Wall clock time and date at job start Tue Mar 31 2020 13:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.61747 * 2 1 4 4 C 1.50339 * 109.52709 * 240.01788 * 2 1 3 5 5 O 1.21293 * 119.56107 * 31.11342 * 4 2 1 6 6 N 1.34644 * 120.83942 * 211.33176 * 4 2 1 7 7 C 1.39914 * 120.73181 * 2.15935 * 6 4 2 8 8 C 1.38583 * 120.77464 * 193.89998 * 7 6 4 9 9 C 1.38256 * 119.85431 * 180.48953 * 8 7 6 10 10 C 1.38305 * 120.36550 * 359.97438 * 9 8 7 11 11 C 1.38341 * 120.18610 * 359.90935 * 10 9 8 12 12 C 1.38327 * 119.73013 * 359.97438 * 11 10 9 13 13 N 1.40374 * 121.09475 * 180.22424 * 12 11 10 14 14 C 1.34776 * 121.06226 * 330.69736 * 13 12 11 15 15 O 1.21296 * 120.00001 * 183.70962 * 14 13 12 16 16 C 1.50707 * 120.00179 * 3.70910 * 14 13 12 17 17 S 1.80994 * 109.47204 * 197.55841 * 16 14 13 18 18 C 1.76202 * 100.00003 * 179.97438 * 17 16 14 19 19 H 1.08000 * 120.00006 * 0.02562 * 18 17 16 20 20 C 1.38799 * 119.99838 * 179.97438 * 18 17 16 21 21 N 1.31623 * 120.00245 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99578 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47255 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46543 * 120.00400 * 22 20 18 25 25 H 1.48497 * 109.47195 * 240.00066 * 22 20 18 26 26 H 1.08997 * 109.47199 * 309.64378 * 1 2 3 27 27 H 1.08993 * 109.47246 * 69.65357 * 1 2 3 28 28 H 1.09009 * 109.46743 * 189.65221 * 1 2 3 29 29 H 1.09002 * 109.46774 * 180.23239 * 3 2 1 30 30 H 1.08994 * 109.47386 * 300.22912 * 3 2 1 31 31 H 1.08996 * 109.47364 * 60.23574 * 3 2 1 32 32 H 0.96998 * 119.63603 * 182.18507 * 6 4 2 33 33 H 1.08003 * 120.06926 * 0.46778 * 8 7 6 34 34 H 1.08002 * 119.82184 * 180.02562 * 9 8 7 35 35 H 1.08000 * 119.90457 * 179.88461 * 10 9 8 36 36 H 1.07994 * 120.13612 * 180.02562 * 11 10 9 37 37 H 1.09002 * 109.46593 * 317.55909 * 16 14 13 38 38 H 1.08995 * 109.46629 * 77.55661 * 16 14 13 39 39 H 0.97005 * 119.99947 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0437 1.4412 0.0000 4 6 2.0325 -0.7081 -1.2273 5 8 1.3812 -0.6686 -2.2498 6 7 3.1939 -1.3889 -1.2045 7 6 3.9395 -1.4915 -0.0250 8 6 5.2524 -1.9341 -0.0523 9 6 5.9684 -2.0378 1.1258 10 6 5.3818 -1.7018 2.3324 11 6 4.0724 -1.2567 2.3691 12 6 3.3514 -1.1484 1.1936 13 7 2.0227 -0.6957 1.1972 14 6 1.2215 -0.8992 2.2616 15 8 0.0578 -0.5600 2.2185 16 6 1.7715 -1.5484 3.5056 17 16 0.4040 -2.1504 4.5270 18 6 1.3081 -2.8416 5.8722 19 1 2.3874 -2.8018 5.8746 20 6 0.6332 -3.4362 6.9293 21 7 -0.6822 -3.4842 6.9267 22 14 1.5918 -4.1696 8.3551 23 1 3.0466 -3.9881 8.1189 24 1 1.2060 -3.4847 9.6151 25 1 1.2845 -5.6182 8.4650 26 1 -0.3633 0.6556 0.7913 27 1 -0.3633 0.3573 -0.9635 28 1 -0.3633 -1.0132 0.1723 29 1 3.1337 1.4383 -0.0042 30 1 1.6783 1.9572 -0.8879 31 1 1.6851 1.9547 0.8920 32 1 3.5175 -1.8127 -2.0148 33 1 5.7152 -2.1977 -0.9919 34 1 6.9918 -2.3824 1.1039 35 1 5.9474 -1.7874 3.2484 36 1 3.6153 -0.9941 3.3117 37 1 2.4119 -2.3850 3.2259 38 1 2.3525 -0.8188 4.0695 39 1 -1.1538 -3.9001 7.6653 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590610642.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:53 Heat of formation + Delta-G solvation = -28.565598 kcal Electronic energy + Delta-G solvation = -25056.847642 eV Core-core repulsion = 21477.038517 eV Total energy + Delta-G solvation = -3579.809125 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.09437 -40.63931 -39.96772 -37.14426 -36.31879 -34.64004 -34.57934 -31.34102 -30.56798 -29.76734 -28.53141 -27.67393 -25.91445 -23.88986 -23.58803 -22.20122 -20.15187 -19.69793 -19.34927 -18.86221 -18.14280 -17.42049 -16.87562 -16.84540 -16.40545 -16.12478 -15.92816 -15.57638 -15.51815 -14.94032 -14.74317 -14.48552 -14.22472 -14.13765 -13.86119 -13.62336 -13.41819 -13.29199 -13.12718 -12.91472 -12.77094 -12.69575 -12.60382 -12.17857 -11.90196 -11.71396 -11.58790 -11.16306 -11.10784 -10.56350 -10.25972 -9.52541 -8.84640 -8.68907 -8.34391 -6.13184 0.01815 0.25411 0.97867 1.22123 1.35672 1.42243 1.43352 1.56329 1.71286 1.81864 2.26122 2.75128 2.88759 3.01004 3.14112 3.43334 3.57398 3.62737 3.67954 3.98219 4.05203 4.29367 4.33798 4.39350 4.42440 4.47726 4.53407 4.58138 4.66820 4.79102 4.90099 4.95577 5.07224 5.19293 5.43743 5.45243 5.49254 5.57261 5.72608 5.86788 6.09366 6.21142 6.68497 6.80977 7.07571 8.75075 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.015952 B = 0.004350 C = 0.003616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.802417 B = 6435.166048 C = 7741.642729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.149 3.851 3 C -0.145 4.145 4 C 0.521 3.479 5 O -0.539 6.539 6 N -0.644 5.644 7 C 0.112 3.888 8 C -0.116 4.116 9 C -0.095 4.095 10 C -0.108 4.108 11 C -0.145 4.145 12 C 0.093 3.907 13 N -0.549 5.549 14 C 0.538 3.462 15 O -0.520 6.520 16 C -0.125 4.125 17 S -0.152 6.152 18 C -0.540 4.540 19 H 0.088 0.912 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.997 3.003 23 H -0.252 1.252 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.425 0.575 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.153 0.847 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.123 0.877 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.484 5.600 -14.033 23.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.062 3.938 3 C -0.203 4.203 4 C 0.307 3.693 5 O -0.415 6.415 6 N -0.290 5.290 7 C 0.015 3.985 8 C -0.137 4.137 9 C -0.114 4.114 10 C -0.127 4.127 11 C -0.166 4.166 12 C -0.002 4.002 13 N -0.277 5.277 14 C 0.327 3.673 15 O -0.395 6.395 16 C -0.275 4.275 17 S 0.076 5.924 18 C -0.687 4.687 19 H 0.106 0.894 20 C -0.190 4.190 21 N -0.549 5.549 22 Si 0.819 3.181 23 H -0.175 1.175 24 H -0.201 1.201 25 H -0.202 1.202 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.266 0.734 33 H 0.184 0.816 34 H 0.184 0.816 35 H 0.171 0.829 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.140 0.860 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 15.989 5.932 -14.596 22.447 hybrid contribution 1.101 -0.769 0.771 1.548 sum 17.089 5.163 -13.825 22.579 Atomic orbital electron populations 1.22049 0.89845 1.03049 1.03044 1.21013 0.97501 0.94425 0.80869 1.22130 1.02307 0.91002 1.04884 1.20715 0.80464 0.78395 0.89727 1.90757 1.55910 1.61250 1.33606 1.43398 1.21445 1.51620 1.12514 1.17766 0.93437 1.03662 0.83621 1.21017 0.89864 1.01331 1.01445 1.21419 1.01423 0.97985 0.90589 1.21404 0.93192 0.97919 1.00164 1.21684 0.95635 1.02195 0.97082 1.17801 0.83727 1.04108 0.94585 1.45883 1.10542 1.55978 1.15325 1.20266 0.85473 0.77704 0.83808 1.90752 1.17293 1.49871 1.81613 1.24044 1.03475 1.03698 0.96236 1.85590 1.10564 1.74345 1.21900 1.23191 0.95436 1.43645 1.06462 0.89424 1.26107 0.96032 0.95706 1.01133 1.70186 1.08630 1.43065 1.33016 0.84921 0.78882 0.77581 0.76696 1.17507 1.20125 1.20198 0.89422 0.90577 0.94182 0.90623 0.88810 0.90310 0.73405 0.81641 0.81573 0.82939 0.83938 0.87266 0.85990 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.94 6.76 71.98 0.49 -3.45 16 2 C 0.15 4.20 1.00 2.65 0.00 4.20 16 3 C -0.15 -3.17 8.64 71.98 0.62 -2.54 16 4 C 0.52 14.16 6.82 87.56 0.60 14.76 16 5 O -0.54 -17.16 16.77 -3.07 -0.05 -17.22 16 6 N -0.64 -13.30 5.37 -303.71 -1.63 -14.93 16 7 C 0.11 2.23 6.59 38.26 0.25 2.48 16 8 C -0.12 -1.47 9.93 22.36 0.22 -1.25 16 9 C -0.10 -1.09 10.03 22.29 0.22 -0.86 16 10 C -0.11 -1.69 10.04 22.31 0.22 -1.47 16 11 C -0.15 -3.26 7.70 22.32 0.17 -3.09 16 12 C 0.09 2.31 5.76 38.12 0.22 2.53 16 13 N -0.55 -16.66 2.66 -590.17 -1.57 -18.23 16 14 C 0.54 20.42 7.39 87.66 0.65 21.07 16 15 O -0.52 -22.97 11.88 -3.08 -0.04 -23.00 16 16 C -0.12 -4.88 4.00 71.24 0.28 -4.59 16 17 S -0.15 -8.17 20.66 -56.49 -1.17 -9.34 16 18 C -0.54 -29.66 9.50 67.95 0.65 -29.01 16 19 H 0.09 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.83 5.49 84.86 0.47 1.29 16 21 N -0.91 -55.00 13.22 21.65 0.29 -54.72 16 22 Si 1.00 42.20 29.55 68.60 2.03 44.23 16 23 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 24 H -0.28 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 26 H 0.09 2.98 6.43 -2.39 -0.02 2.96 16 27 H 0.08 2.23 7.48 -2.39 -0.02 2.21 16 28 H 0.04 1.50 7.25 -2.38 -0.02 1.48 16 29 H 0.07 1.46 8.06 -2.39 -0.02 1.44 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.43 6.45 8.82 -92.71 -0.82 5.63 16 33 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 36 H 0.14 3.53 4.11 -2.91 -0.01 3.52 16 37 H 0.11 4.00 6.27 -2.39 -0.02 3.98 16 38 H 0.12 4.28 6.42 -2.40 -0.02 4.26 16 39 H 0.27 15.15 8.31 -92.70 -0.77 14.38 16 Total: -1.00 -75.63 332.49 3.21 -72.42 By element: Atomic # 1 Polarization: 20.44 SS G_CDS: 0.29 Total: 20.73 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: 5.07 Total: 0.06 kcal Atomic # 7 Polarization: -84.96 SS G_CDS: -2.91 Total: -87.88 kcal Atomic # 8 Polarization: -40.13 SS G_CDS: -0.09 Total: -40.22 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: -8.17 SS G_CDS: -1.17 Total: -9.34 kcal Total: -75.63 3.21 -72.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590610642.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.850 kcal (2) G-P(sol) polarization free energy of solvation -75.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds