Wall clock time and date at job start Tue Mar 31 2020 12:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.50704 * 109.47242 * 249.96137 * 3 2 1 5 5 C 1.38260 * 119.99857 * 269.98241 * 4 3 2 6 6 C 1.38214 * 119.99686 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00187 * 359.80910 * 6 5 4 8 8 C 1.38215 * 119.99868 * 0.44122 * 7 6 5 9 9 S 1.76194 * 119.99884 * 179.78832 * 8 7 6 10 10 O 1.42098 * 106.40033 * 156.19077 * 9 8 7 11 11 O 1.42104 * 106.40414 * 23.26615 * 9 8 7 12 12 N 1.65606 * 107.21807 * 269.72790 * 9 8 7 13 13 C 1.46501 * 119.99827 * 62.14607 * 12 9 8 14 14 C 1.52993 * 109.46924 * 160.10376 * 13 12 9 15 15 C 1.50706 * 115.55179 * 294.51547 * 14 13 12 16 16 H 1.07999 * 119.99580 * 114.53923 * 15 14 13 17 17 C 1.37870 * 119.99900 * 294.27194 * 15 14 13 18 18 N 1.31519 * 119.99859 * 176.85447 * 17 15 14 19 19 Si 1.86797 * 120.00042 * 356.84650 * 17 15 14 20 20 H 1.48500 * 109.47095 * 92.38836 * 19 17 15 21 21 H 1.48507 * 109.47486 * 212.38651 * 19 17 15 22 22 H 1.48503 * 109.47481 * 332.38754 * 19 17 15 23 23 C 1.53004 * 117.50173 * 80.18717 * 14 13 12 24 24 C 1.53007 * 117.50053 * 148.84701 * 14 13 12 25 25 C 1.38212 * 120.00068 * 89.99623 * 4 3 2 26 26 H 1.09003 * 109.46976 * 129.96399 * 3 2 1 27 27 H 1.08993 * 109.47513 * 9.95860 * 3 2 1 28 28 H 1.07998 * 119.99991 * 359.97438 * 5 4 3 29 29 H 1.08003 * 119.99552 * 179.97438 * 6 5 4 30 30 H 1.08005 * 119.99756 * 180.23361 * 7 6 5 31 31 H 0.96996 * 119.99938 * 242.14386 * 12 9 8 32 32 H 1.09000 * 109.47283 * 40.09950 * 13 12 9 33 33 H 1.09000 * 109.46752 * 280.09973 * 13 12 9 34 34 H 0.97004 * 119.99532 * 179.97438 * 18 17 15 35 35 H 1.09000 * 117.50224 * 215.00459 * 23 14 13 36 36 H 1.08996 * 117.49564 * 0.02562 * 23 14 13 37 37 H 1.08998 * 117.49371 * 359.97438 * 24 14 13 38 38 H 1.08993 * 117.49739 * 144.97421 * 24 14 13 39 39 H 1.08001 * 120.00067 * 359.97438 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1102 0.4877 1.3348 5 6 3.3404 1.8360 1.5367 6 6 3.8004 2.2827 2.7611 7 6 4.0266 1.3819 3.7852 8 6 3.8015 0.0335 3.5817 9 16 4.0951 -1.1152 4.8851 10 8 3.2878 -2.2513 4.6080 11 8 4.0097 -0.3778 6.0968 12 7 5.6681 -1.6158 4.7522 13 6 6.7589 -0.6472 4.8877 14 6 8.0574 -1.3848 5.2204 15 6 8.0857 -2.0806 6.5569 16 1 8.1492 -3.1577 6.6036 17 6 8.0361 -1.3417 7.7198 18 7 7.9983 -1.9509 8.8848 19 14 8.0227 0.5245 7.6409 20 1 6.6191 1.0093 7.6263 21 1 8.7243 1.0754 8.8282 22 1 8.7140 0.9728 6.4054 23 6 8.8109 -2.0453 4.0641 24 6 9.3660 -0.7751 4.7135 25 6 3.3409 -0.4134 2.3571 26 1 2.9711 0.6609 -0.7877 27 1 2.9719 -1.0113 -0.1777 28 1 3.1607 2.5401 0.7377 29 1 3.9806 3.3359 2.9186 30 1 4.3825 1.7315 4.7431 31 1 5.8672 -2.5502 4.5847 32 1 6.5243 0.0546 5.6881 33 1 6.8799 -0.1029 3.9511 34 1 7.9638 -1.4310 9.7030 35 1 9.3270 -2.9830 4.2700 36 1 8.3817 -1.9539 3.0663 37 1 9.3017 0.1513 4.1427 38 1 10.2471 -0.8769 5.3469 39 1 3.1609 -1.4665 2.1995 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619529219.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:55 Heat of formation + Delta-G solvation = 5.718631 kcal Electronic energy + Delta-G solvation = -24417.881389 eV Core-core repulsion = 20839.558940 eV Total energy + Delta-G solvation = -3578.322449 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 320.098 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.79607 -37.50249 -36.95273 -36.86244 -35.53911 -33.53017 -33.37296 -32.12995 -31.52272 -28.29532 -26.48800 -24.87367 -23.55892 -22.47286 -21.65125 -19.46462 -19.10580 -18.28705 -17.40906 -17.21548 -16.65492 -16.17193 -16.13233 -15.31551 -15.01991 -14.89466 -14.42883 -14.14303 -14.04102 -13.56327 -13.47259 -13.34115 -12.86255 -12.73101 -12.63865 -12.47759 -12.43140 -12.03006 -11.79078 -11.71791 -11.65157 -11.47867 -11.01396 -10.81845 -10.64053 -10.63081 -10.29357 -9.65542 -9.62693 -9.25899 -9.22665 -8.86545 -8.68775 -8.50100 -6.11795 -4.14686 0.44933 0.74088 0.90895 2.41053 2.44438 3.02380 3.31289 3.38572 3.41393 3.43947 3.77133 4.02014 4.17528 4.37878 4.42361 4.63011 4.69599 4.76920 4.82561 4.94344 5.02347 5.18781 5.22924 5.41192 5.55440 5.58521 5.80920 5.83729 5.89439 5.92145 5.99957 6.00967 6.07291 6.40597 6.49463 6.55905 6.66979 7.00489 7.08768 7.21237 7.52023 7.69906 8.46202 8.89710 9.50803 10.99910 Molecular weight = 320.10amu Principal moments of inertia in cm(-1) A = 0.018862 B = 0.004042 C = 0.003970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.071263 B = 6926.383319 C = 7051.428042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.206 3.794 3 C 0.019 3.981 4 C -0.121 4.121 5 C -0.055 4.055 6 C -0.139 4.139 7 C -0.013 4.013 8 C -0.671 4.671 9 S 2.687 3.313 10 O -0.965 6.965 11 O -0.950 6.950 12 N -1.088 6.088 13 C 0.150 3.850 14 C -0.007 4.007 15 C -0.488 4.488 16 H 0.078 0.922 17 C 0.083 3.917 18 N -0.892 5.892 19 Si 0.853 3.147 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.249 1.249 23 C -0.180 4.180 24 C -0.187 4.187 25 C -0.005 4.005 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.133 0.867 29 H 0.135 0.865 30 H 0.143 0.857 31 H 0.422 0.578 32 H 0.067 0.933 33 H 0.045 0.955 34 H 0.266 0.734 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.976 7.783 -18.088 20.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.112 4.112 3 C -0.021 4.021 4 C -0.123 4.123 5 C -0.073 4.073 6 C -0.157 4.157 7 C -0.032 4.032 8 C -0.756 4.756 9 S 2.775 3.225 10 O -0.955 6.955 11 O -0.939 6.939 12 N -0.850 5.850 13 C 0.024 3.976 14 C -0.010 4.010 15 C -0.525 4.525 16 H 0.096 0.904 17 C -0.120 4.120 18 N -0.529 5.529 19 Si 0.679 3.321 20 H -0.190 1.190 21 H -0.217 1.217 22 H -0.173 1.173 23 C -0.218 4.218 24 C -0.226 4.226 25 C -0.024 4.024 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.151 0.849 29 H 0.153 0.847 30 H 0.161 0.839 31 H 0.259 0.741 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.076 0.924 35 H 0.104 0.896 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.356 7.747 -17.236 20.278 hybrid contribution 0.760 1.122 -0.470 1.434 sum -6.596 8.869 -17.706 20.873 Atomic orbital electron populations 1.81253 1.12905 1.08423 1.08002 1.29030 0.95027 0.93575 0.93572 1.18155 0.81852 1.05789 0.96285 1.19500 1.03728 0.94148 0.94925 1.21342 0.93901 0.94692 0.97343 1.21303 1.00897 1.00331 0.93206 1.21128 0.91396 0.91245 0.99421 1.31317 1.15362 1.11937 1.16939 1.02122 0.72850 0.73483 0.74082 1.93561 1.67013 1.49167 1.85799 1.93620 1.85777 1.73606 1.40937 1.54989 1.21842 1.18810 1.89334 1.21078 0.88035 0.90148 0.98369 1.19492 0.87273 0.98913 0.95293 1.20209 1.51544 0.94520 0.86192 0.90392 1.24910 0.93547 0.98410 0.95178 1.69875 1.49226 1.36067 0.97703 0.87224 0.79353 0.86843 0.78646 1.19027 1.21692 1.17271 1.22803 1.05914 0.96915 0.96126 1.23063 1.00268 0.95094 1.04196 1.20847 0.90986 1.00342 0.90231 0.86043 0.85865 0.84947 0.84684 0.83895 0.74147 0.91476 0.93709 0.92423 0.89578 0.90818 0.91180 0.89291 0.83807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.33 18.54 42.15 0.78 -4.55 16 2 C 0.21 1.83 15.42 -20.76 -0.32 1.51 16 3 C 0.02 0.09 5.83 -30.67 -0.18 -0.09 16 4 C -0.12 -0.98 5.09 -104.62 -0.53 -1.51 16 5 C -0.05 -0.41 9.70 -39.58 -0.38 -0.80 16 6 C -0.14 -1.27 10.05 -39.58 -0.40 -1.66 16 7 C -0.01 -0.15 9.52 -39.58 -0.38 -0.53 16 8 C -0.67 -8.82 5.89 -39.58 -0.23 -9.05 16 9 S 2.69 45.43 5.73 -107.50 -0.62 44.82 16 10 O -0.97 -17.53 17.28 -57.17 -0.99 -18.52 16 11 O -0.95 -19.74 16.79 -57.17 -0.96 -20.70 16 12 N -1.09 -18.63 5.88 -10.62 -0.06 -18.69 16 13 C 0.15 2.77 5.66 -4.04 -0.02 2.75 16 14 C -0.01 -0.15 0.85 -155.66 -0.13 -0.28 16 15 C -0.49 -12.74 9.31 -34.44 -0.32 -13.06 16 16 H 0.08 2.23 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 18 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 19 Si 0.85 20.46 24.88 -169.99 -4.23 16.23 16 20 H -0.26 -6.42 7.02 56.52 0.40 -6.02 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.25 -5.35 5.81 56.52 0.33 -5.02 16 23 C -0.18 -3.17 9.96 -26.69 -0.27 -3.44 16 24 C -0.19 -3.52 8.15 -26.69 -0.22 -3.74 16 25 C 0.00 -0.05 9.18 -39.58 -0.36 -0.42 16 26 H 0.12 0.20 8.09 -51.93 -0.42 -0.22 16 27 H 0.12 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 29 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 30 H 0.14 1.75 7.61 -52.48 -0.40 1.35 16 31 H 0.42 6.78 8.69 -34.47 -0.30 6.48 16 32 H 0.07 1.37 4.50 -51.93 -0.23 1.14 16 33 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 34 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 39 H 0.14 1.36 7.62 -52.49 -0.40 0.96 16 LS Contribution 350.80 15.07 5.29 5.29 Total: -1.00 -35.87 350.80 -8.62 -44.50 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.76 Total: 5.68 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: -3.84 Total: -28.10 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 1.49 Total: -49.18 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -1.95 Total: -39.23 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.23 Total: 16.23 kcal Atomic # 16 Polarization: 45.43 SS G_CDS: -0.62 Total: 44.82 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.87 -8.62 -44.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619529219.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.215 kcal (2) G-P(sol) polarization free energy of solvation -35.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds