Wall clock time and date at job start Tue Mar 31 2020 12:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00454 * 2 1 4 4 H 1.48502 * 109.47176 * 240.00308 * 3 2 1 5 5 H 1.48500 * 109.46868 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47332 * 120.00081 * 3 2 1 7 7 C 1.37878 * 119.99925 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00734 * 180.02562 * 7 2 1 9 9 C 1.50707 * 120.00094 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64592 * 298.30792 * 9 7 2 11 11 C 1.54599 * 110.71876 * 61.45633 * 9 7 2 12 12 C 1.53991 * 105.13812 * 140.49491 * 11 9 7 13 13 N 1.47902 * 107.05720 * 1.22483 * 12 11 9 14 14 C 1.46906 * 110.99850 * 214.15392 * 13 12 11 15 15 C 1.50703 * 109.47073 * 69.87467 * 14 13 12 16 16 C 1.40784 * 126.66748 * 95.23675 * 15 14 13 17 17 C 1.37265 * 103.86198 * 180.11962 * 16 15 14 18 18 C 1.47013 * 126.96724 * 179.97438 * 17 16 15 19 19 C 1.36204 * 125.33383 * 179.70590 * 18 17 16 20 20 C 1.37717 * 114.44054 * 179.97438 * 19 18 17 21 21 C 1.33723 * 115.19342 * 0.27767 * 20 19 18 22 22 S 1.75825 * 109.96308 * 359.59388 * 21 20 19 23 23 O 1.34619 * 106.06425 * 359.66888 * 17 16 15 24 24 N 1.20887 * 111.40117 * 0.22539 * 23 17 16 25 25 C 1.48525 * 105.82072 * 334.66844 * 13 12 11 26 26 H 0.97001 * 119.99402 * 359.97438 * 1 2 3 27 27 H 0.96702 * 113.99533 * 61.69012 * 10 9 7 28 28 H 1.09000 * 110.31296 * 21.58055 * 11 9 7 29 29 H 1.09006 * 110.39346 * 259.45187 * 11 9 7 30 30 H 1.09001 * 109.91968 * 241.86817 * 12 11 9 31 31 H 1.09000 * 109.91738 * 120.57691 * 12 11 9 32 32 H 1.09004 * 109.47135 * 309.87752 * 14 13 12 33 33 H 1.08994 * 109.46924 * 189.87299 * 14 13 12 34 34 H 1.08000 * 128.07096 * 0.03393 * 16 15 14 35 35 H 1.08003 * 122.77694 * 359.96660 * 19 18 17 36 36 H 1.08002 * 122.39836 * 180.02562 * 20 19 18 37 37 H 1.07997 * 125.02011 * 179.72637 * 21 20 19 38 38 H 1.09005 * 110.66961 * 157.64110 * 25 13 12 39 39 H 1.08999 * 110.66703 * 280.77054 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6188 1.1771 11 6 0.3786 -2.6271 -1.2705 12 6 0.5026 -4.1017 -1.6967 13 7 1.3707 -4.7691 -0.7025 14 6 2.1899 -5.8119 -1.3347 15 6 3.2266 -5.1688 -2.2195 16 6 4.5570 -4.8658 -1.8724 17 6 5.0723 -4.2970 -3.0104 18 6 6.4385 -3.7899 -3.2047 19 6 6.9171 -3.2356 -4.3530 20 6 8.2330 -2.8348 -4.2869 21 6 8.8371 -3.0554 -3.1145 22 16 7.7109 -3.8036 -1.9904 23 8 4.0751 -4.3039 -3.9147 24 7 3.0673 -4.7891 -3.4564 25 6 2.2238 -3.6985 -0.1262 26 1 -0.4849 0.8401 0.0004 27 1 -0.2278 -1.9347 1.2627 28 1 0.7563 -1.9732 -2.0564 29 1 -0.6598 -2.3848 -1.0440 30 1 0.9545 -4.1654 -2.6865 31 1 -0.4816 -4.5701 -1.7041 32 1 1.5522 -6.4609 -1.9349 33 1 2.6856 -6.4017 -0.5638 34 1 5.0554 -5.0390 -0.9301 35 1 6.3146 -3.1200 -5.2419 36 1 8.7418 -2.3790 -5.1234 37 1 9.8642 -2.8084 -2.8903 38 1 2.6007 -3.9923 0.8534 39 1 3.0463 -3.4577 -0.7997 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592148535.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:40 Heat of formation + Delta-G solvation = 39.896093 kcal Electronic energy + Delta-G solvation = -24826.014419 eV Core-core repulsion = 21249.174016 eV Total energy + Delta-G solvation = -3576.840403 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.97750 -40.28879 -38.69097 -37.13295 -34.92665 -34.19470 -33.75607 -31.63231 -30.00322 -29.53513 -27.78957 -26.10170 -25.34585 -24.27615 -22.61828 -21.71895 -21.29615 -19.83286 -19.18419 -19.12061 -18.67533 -17.56728 -17.06773 -16.89899 -16.49959 -16.17702 -15.86713 -15.37319 -14.99274 -14.73461 -14.46219 -14.23697 -14.17617 -13.77738 -13.57795 -13.42957 -13.29820 -13.21364 -12.92848 -12.71771 -12.53284 -12.39825 -12.26581 -12.05540 -11.84041 -11.73021 -11.26927 -11.23409 -11.10385 -10.63290 -10.14530 -9.53165 -9.51937 -9.26975 -8.24806 -6.40473 -0.67195 0.31889 0.70336 0.93423 1.15149 1.36788 1.37369 1.45332 1.85075 2.13064 2.34376 2.94744 3.00706 3.22506 3.31037 3.85245 3.91636 4.00121 4.04640 4.16370 4.21983 4.28393 4.40584 4.52266 4.56824 4.61289 4.66597 4.71804 4.81179 4.92317 5.02585 5.05623 5.16460 5.25922 5.41069 5.43327 5.50168 5.66691 5.82113 6.03236 6.17997 6.64251 7.13418 7.30928 7.44344 8.80825 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.011587 B = 0.004814 C = 0.003811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2415.925919 B = 5815.129243 C = 7346.097933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.031 3.969 3 Si 0.954 3.046 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.561 4.561 8 H 0.050 0.950 9 C 0.241 3.759 10 O -0.586 6.586 11 C -0.117 4.117 12 C 0.035 3.965 13 N -0.500 5.500 14 C 0.118 3.882 15 C -0.004 4.004 16 C -0.216 4.216 17 C 0.039 3.961 18 C -0.175 4.175 19 C -0.101 4.101 20 C -0.145 4.145 21 C -0.193 4.193 22 S 0.170 5.830 23 O 0.096 5.904 24 N -0.378 5.378 25 C 0.059 3.941 26 H 0.269 0.731 27 H 0.372 0.628 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.190 0.810 35 H 0.152 0.848 36 H 0.175 0.825 37 H 0.204 0.796 38 H 0.074 0.926 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.911 -8.523 -7.114 20.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.170 4.170 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.600 4.600 8 H 0.069 0.931 9 C 0.201 3.799 10 O -0.394 6.394 11 C -0.156 4.156 12 C -0.092 4.092 13 N -0.223 5.223 14 C -0.011 4.011 15 C -0.163 4.163 16 C -0.238 4.238 17 C -0.025 4.025 18 C -0.293 4.293 19 C -0.134 4.134 20 C -0.174 4.174 21 C -0.329 4.329 22 S 0.435 5.565 23 O 0.030 5.970 24 N -0.084 5.084 25 C -0.068 4.068 26 H 0.078 0.922 27 H 0.220 0.780 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.142 0.858 34 H 0.207 0.793 35 H 0.169 0.831 36 H 0.192 0.808 37 H 0.221 0.779 38 H 0.093 0.907 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 15.885 -9.745 -5.944 19.561 hybrid contribution 0.433 2.423 -1.666 2.972 sum 16.318 -7.322 -7.610 19.437 Atomic orbital electron populations 1.69811 1.06810 1.28197 1.50094 1.25672 0.95818 1.02189 0.93295 0.85674 0.78633 0.79005 0.78751 1.20080 1.20276 1.19463 1.21775 0.93268 0.92260 1.52664 0.93135 1.19553 0.87205 0.91375 0.81778 1.86125 1.51561 1.55890 1.45814 1.22686 1.00302 0.93436 0.99224 1.22934 0.97833 0.94598 0.93878 1.65087 1.17634 1.11607 1.27943 1.21208 0.90866 0.94261 0.94773 1.24517 0.97188 1.02359 0.92264 1.22842 0.94360 1.06003 1.00621 1.21702 0.89978 1.01293 0.89566 1.22003 0.93414 1.12840 1.01048 1.21049 0.96918 0.97736 0.97722 1.20290 0.93603 1.03549 0.99914 1.26401 1.04890 1.05208 0.96422 1.84241 0.99773 1.58761 1.13726 1.84888 1.14701 1.60011 1.37416 1.73804 1.05885 1.14828 1.13874 1.23124 0.94502 0.90401 0.98769 0.92162 0.78001 0.94992 0.93205 0.93648 0.90315 0.88101 0.85828 0.79297 0.83068 0.80796 0.77947 0.90722 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.35 11.00 21.45 0.24 -50.11 16 2 C 0.03 1.70 5.28 84.66 0.45 2.14 16 3 Si 0.95 43.28 29.54 68.60 2.03 45.31 16 4 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.56 -31.31 8.15 25.60 0.21 -31.10 16 8 H 0.05 2.81 7.78 -2.91 -0.02 2.79 16 9 C 0.24 12.52 0.95 -10.33 -0.01 12.51 16 10 O -0.59 -31.95 13.09 -148.98 -1.95 -33.90 16 11 C -0.12 -5.88 5.26 31.47 0.17 -5.71 16 12 C 0.04 1.48 6.46 86.45 0.56 2.04 16 13 N -0.50 -19.59 5.54 -887.58 -4.91 -24.50 16 14 C 0.12 3.62 6.07 85.56 0.52 4.14 16 15 C 0.00 -0.14 4.72 43.40 0.20 0.06 16 16 C -0.22 -6.39 9.47 22.66 0.21 -6.18 16 17 C 0.04 1.18 7.29 24.34 0.18 1.36 16 18 C -0.18 -4.33 6.45 24.10 0.16 -4.17 16 19 C -0.10 -2.09 10.17 21.67 0.22 -1.87 16 20 C -0.14 -2.17 10.15 21.12 0.21 -1.96 16 21 C -0.19 -2.65 11.21 66.79 0.75 -1.90 16 22 S 0.17 3.22 23.12 -56.49 -1.31 1.91 16 23 O 0.10 3.26 11.23 66.05 0.74 4.00 16 24 N -0.38 -13.60 10.77 -48.67 -0.52 -14.12 16 25 C 0.06 2.63 5.40 86.65 0.47 3.10 16 26 H 0.27 14.18 8.31 -92.71 -0.77 13.41 16 27 H 0.37 20.60 7.46 -74.06 -0.55 20.04 16 28 H 0.03 1.71 7.84 -2.39 -0.02 1.69 16 29 H 0.05 2.60 7.98 -2.38 -0.02 2.58 16 30 H 0.05 1.88 6.07 -2.39 -0.01 1.87 16 31 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.10 2.81 8.08 -2.38 -0.02 2.79 16 33 H 0.12 3.09 8.14 -2.39 -0.02 3.07 16 34 H 0.19 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 36 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.20 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.07 3.25 8.14 -2.38 -0.02 3.23 16 39 H 0.05 2.27 5.09 -2.39 -0.01 2.26 16 Total: -1.00 -65.23 337.89 -0.86 -66.09 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: 0.54 Total: 32.86 kcal Atomic # 6 Polarization: -31.83 SS G_CDS: 4.29 Total: -27.54 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -5.20 Total: -88.74 kcal Atomic # 8 Polarization: -28.69 SS G_CDS: -1.21 Total: -29.90 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: 3.22 SS G_CDS: -1.31 Total: 1.91 kcal Total: -65.23 -0.86 -66.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592148535.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.982 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds