 5.63085 5.64084 5.70769 5.85412 5.88543 6.01823 6.03244 6.14991 6.61840 6.72012 6.75970 6.93880 7.02781 7.18068 7.34396 7.64304 7.69832 7.77133 7.90776 8.37090 8.64317 8.68585 10.01132 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.017215 B = 0.004120 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.056826 B = 6795.140425 C = 7026.433699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.091 4.091 3 C -0.124 4.124 4 C -0.141 4.141 5 C 0.197 3.803 6 C 0.220 3.780 7 N -0.374 5.374 8 N -1.079 6.079 9 S 2.677 3.323 10 O -0.963 6.963 11 O -0.963 6.963 12 C -0.627 4.627 13 C -0.143 4.143 14 C -0.119 4.119 15 C -0.114 4.114 16 C 0.092 3.908 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.793 5.793 21 Si 0.911 3.089 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.271 1.271 25 C -0.124 4.124 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.124 0.876 33 H 0.113 0.887 34 H 0.423 0.577 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.125 0.875 38 H 0.283 0.717 39 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.346 11.986 -3.707 15.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.095 4.095 3 C -0.181 4.181 4 C -0.182 4.182 5 C 0.102 3.898 6 C -0.100 4.100 7 N -0.049 5.049 8 N -0.835 5.835 9 S 2.774 3.226 10 O -0.953 6.953 11 O -0.954 6.954 12 C -0.720 4.720 13 C -0.164 4.164 14 C -0.139 4.139 15 C -0.134 4.134 16 C 0.089 3.911 17 C -0.490 4.490 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.418 5.418 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.199 1.199 24 H -0.196 1.196 25 C -0.145 4.145 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.142 0.858 33 H 0.131 0.869 34 H 0.260 0.740 35 H 0.120 0.880 36 H 0.116 0.884 37 H 0.143 0.857 38 H 0.094 0.906 39 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.169 10.425 -1.920 14.689 hybrid contribution 1.348 0.067 -1.255 1.843 sum -8.821 10.492 -3.175 14.070 Atomic orbital electron populations 1.21480 0.90893 1.02960 1.02709 1.22087 0.95569 0.91529 1.00311 1.21447 1.00925 0.92942 1.02832 1.24025 1.03726 0.99842 0.90600 1.16495 0.85637 0.97316 0.90324 1.27157 0.94917 0.93679 0.94219 1.81145 1.09461 1.08626 1.05709 1.55173 1.30848 1.26254 1.71242 1.02119 0.72838 0.73444 0.74212 1.93569 1.61883 1.75504 1.64299 1.93561 1.47199 1.76493 1.78126 1.29565 1.05696 1.15215 1.21523 1.20063 0.98601 0.95773 1.01965 1.20795 0.97034 0.97862 0.98207 1.21642 0.92074 0.99778 0.99896 1.17667 0.92867 0.90965 0.89620 1.19629 1.02252 0.94721 1.32355 0.89855 1.25942 0.98275 0.94614 0.95512 1.69790 1.37909 0.99287 1.34819 0.86206 0.80079 0.79953 0.80235 1.18213 1.19855 1.19610 1.20728 0.94208 1.01915 0.97669 0.91712 0.90850 0.91767 0.91139 0.90860 0.91385 0.85828 0.86888 0.74016 0.88036 0.88444 0.85745 0.90568 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 8.86 37.15 0.33 -0.63 16 2 C -0.09 -0.80 2.70 -154.47 -0.42 -1.22 16 3 C -0.12 -0.81 8.63 37.16 0.32 -0.49 16 4 C -0.14 -1.45 9.43 -26.69 -0.25 -1.70 16 5 C 0.20 2.51 2.93 -134.61 -0.39 2.11 16 6 C 0.22 3.51 11.21 -20.76 -0.23 3.28 16 7 N -0.37 -6.80 18.35 42.15 0.77 -6.02 16 8 N -1.08 -14.61 5.96 -1.75 -0.01 -14.62 16 9 S 2.68 50.26 5.58 -107.50 -0.60 49.66 16 10 O -0.96 -20.38 14.76 -57.17 -0.84 -21.22 16 11 O -0.96 -19.93 17.27 -57.17 -0.99 -20.92 16 12 C -0.63 -13.49 5.94 -39.66 -0.24 -13.73 16 13 C -0.14 -3.12 9.53 -39.29 -0.37 -3.50 16 14 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 15 C -0.11 -2.78 8.70 -38.87 -0.34 -3.11 16 16 C 0.09 2.31 5.57 -106.82 -0.60 1.72 16 17 C -0.46 -11.46 9.05 -37.74 -0.34 -11.80 16 18 H 0.08 1.97 7.91 -52.49 -0.41 1.56 16 19 C 0.07 1.77 5.14 -17.34 -0.09 1.69 16 20 N -0.79 -19.52 10.97 55.55 0.61 -18.91 16 21 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 22 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.12 -2.87 9.26 -38.87 -0.36 -3.23 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 0.42 7.92 -51.93 -0.41 0.01 16 28 H 0.06 0.52 7.90 -51.93 -0.41 0.10 16 29 H 0.07 0.43 7.81 -51.93 -0.41 0.03 16 30 H 0.07 0.37 7.92 -51.93 -0.41 -0.04 16 31 H 0.07 0.42 8.05 -51.93 -0.42 0.00 16 32 H 0.12 1.18 8.05 -51.93 -0.42 0.76 16 33 H 0.11 1.08 8.05 -51.93 -0.42 0.66 16 34 H 0.42 4.34 7.53 -34.48 -0.26 4.08 16 35 H 0.10 2.16 7.08 -52.48 -0.37 1.79 16 36 H 0.10 1.94 8.06 -52.48 -0.42 1.52 16 37 H 0.12 3.09 6.18 -52.49 -0.32 2.76 16 38 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 39 H 0.11 2.47 7.61 -52.49 -0.40 2.07 16 LS Contribution 347.28 15.07 5.23 5.23 Total: -1.00 -31.76 347.28 -8.88 -40.64 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -4.64 Total: 7.26 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: -3.38 Total: -33.69 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 1.37 Total: -39.56 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -1.83 Total: -42.14 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 50.26 SS G_CDS: -0.60 Total: 49.66 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.76 -8.88 -40.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589596565.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.427 kcal (2) G-P(sol) polarization free energy of solvation -31.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds